Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003127

Physical Location & Seq

Genomic Coordinates Reverse (-)

4417555 .. 4418276

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0060900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCCGAGAACAACCTCTCCGTCACTCTTCCGCAAACCCCGAATTCCGAGGCGGAAGAAGCACATATAGACTCCATAGCCGAGAGTCTCACCAGTGTGCTTGCAGCGGTAGATAATCTCCGCCCTAGCCGCCGGAGTTCTCTTCCCAACACTCCGGTCACTCCTGCCGCTCCTGTCATCACAAGTCCTCTTCAGGAACTTGTGGAAGAAGCAAAGAAGGCCGAGTTCTTCTCCTCCGAGCTCTGCAAACTTCTGCAGCTTAGTTTCATCACCGGAGACGTCAACTCCTCTCAGCACCTTGAGCCAATTCCCTCTGAATTCTACTCCACCAATGCAGGACTCAAATGCTCAATCTTTCGTGTCACAGAGATGCTTTACAGGCTGAAAGAGAATGCTGAAAGCTACACGGATGGGGAGGGGCACCCTCGCCTCTATCAGAAGGTGAGAGGATTCGACGATATCCTGATTGTGGATCGATTGGCCAAGGCCGGGTTTCTGAAACCCCGTGCCCAGTGCCATGAGCTGGACAAGGACAAGGACAAGGAGCTAGTTTTTGCAATTCACGAGTTCGCTGAAGCAAACGGCATTTCAATGGACAAATGTCATGAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Peptidase_M1

Protein Analysis

204

Amino Acids

22.66

Weight (kDa)

5.02

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73960 AT1G73960
fragaria_vesca	FvH4_5g12730
malus_domestica	MD06G1210800.v1.1 MD06G1211000.v1.1 MD14G1221500.v1.1 MD14G1221600.v1.1
prunus_persica	Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1
pyrus_communis	pycom06g18830 pycom14g18330
rosa_chinensis	RchiOBHm_Chr7g0184581
rosa_laevigata	RLG00000003716 RLG00000004966 RLG00000020303
rosa_multiflora	Rmu_ssc0000289.1_g000035
rosa_roxburghii	Rroxscaffold_3G00269500 Rroxscaffold_7G00196400
rosa_rugosa	Rorug06G0007300 Rorug07G0060900
rosa_samantha	Rh2BG075800 Rh2CG077900 Rh5DG337600 Rh5DG495400 Rh6AG042200 Rh6AG254600 Rh7AG079100 Rh7BG068200 Rh7BG189600 Rh7CG069000 Rh7DG068300 Rh7DG191200 Rh7DG191900
rosa_wichuraiana	Rw7G005620 Rw7G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	420
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	6 cut(s)	32, 53, 107, 121, 130, 168
AclWI	GGATC	1 cut(s)	480
AcoI	YGGCCR	2 cut(s)	3, 480
AcsI	RAATTY	2 cut(s)	43, 317
AcuI	CTGAAG	2 cut(s)	176, 594
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	3 cut(s)	469, 489, 523
AgsI	TTSAA	1 cut(s)	591
AleI	CACNNNNGTG	1 cut(s)	95
AloI	GAACNNNNNNTCC	1 cut(s)	34
AluBI	AGCT	5 cut(s)	241, 259, 402, 523, 547
AluI	AGCT	5 cut(s)	241, 259, 402, 523, 547
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	2 cut(s)	92, 270
AlwI	GGATC	1 cut(s)	480
AoxI	GGCC	4 cut(s)	3, 219, 480, 486
ApeKI	GCWGC	2 cut(s)	104, 256
ApoI	RAATTY	2 cut(s)	43, 317
AsuC2I	CCSGG	1 cut(s)	490
AsuHPI	GGTGA	3 cut(s)	82, 262, 454
BaeGI	GKGCMC	2 cut(s)	423, 511
BalI	TGGCCA	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	420
BanII	GRGCYC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	563
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	116, 268
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	598
BcnI	CCSGG	1 cut(s)	490
BcoDI	GTCTC	2 cut(s)	92, 270
BfaI	CTAG	2 cut(s)	126, 548
BfmI	CTRYAG	1 cut(s)	254
BisI	GCNGC	4 cut(s)	105, 130, 168, 257
BlsI	GCNGC	4 cut(s)	106, 131, 169, 258
Bme1390I	CCNGG	1 cut(s)	490
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	1 cut(s)	490
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	1 cut(s)	360
BmuI	ACTGGG	1 cut(s)	505
BoxI	GACNNNNGTC	1 cut(s)	600
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	490
Bsa29I	ATCGAT	1 cut(s)	475
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	48, 483
BsaWI	WCCGGW	2 cut(s)	154, 272
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	469, 489, 523
Bse1I	ACTGG	2 cut(s)	93, 511
BseCI	ATCGAT	1 cut(s)	475
BseDI	CCNNGG	2 cut(s)	48, 483
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	3 cut(s)	469, 489, 523
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	2 cut(s)	93, 511
BseRI	GAGGAG	2 cut(s)	223, 277
BseSI	GKGCMC	2 cut(s)	423, 511
BseXI	GCAGC	2 cut(s)	116, 268
BshFI	GGCC	4 cut(s)	5, 221, 482, 488
BshNI	GGYRCC	1 cut(s)	420
BshVI	ATCGAT	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	4 cut(s)	133, 155, 273, 489
BslI	CCNNNNNNNGG	3 cut(s)	469, 489, 523
BsmAI	GTCTC	2 cut(s)	92, 270
BsmBI	CGTCTC	1 cut(s)	270
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	4 cut(s)	5, 221, 482, 488
Bsp1286I	GDGCHC	3 cut(s)	243, 423, 511
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	6 cut(s)	32, 53, 107, 121, 130, 168
BspANI	GGCC	4 cut(s)	5, 221, 482, 488
BspCNI	CTCAG	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	475
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	422
BspMAI	CTGCAG	1 cut(s)	258
BspPI	GGATC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	420
BsrBI	CCGCTC	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	93, 511
BssECI	CCNNGG	2 cut(s)	48, 483
BssMI	GATC	1 cut(s)	472
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	483
Bst2BI	CACGAG	1 cut(s)	563
Bst6I	CTCTTC	3 cut(s)	33, 147, 195
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	260, 291
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	2 cut(s)	92, 270
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 129, 218, 301, 379
BstPAI	GACNNNNGTC	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	488
BstSFI	CTRYAG	1 cut(s)	254
BstSLI	GKGCMC	2 cut(s)	423, 511
BstV1I	GCAGC	2 cut(s)	116, 268
Bsu15I	ATCGAT	1 cut(s)	475
BsuRI	GGCC	4 cut(s)	5, 221, 482, 488
BsuTUI	ATCGAT	1 cut(s)	475
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	2 cut(s)	100, 518
Cac8I	GCNNGC	1 cut(s)	102
CciI	TCATGA	1 cut(s)	604
ClaI	ATCGAT	1 cut(s)	475
CviAII	CATG	2 cut(s)	518, 605
DdeI	CTNAG	2 cut(s)	260, 291
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
EaeI	YGGCCR	2 cut(s)	3, 480
Eam1104I	CTCTTC	3 cut(s)	33, 147, 195
EarI	CTCTTC	3 cut(s)	33, 147, 195
EciI	GGCGGA	2 cut(s)	68, 110
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	176, 594
EcoICRI	GAGCTC	1 cut(s)	241
EcoRI	GAATTC	2 cut(s)	43, 317
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	2 cut(s)	521, 608
FaiI	YATR	5 cut(s)	66, 68, 77, 519, 606
FatI	CATG	2 cut(s)	517, 604
Fnu4HI	GCNGC	4 cut(s)	105, 130, 168, 257
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	4 cut(s)	105, 130, 168, 257
FspBI	CTAG	2 cut(s)	126, 548
GluI	GCNGC	4 cut(s)	105, 130, 168, 257
HaeIII	GGCC	4 cut(s)	5, 221, 482, 488
HapII	CCGG	4 cut(s)	133, 155, 273, 489
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	2 cut(s)	521, 608
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	4 cut(s)	71, 85, 339, 450
HpaII	CCGG	4 cut(s)	133, 155, 273, 489
HphI	GGTGA	3 cut(s)	82, 262, 454
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	5 cut(s)	49, 238, 316, 438, 498
Hpy188III	TCNNGA	4 cut(s)	194, 463, 563, 605
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	458
HpyAV	CCTTC	2 cut(s)	211, 433
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	5 cut(s)	104, 246, 256, 335, 557
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 129, 218, 301, 379
HpyF3I	CTNAG	2 cut(s)	260, 291
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	521, 608
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	2 cut(s)	175, 544
Lsp1109I	GCAGC	2 cut(s)	116, 268
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	2 cut(s)	126, 548
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	3 cut(s)	22, 157, 361
MalI	GATC	1 cut(s)	474
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	1 cut(s)	472
MboII	GAAGA	6 cut(s)	20, 68, 134, 182, 218, 220
MhlI	GDGCHC	3 cut(s)	243, 423, 511
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	4 cut(s)	43, 306, 317, 558
MluNI	TGGCCA	1 cut(s)	482
MlyI	GAGTC	3 cut(s)	65, 94, 333
Mox20I	TGGCCA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	482
MslI	CAYNNNNRTG	3 cut(s)	95, 368, 590
Msp20I	TGGCCA	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	4 cut(s)	133, 155, 273, 489
MspR9I	CCNGG	1 cut(s)	490
Mva1269I	GAATGC	1 cut(s)	397
MwoI	GCNNNNNNNGC	5 cut(s)	59, 129, 218, 301, 379
NciI	CCSGG	1 cut(s)	490
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	521, 608
NlaIV	GGNNCC	1 cut(s)	422
NmeAIII	GCCGAG	3 cut(s)	31, 106, 247
NmuCI	GTSAC	3 cut(s)	22, 157, 361
OliI	CACNNNNGTG	1 cut(s)	95
PagI	TCATGA	1 cut(s)	604
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	450
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	4 cut(s)	106, 131, 169, 258
PleI	GAGTC	3 cut(s)	65, 93, 333
PpsI	GAGTC	3 cut(s)	65, 93, 333
PshAI	GACNNNNGTC	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	258
RseI	CAYNNNNRTG	3 cut(s)	95, 368, 590
SacI	GAGCTC	1 cut(s)	243
SatI	GCNGC	4 cut(s)	105, 130, 168, 257
Sau3AI	GATC	1 cut(s)	472
SchI	GAGTC	3 cut(s)	65, 94, 333
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	3 cut(s)	243, 423, 511
SetI	ASST	9 cut(s)	18, 243, 261, 282, 300, 404, 444, 525, 549
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	3 cut(s)	95, 368, 590
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	4 cut(s)	43, 306, 317, 558
SsiI	CCGC	6 cut(s)	32, 53, 107, 121, 130, 168
SspMI	CTAG	2 cut(s)	126, 548
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	488
StyI	CCWWGG	1 cut(s)	483
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	453, 475
TasI	AATT	4 cut(s)	43, 306, 317, 558
TauI	GCSGC	2 cut(s)	132, 170
TfiI	GAWTC	1 cut(s)	450
TscAI	CASTG	2 cut(s)	100, 518
TseFI	GTSAC	3 cut(s)	22, 157, 361
TseI	GCWGC	2 cut(s)	104, 256
Tsp45I	GTSAC	3 cut(s)	22, 157, 361
TspDTI	ATGAA	1 cut(s)	256
TspGWI	ACGGA	2 cut(s)	10, 422
TspRI	CASTG	2 cut(s)	100, 518
Van91I	CCANNNNNTGG	1 cut(s)	523
XapI	RAATTY	2 cut(s)	43, 317
XspI	CTAG	2 cut(s)	126, 548
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.