RchiOBHm_Chr7g0222871

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
44494203 .. 44494814
612 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19952

Sequence Viewer

Length: 612 bp
ATGTTTGCATCAGCAAATGGCTACTCCAGAAAGGATGAAGAATCTGCCACCTTGCAATCCGAAGATGAGCTCAAACGCCAAAAGAGAATCAAATTGGCTATGTATATTGGTGGTTTCATTATGTTTCAGATCATAGTGATGACCGTATTTGGTCTCACTGTGATGAAAGTTAAGACCCCAAAAGTCAGGTTAGGTGCCATCAACGTCCAAAGCCTCAACTCTGTCCCTGCCACACCTTCATTTGACACAACCTTCACAACCCAAATCAGGGTCAAGAACACAAACTGGGGACCTTATAAGTTCGATGCAAGCACTGCAATGTTCATGTACCAAGGCTTGGCTGTGGGGCAAGTTAGTATTCCTAAGAGCAAGGCTGGCATGCGTTCCACCAAAAAGATTGATGTCACAGTGAGTTTGAATTCCAATGTATTGCCAAGCTCAAATCTCGGAAGTGATTTGAATGGTGGGATCTTGACCCTCAGCAGCCAAGCTAAATTGACCGGAAAGGTTGAACTCATGTTCATCATGAAGAAAAAGAAGTCGACTAATATGGACTGTACCATAGCATTTGATCTGTCCTCCAAGGCGGTCCAAACTTTACAATGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

203

Amino Acids

22.26

Weight (kDa)

9.91

Isoelectric Point (pI)

32.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 89 - 187 5.2e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 297
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 337
AccI GTMKAC 1 cut(s) 542
AciI CCGC 1 cut(s) 587
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 1 cut(s) 418
AfaI GTAC 2 cut(s) 329, 559
AfiI CCNNNNNNNGG 3 cut(s) 267, 268, 337
AgsI TTSAA 3 cut(s) 418, 460, 512
AluBI AGCT 3 cut(s) 70, 438, 491
AluI AGCT 3 cut(s) 70, 438, 491
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 1 cut(s) 476
ApeKI GCWGC 1 cut(s) 483
ApoI RAATTY 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 290, 589
AvaII GGWCC 2 cut(s) 290, 589
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BbvCI CCTCAGC 1 cut(s) 479
BbvI GCAGC 1 cut(s) 495
BccI CCATC 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 158
BisI GCNGC 1 cut(s) 484
BlsI GCNGC 1 cut(s) 485
Bme18I GGWCC 2 cut(s) 290, 589
BmgT120I GGNCC 2 cut(s) 290, 589
BmiI GGNNCC 2 cut(s) 196, 291
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 2 cut(s) 17, 295
BmuI ACTGGG 1 cut(s) 295
BpmI CTGGAG 1 cut(s) 10
Bpu10I CCTNAGC 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 331, 582
BsaWI WCCGGW 1 cut(s) 500
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 268, 337
Bse1I ACTGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 331, 582
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 3 cut(s) 267, 268, 337
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 493
BseNI ACTGG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 495
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 501
BslFI GGGAC 2 cut(s) 209, 303
BslI CCNNNNNNNGG 3 cut(s) 267, 268, 337
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 209, 303
Bso31I GGTCTC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 3 cut(s) 129, 468, 571
BspACI CCGC 1 cut(s) 587
BspCNI CTCAG 1 cut(s) 492
BspHI TCATGA 1 cut(s) 525
BspLI GGNNCC 2 cut(s) 196, 291
BspPI GGATC 1 cut(s) 476
BspT107I GGYRCC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 331, 582
BssMI GATC 3 cut(s) 129, 468, 571
BssT1I CCWWGG 2 cut(s) 331, 582
Bst4CI ACNGT 4 cut(s) 145, 160, 409, 557
BstAPI GCANNNNNTGC 1 cut(s) 314
BstC8I GCNNGC 3 cut(s) 310, 376, 380
BstDEI CTNAG 2 cut(s) 363, 479
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 3 cut(s) 132, 471, 574
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 3 cut(s) 129, 468, 571
BstMWI GCNNNNNNNGC 2 cut(s) 314, 375
BstNSI RCATGY 1 cut(s) 382
BstV1I GCAGC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
BtsCI GGATG 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 3 cut(s) 156, 312, 414
Cac8I GCNNGC 3 cut(s) 310, 376, 380
CciI TCATGA 1 cut(s) 525
Cfr13I GGNCC 2 cut(s) 290, 589
Csp6I GTAC 2 cut(s) 328, 558
CviAII CATG 4 cut(s) 325, 379, 517, 526
CviQI GTAC 2 cut(s) 328, 558
DdeI CTNAG 2 cut(s) 363, 479
DpnI GATC 3 cut(s) 131, 470, 573
DpnII GATC 3 cut(s) 129, 468, 571
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 331, 582
Eco24I GRGCYC 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 2 cut(s) 290, 589
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 331, 582
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 331, 582
FaeI CATG 4 cut(s) 328, 382, 520, 529
FaqI GGGAC 2 cut(s) 209, 303
FatI CATG 4 cut(s) 324, 378, 516, 525
FblI GTMKAC 1 cut(s) 542
Fnu4HI GCNGC 1 cut(s) 484
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 484
GluI GCNGC 1 cut(s) 484
GsuI CTGGAG 1 cut(s) 10
HapII CCGG 1 cut(s) 501
Hin1II CATG 4 cut(s) 328, 382, 520, 529
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HinfI GANTC 2 cut(s) 41, 87
HpaII CCGG 1 cut(s) 501
Hpy166II GTNNAC 1 cut(s) 543
Hpy188I TCNGA 3 cut(s) 61, 129, 449
Hpy188III TCNNGA 4 cut(s) 27, 274, 472, 526
Hpy8I GTNNAC 1 cut(s) 543
HpyAV CCTTC 2 cut(s) 246, 262
HpyCH4III ACNGT 4 cut(s) 145, 160, 409, 557
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 5 cut(s) 8, 55, 308, 317, 606
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 375
HpyF3I CTNAG 2 cut(s) 363, 479
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 4 cut(s) 328, 382, 520, 529
Kzo9I GATC 3 cut(s) 129, 468, 571
LpnPI CCDG 7 cut(s) 40, 172, 240, 253, 271, 360, 514
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 2 cut(s) 17, 295
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 403
MalI GATC 3 cut(s) 131, 470, 573
MboI GATC 3 cut(s) 129, 468, 571
MboII GAAGA 3 cut(s) 50, 74, 541
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 3 cut(s) 92, 418, 494
MnlI CCTC 3 cut(s) 224, 488, 589
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 3 cut(s) 137, 161, 317
MspI CCGG 1 cut(s) 501
MwoI GCNNNNNNNGC 2 cut(s) 314, 375
NdeII GATC 3 cut(s) 129, 468, 571
NlaIII CATG 4 cut(s) 328, 382, 520, 529
NlaIV GGNNCC 2 cut(s) 196, 291
NmuCI GTSAC 1 cut(s) 403
NspI RCATGY 1 cut(s) 382
PaeI GCATGC 1 cut(s) 382
PagI TCATGA 1 cut(s) 525
PfeI GAWTC 2 cut(s) 41, 87
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 1 cut(s) 485
PpuMI RGGWCCY 1 cut(s) 290
PsiI TTATAA 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 196, 291
PspPI GGNCC 2 cut(s) 290, 589
PspPPI RGGWCCY 1 cut(s) 290
PsuI RGATCY 1 cut(s) 468
RsaI GTAC 2 cut(s) 329, 559
RsaNI GTAC 2 cut(s) 328, 558
RseI CAYNNNNRTG 3 cut(s) 137, 161, 317
SacI GAGCTC 1 cut(s) 72
SalI GTCGAC 1 cut(s) 541
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 484
Sau3AI GATC 3 cut(s) 129, 468, 571
Sau96I GGNCC 2 cut(s) 290, 589
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 2 cut(s) 17, 295
SinI GGWCC 2 cut(s) 290, 589
SmiMI CAYNNNNRTG 3 cut(s) 137, 161, 317
SphI GCATGC 1 cut(s) 382
Sse9I AATT 3 cut(s) 92, 418, 494
SsiI CCGC 1 cut(s) 587
SstI GAGCTC 1 cut(s) 72
StyI CCWWGG 2 cut(s) 331, 582
TaaI ACNGT 4 cut(s) 145, 160, 409, 557
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 303, 542
TasI AATT 3 cut(s) 92, 418, 494
TfiI GAWTC 2 cut(s) 41, 87
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 3 cut(s) 163, 319, 414
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 1 cut(s) 483
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 7 cut(s) 51, 106, 179, 228, 313, 511, 542
TspRI CASTG 3 cut(s) 163, 319, 414
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 2 cut(s) 290, 589
XapI RAATTY 1 cut(s) 418
XceI RCATGY 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.