Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003127

Physical Location & Seq

Genomic Coordinates Forward (+)

6210450 .. 6213146

Gene Structure 2697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG042200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTGAGACTTTGTTGTTGGATTAGGAATCATTGTTCTTATGATTGTGACTTGCGGCAGGATCGTGTGTTTGAACTTTTAAAACCTTTTCGCGATATCAAGGCCATATGGCAAGTTAGGGTTGAAGCAAGCAGAGCACTCCTTGATCTTGAATTCCACTGCAAAGGCATTGATGCAGCTTTGGCATTATTTATGAGATATTTAGATGAAGAGCCATCCTTCAGAGGTCAGGTGAAGTTCAGCTGTGCGTGCTATGAGGTTATGCGAGATCGATGTGCAGATAATGCACCGGCTGATATTATCAGTCTTGTTGGTACCAAGGAGTATGACAAATGTGCCAAGGATCTCTTTTACTTTCTTCAGTGTCTTCCCTTTTCTAAGTTGCATCTGGTCTACCATCATAAGCTCGTCTTATTCTGGGAAGTTAAGCTCTTCGGGTTGCTCTCGAAGCCGACCATGTTAAAGATGCTCGGTCTTGCTCATGAAGGATCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Peptidase_M1

Protein Analysis

165

Amino Acids

19.3

Weight (kDa)

8.02

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73960 AT1G73960
fragaria_vesca	FvH4_5g12730
malus_domestica	MD06G1210800.v1.1 MD06G1211000.v1.1 MD14G1221500.v1.1 MD14G1221600.v1.1
prunus_persica	Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1
pyrus_communis	pycom06g18830 pycom14g18330
rosa_chinensis	RchiOBHm_Chr7g0184581
rosa_laevigata	RLG00000003716 RLG00000004966 RLG00000020303
rosa_multiflora	Rmu_ssc0000289.1_g000035
rosa_roxburghii	Rroxscaffold_3G00269500 Rroxscaffold_7G00196400
rosa_rugosa	Rorug06G0007300 Rorug07G0060900
rosa_samantha	Rh2BG075800 Rh2CG077900 Rh5DG337600 Rh5DG495400 Rh6AG042200 Rh6AG254600 Rh7AG079100 Rh7BG068200 Rh7BG189600 Rh7CG069000 Rh7DG068300 Rh7DG191200 Rh7DG191900
rosa_wichuraiana	Rw7G005620 Rw7G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	1 cut(s)	93
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	4 cut(s)	69, 351, 483, 496
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	2 cut(s)	205, 344
AfaI	GTAC	1 cut(s)	316
AgsI	TTSAA	3 cut(s)	74, 125, 152
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
AluBI	AGCT	4 cut(s)	179, 243, 406, 430
AluI	AGCT	4 cut(s)	179, 243, 406, 430
Alw21I	GWGCWC	1 cut(s)	139
AlwI	GGATC	4 cut(s)	69, 351, 483, 496
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	152
Asp718I	GGTACC	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	16, 244
BamHI	GGATCC	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	2 cut(s)	223, 405
BisI	GCNGC	2 cut(s)	56, 177
BlsI	GCNGC	2 cut(s)	57, 178
BmiI	GGNNCC	2 cut(s)	316, 490
BmsI	GCATC	3 cut(s)	163, 394, 456
BpiI	GAAGAC	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	318, 339
Bse118I	RCCGGY	1 cut(s)	289
BseCI	ATCGAT	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	318, 339
BseGI	GGATG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	314
BshVI	ATCGAT	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	290
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	5 cut(s)	61, 145, 268, 343, 488
Bsp68I	TCGCGA	1 cut(s)	93
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	104
BspDI	ATCGAT	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	316, 490
BspPI	GGATC	4 cut(s)	69, 351, 483, 496
BspQI	GCTCTTC	2 cut(s)	204, 437
BspT107I	GGYRCC	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	318, 339
BssMI	GATC	5 cut(s)	61, 145, 268, 343, 488
BssT1I	CCWWGG	2 cut(s)	318, 339
Bst6I	CTCTTC	2 cut(s)	204, 437
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	130, 250
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	5 cut(s)	64, 148, 271, 346, 491
BstMBI	GATC	5 cut(s)	61, 145, 268, 343, 488
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 182, 249, 284, 448
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	2 cut(s)	343, 488
BstYI	RGATCY	2 cut(s)	343, 488
Bsu15I	ATCGAT	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	104
BsuTUI	ATCGAT	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	157, 368
BtuMI	TCGCGA	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	130, 250
CciI	TCATGA	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	289
ClaI	ATCGAT	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	2 cut(s)	457, 482
CviJI	RGCY	8 cut(s)	104, 179, 214, 243, 293, 406, 430, 451
CviKI_1	RGCY	8 cut(s)	104, 179, 214, 243, 293, 406, 430, 451
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	5 cut(s)	63, 147, 270, 345, 490
DpnII	GATC	5 cut(s)	61, 145, 268, 343, 488
DraI	TTTAAA	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	204, 437
EarI	CTCTTC	2 cut(s)	204, 437
Eco130I	CCWWGG	2 cut(s)	318, 339
Eco32I	GATATC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	205, 344
EcoRI	GAATTC	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	2 cut(s)	318, 339
ErhI	CCWWGG	2 cut(s)	318, 339
FaeI	CATG	2 cut(s)	460, 485
FalI	AAGNNNNNCTT	4 cut(s)	332, 364, 395, 427
FatI	CATG	2 cut(s)	456, 481
FauNDI	CATATG	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	56, 177
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	56, 177
GluI	GCNGC	2 cut(s)	56, 177
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	290
Hin1II	CATG	2 cut(s)	460, 485
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	16, 244
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	1 cut(s)	224
Hpy188III	TCNNGA	4 cut(s)	92, 149, 445, 482
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	2 cut(s)	229, 479
HpyCH4V	TGCA	5 cut(s)	162, 176, 278, 287, 385
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 182, 249, 284, 448
HpyF3I	CTNAG	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	460, 485
KpnI	GGTACC	1 cut(s)	318
Kzo9I	GATC	5 cut(s)	61, 145, 268, 343, 488
LguI	GCTCTTC	2 cut(s)	204, 437
LpnPI	CCDG	5 cut(s)	44, 215, 303, 374, 403
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	3 cut(s)	163, 394, 456
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	5 cut(s)	63, 147, 270, 345, 490
MboI	GATC	5 cut(s)	61, 145, 268, 343, 488
MboII	GAAGA	4 cut(s)	221, 350, 359, 424
MflI	RGATCY	2 cut(s)	343, 488
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	1 cut(s)	152
MnlI	CCTC	2 cut(s)	218, 250
MseI	TTAA	3 cut(s)	80, 426, 461
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	5 cut(s)	134, 182, 249, 284, 448
NdeI	CATATG	1 cut(s)	107
NdeII	GATC	5 cut(s)	61, 145, 268, 343, 488
NlaIII	CATG	2 cut(s)	460, 485
NlaIV	GGNNCC	2 cut(s)	316, 490
NmuCI	GTSAC	1 cut(s)	47
NruI	TCGCGA	1 cut(s)	93
PagI	TCATGA	1 cut(s)	481
PciSI	GCTCTTC	2 cut(s)	204, 437
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	57, 178
PspN4I	GGNNCC	2 cut(s)	316, 490
PsuI	RGATCY	2 cut(s)	343, 488
PvuII	CAGCTG	1 cut(s)	243
RruI	TCGCGA	1 cut(s)	93
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SapI	GCTCTTC	2 cut(s)	204, 437
SaqAI	TTAA	3 cut(s)	80, 426, 461
SatI	GCNGC	2 cut(s)	56, 177
Sau3AI	GATC	5 cut(s)	61, 145, 268, 343, 488
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	8 cut(s)	88, 181, 229, 234, 245, 261, 408, 432
SfaNI	GCATC	3 cut(s)	163, 394, 456
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	318, 339
TaqI	TCGA	2 cut(s)	271, 446
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	1 cut(s)	152
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	3 cut(s)	80, 426, 461
Tru9I	TTAA	3 cut(s)	80, 426, 461
TscAI	CASTG	2 cut(s)	164, 368
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	222, 498
TspRI	CASTG	2 cut(s)	164, 368
XapI	RAATTY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.