MD06G1210800.v1.1

Transcription initiation factor TFIID

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0003127
Physical Location & Seq
Forward (+)
34349335 .. 34351380
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1210800.v1.1.491

Sequence Viewer

Length: 681 bp
ATGGCGAAGCCACGAAAGCCCAAGAACGAAGACGCCAAGCCTGAAAACTCAGGGTCCGTCGTCCGCCACCAGAAGCTCTGCCTCTGCATCGACGTCGATAAACGTCGCATTTACGGGTACACTGAGTTGAAGATTGTGGTCCCAGAAATTGGGATTGTAGGGTTACACGCAGAGAATTTGGGGATTGAGAGTGTTTCAGTCGACGGTGAGCAGACCGAGTTCGAATACTACCCGCAGAGTAATCATAAAGATGCGGAGAGCGAGAGGAGATGGAGCTGGGTGACATCGCCGAACTCTGCTGCGGATGCGGCAGGGTCAACATATATATCGGCTCTTGAGAGAGAGCTGGTCCCGAATTTACTGATCAATTGCTGTAAGGCTTTCAAGGCCGGAAGCGAACCGCAGGAGCAATTGCTTGGGGATAATGAGGTGCAGCAGTCTTCTGGAGAAGCCAAGCAGAATGTGAGGTTGGTTCGTGTTGATTATTGGGTAGAAAAAGCGGAGACGGGAATTTATTTTCATGATGCCATTCTACATACCGATAACCAGATACGGCGTGCACGGTGCTGGTTCCCTTGTATAGATGACAATTCACAAAGTTGCTGCTATGATCTGGAGTTCACTGTTGCACAAAATCTTGTGGCTGTTAGCACTGGAAACTTACTATACCAGTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Peptidase_M1

Protein Analysis

227

Amino Acids

25.52

Weight (kDa)

5.05

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
AccB7I CCANNNNNTGG 1 cut(s) 149
AccI GTMKAC 1 cut(s) 201
AciI CCGC 7 cut(s) 64, 233, 254, 302, 308, 401, 500
AcsI RAATTY 3 cut(s) 175, 355, 510
AcyI GRCGYC 2 cut(s) 33, 93
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 130, 385
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AluBI AGCT 3 cut(s) 76, 276, 346
AluI AGCT 3 cut(s) 76, 276, 346
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 1 cut(s) 497
Alw44I GTGCAC 1 cut(s) 558
AoxI GGCC 1 cut(s) 387
ApaLI GTGCAC 1 cut(s) 558
ApeKI GCWGC 3 cut(s) 299, 433, 603
ApoI RAATTY 3 cut(s) 175, 355, 510
AspS9I GGNCC 3 cut(s) 54, 139, 349
AsuHPI GGTGA 2 cut(s) 218, 292
AsuII TTCGAA 1 cut(s) 222
AvaII GGWCC 3 cut(s) 54, 139, 349
BaeGI GKGCMC 1 cut(s) 562
BbsI GAAGAC 2 cut(s) 36, 432
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 3 cut(s) 286, 445, 590
BccI CCATC 1 cut(s) 264
BceAI ACGGC 1 cut(s) 569
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BclI TGATCA 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 497
BisI GCNGC 4 cut(s) 300, 309, 434, 604
BlsI GCNGC 4 cut(s) 301, 310, 435, 605
Bme18I GGWCC 3 cut(s) 54, 139, 349
BmgT120I GGNCC 3 cut(s) 54, 139, 349
BmiI GGNNCC 4 cut(s) 55, 141, 351, 572
BmsI GCATC 4 cut(s) 96, 241, 295, 514
BpiI GAAGAC 2 cut(s) 36, 432
BpmI CTGGAG 2 cut(s) 465, 635
Bpu14I TTCGAA 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 356
BsaHI GRCGYC 2 cut(s) 33, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 2 cut(s) 658, 670
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 2 cut(s) 63, 114
BseNI ACTGG 2 cut(s) 658, 670
BseRI GAGGAG 1 cut(s) 280
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 3 cut(s) 286, 445, 590
BseYI CCCAGC 1 cut(s) 276
BsgI GTGCAG 1 cut(s) 452
BshFI GGCC 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 562
BsiSI CCGG 1 cut(s) 390
BslFI GGGAC 2 cut(s) 125, 335
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 497
BsmBI CGTCTC 1 cut(s) 497
BsmFI GGGAC 2 cut(s) 125, 335
BsnI GGCC 1 cut(s) 389
Bsp119I TTCGAA 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 562
Bsp143I GATC 2 cut(s) 363, 610
BspACI CCGC 7 cut(s) 64, 233, 254, 302, 308, 401, 500
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 2 cut(s) 62, 115
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 4 cut(s) 55, 141, 351, 572
BspT104I TTCGAA 1 cut(s) 222
BsrI ACTGG 2 cut(s) 658, 670
BssMI GATC 2 cut(s) 363, 610
BssNI GRCGYC 2 cut(s) 33, 93
Bst4CI ACNGT 3 cut(s) 206, 564, 625
BstACI GRCGYC 2 cut(s) 33, 93
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 2 cut(s) 49, 123
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 2 cut(s) 366, 613
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 2 cut(s) 363, 610
BstMWI GCNNNNNNNGC 4 cut(s) 16, 305, 308, 386
BstSLI GKGCMC 1 cut(s) 562
BstV1I GCAGC 3 cut(s) 286, 445, 590
BstV2I GAAGAC 2 cut(s) 36, 432
BsuRI GGCC 1 cut(s) 389
BtgZI GCGATG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 3 cut(s) 120, 621, 651
Cac8I GCNNGC 1 cut(s) 558
CciI TCATGA 1 cut(s) 520
Cfr13I GGNCC 3 cut(s) 54, 139, 349
CseI GACGC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 521
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 2 cut(s) 49, 123
DpnI GATC 2 cut(s) 365, 612
DpnII GATC 2 cut(s) 363, 610
EciI GGCGGA 1 cut(s) 53
Eco47I GGWCC 3 cut(s) 54, 139, 349
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 1 cut(s) 524
FaqI GGGAC 2 cut(s) 125, 335
FatI CATG 1 cut(s) 520
FauI CCCGC 1 cut(s) 240
FbaI TGATCA 1 cut(s) 363
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 4 cut(s) 300, 309, 434, 604
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 4 cut(s) 300, 309, 434, 604
GluI GCNGC 4 cut(s) 300, 309, 434, 604
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 2 cut(s) 465, 635
HaeIII GGCC 1 cut(s) 389
HapII CCGG 1 cut(s) 390
HgaI GACGC 1 cut(s) 41
Hin1I GRCGYC 2 cut(s) 33, 93
Hin1II CATG 1 cut(s) 524
HincII GTYRAC 2 cut(s) 202, 318
HindII GTYRAC 2 cut(s) 202, 318
HpaII CCGG 1 cut(s) 390
HphI GGTGA 2 cut(s) 218, 292
Hpy166II GTNNAC 5 cut(s) 120, 202, 318, 560, 621
Hpy188III TCNNGA 5 cut(s) 335, 352, 444, 521, 614
Hpy8I GTNNAC 5 cut(s) 120, 202, 318, 560, 621
Hpy99I CGWCG 5 cut(s) 62, 95, 98, 108, 206
HpyCH4III ACNGT 3 cut(s) 206, 564, 625
HpyCH4IV ACGT 2 cut(s) 93, 103
HpyCH4V TGCA 4 cut(s) 87, 433, 560, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 305, 308, 386
HpyF3I CTNAG 2 cut(s) 49, 123
HpySE526I ACGT 2 cut(s) 93, 103
Hsp92I GRCGYC 2 cut(s) 33, 93
Hsp92II CATG 1 cut(s) 524
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 2 cut(s) 363, 610
LmnI GCTCC 2 cut(s) 273, 406
Lsp1109I GCAGC 3 cut(s) 286, 445, 590
LweI GCATC 4 cut(s) 96, 241, 295, 514
MaeII ACGT 2 cut(s) 93, 103
MaeIII GTNAC 2 cut(s) 162, 280
MalI GATC 2 cut(s) 365, 612
MboI GATC 2 cut(s) 363, 610
MboII GAAGA 3 cut(s) 41, 142, 432
MfeI CAATTG 2 cut(s) 367, 410
MhlI GDGCHC 1 cut(s) 562
MluCI AATT 7 cut(s) 147, 175, 355, 367, 410, 510, 589
MnlI CCTC 4 cut(s) 92, 258, 421, 459
MseI TTAA 1 cut(s) 679
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 1 cut(s) 390
MunI CAATTG 2 cut(s) 367, 410
MwoI GCNNNNNNNGC 4 cut(s) 16, 305, 308, 386
NdeII GATC 2 cut(s) 363, 610
NlaIII CATG 1 cut(s) 524
NlaIV GGNNCC 4 cut(s) 55, 141, 351, 572
NmuCI GTSAC 1 cut(s) 280
NspV TTCGAA 1 cut(s) 222
PagI TCATGA 1 cut(s) 520
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 4 cut(s) 301, 310, 435, 605
PspFI CCCAGC 1 cut(s) 276
PspN4I GGNNCC 4 cut(s) 55, 141, 351, 572
PspPI GGNCC 3 cut(s) 54, 139, 349
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 249
SalI GTCGAC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 679
SatI GCNGC 4 cut(s) 300, 309, 434, 604
Sau3AI GATC 2 cut(s) 363, 610
Sau96I GGNCC 3 cut(s) 54, 139, 349
SduI GDGCHC 1 cut(s) 562
SetI ASST 7 cut(s) 78, 96, 106, 278, 348, 432, 470
SfaNI GCATC 4 cut(s) 96, 241, 295, 514
SfuI TTCGAA 1 cut(s) 222
SinI GGWCC 3 cut(s) 54, 139, 349
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 7 cut(s) 147, 175, 355, 367, 410, 510, 589
SsiI CCGC 7 cut(s) 64, 233, 254, 302, 308, 401, 500
TaaI ACNGT 3 cut(s) 206, 564, 625
TaiI ACGT 2 cut(s) 96, 106
TaqI TCGA 4 cut(s) 90, 96, 201, 222
TaqII GACCGA 1 cut(s) 230
TasI AATT 7 cut(s) 147, 175, 355, 367, 410, 510, 589
TauI GCSGC 1 cut(s) 311
Tru1I TTAA 1 cut(s) 679
Tru9I TTAA 1 cut(s) 679
TscAI CASTG 3 cut(s) 127, 628, 658
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 3 cut(s) 299, 433, 603
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 509
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 3 cut(s) 127, 628, 658
Van91I CCANNNNNTGG 1 cut(s) 149
VneI GTGCAC 1 cut(s) 558
VpaK11BI GGWCC 3 cut(s) 54, 139, 349
XapI RAATTY 3 cut(s) 175, 355, 510
XmiI GTMKAC 1 cut(s) 201
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.