Transcription initiation factor TFIID
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73960 AT1G73960 |
| fragaria_vesca | FvH4_5g12730 |
| malus_domestica | MD06G1210800.v1.1 MD06G1211000.v1.1 MD14G1221500.v1.1 MD14G1221600.v1.1 |
| prunus_persica | Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 |
| pyrus_communis | pycom06g18830 pycom14g18330 |
| rosa_chinensis | RchiOBHm_Chr7g0184581 |
| rosa_laevigata | RLG00000003716 RLG00000004966 RLG00000020303 |
| rosa_multiflora | Rmu_ssc0000289.1_g000035 |
| rosa_roxburghii | Rroxscaffold_3G00269500 Rroxscaffold_7G00196400 |
| rosa_rugosa | Rorug06G0007300 Rorug07G0060900 |
| rosa_samantha | Rh2BG075800 Rh2CG077900 Rh5DG337600 Rh5DG495400 Rh6AG042200 Rh6AG254600 Rh7AG079100 Rh7BG068200 Rh7BG189600 Rh7CG069000 Rh7DG068300 Rh7DG191200 Rh7DG191900 |
| rosa_wichuraiana | Rw7G005620 Rw7G016350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1166 |
| AarI | CACCTGC | 1 cut(s) | 400 |
| AatII | GACGTC | 1 cut(s) | 287 |
| Acc36I | ACCTGC | 1 cut(s) | 400 |
| AccB1I | GGYRCC | 2 cut(s) | 139, 349 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1766, 1786 |
| AccBSI | CCGCTC | 1 cut(s) | 3194 |
| AccI | GTMKAC | 2 cut(s) | 201, 2197 |
| AccII | CGCG | 4 cut(s) | 170, 308, 1432, 2661 |
| AccIII | TCCGGA | 3 cut(s) | 50, 787, 3469 |
| AclWI | GGATC | 6 cut(s) | 692, 1934, 2854, 3404, 3817, 4124 |
| AcoI | YGGCCR | 1 cut(s) | 309 |
| AcuI | CTGAAG | 5 cut(s) | 149, 474, 2773, 3318, 3977 |
| AcvI | CACGTG | 1 cut(s) | 3049 |
| AcyI | GRCGYC | 2 cut(s) | 33, 284 |
| AdeI | CACNNNGTG | 1 cut(s) | 1299 |
| AflII | CTTAAG | 1 cut(s) | 2504 |
| AflIII | ACRYGT | 3 cut(s) | 816, 1430, 3046 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 59 |
| AhlI | ACTAGT | 1 cut(s) | 2644 |
| AjnI | CCWGG | 6 cut(s) | 678, 1699, 3093, 3202, 4227, 4337 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 461, 493, 2451, 2483, 3338, 3370 |
| Alw21I | GWGCWC | 6 cut(s) | 278, 296, 748, 1622, 2707, 3890 |
| Alw26I | GTCTC | 2 cut(s) | 506, 3144 |
| Alw44I | GTGCAC | 2 cut(s) | 1618, 3886 |
| AlwI | GGATC | 6 cut(s) | 692, 1934, 2854, 3404, 3817, 4124 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 685, 1670, 1786, 2174, 3722 |
| Ama87I | CYCGRG | 3 cut(s) | 1376, 4133, 4343 |
| Aor13HI | TCCGGA | 3 cut(s) | 50, 787, 3469 |
| ApaLI | GTGCAC | 2 cut(s) | 1618, 3886 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 702, 734 |
| AseI | ATTAAT | 3 cut(s) | 366, 1998, 2441 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 783, 1518 |
| AspLEI | GCGC | 1 cut(s) | 1258 |
| AspS9I | GGNCC | 8 cut(s) | 53, 439, 790, 1373, 2583, 2979, 3368, 4341 |
| AsuHPI | GGTGA | 8 cut(s) | 279, 292, 2221, 2812, 2933, 3041, 3930, 4360 |
| AsuII | TTCGAA | 2 cut(s) | 2137, 4399 |
| AsuNHI | GCTAGC | 1 cut(s) | 3707 |
| AvaI | CYCGRG | 3 cut(s) | 1376, 4133, 4343 |
| AvaII | GGWCC | 5 cut(s) | 53, 790, 1373, 2583, 3368 |
| BaeGI | GKGCMC | 2 cut(s) | 1622, 3890 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2542, 2575 |
| BanI | GGYRCC | 2 cut(s) | 139, 349 |
| BanII | GRGCYC | 4 cut(s) | 278, 296, 1420, 4296 |
| BauI | CACGAG | 2 cut(s) | 1045, 4059 |
| BbrPI | CACGTG | 1 cut(s) | 3049 |
| Bbv12I | GWGCWC | 6 cut(s) | 278, 296, 748, 1622, 2707, 3890 |
| BbvCI | CCTCAGC | 2 cut(s) | 1556, 2067 |
| BceAI | ACGGC | 2 cut(s) | 220, 1208 |
| BciT130I | CCWGG | 6 cut(s) | 680, 1701, 3095, 3204, 4229, 4339 |
| BciVI | GTATCC | 3 cut(s) | 970, 2173, 3256 |
| BclI | TGATCA | 1 cut(s) | 1030 |
| BcoDI | GTCTC | 2 cut(s) | 506, 3144 |
| BcuI | ACTAGT | 1 cut(s) | 2644 |
| BfmI | CTRYAG | 3 cut(s) | 721, 855, 2316 |
| BfrI | CTTAAG | 1 cut(s) | 2504 |
| BfuAI | ACCTGC | 1 cut(s) | 400 |
| BfuI | GTATCC | 3 cut(s) | 970, 2173, 3256 |
| BglII | AGATCT | 2 cut(s) | 1442, 3689 |
| BlpI | GCTNAGC | 1 cut(s) | 1259 |
| BmcAI | AGTACT | 2 cut(s) | 227, 1453 |
| Bme1390I | CCNGG | 6 cut(s) | 680, 1701, 3095, 3204, 4229, 4339 |
| Bme18I | GGWCC | 5 cut(s) | 53, 790, 1373, 2583, 3368 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 59 |
| BmeT110I | CYCGRG | 3 cut(s) | 1376, 4133, 4343 |
| BmgT120I | GGNCC | 8 cut(s) | 53, 439, 790, 1373, 2583, 2979, 3368, 4341 |
| BmrFI | CCNGG | 6 cut(s) | 680, 1701, 3095, 3204, 4229, 4339 |
| BmrI | ACTGGG | 1 cut(s) | 4290 |
| BmtI | GCTAGC | 1 cut(s) | 3711 |
| BmuI | ACTGGG | 1 cut(s) | 4290 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1378 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2863, 2895 |
| BpmI | CTGGAG | 8 cut(s) | 292, 644, 1788, 1888, 2149, 3180, 3222, 3258 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1556, 2031, 2067, 3764 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1259 |
| Bpu14I | TTCGAA | 2 cut(s) | 2137, 4399 |
| BpuEI | CTTGAG | 7 cut(s) | 356, 987, 988, 1404, 1514, 2318, 3678 |
| BsaAI | YACGTR | 3 cut(s) | 1613, 2947, 3049 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1712 |
| BsaHI | GRCGYC | 2 cut(s) | 33, 284 |
| BsaWI | WCCGGW | 4 cut(s) | 50, 787, 1750, 3469 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 1761, 1791 |
| Bse118I | RCCGGY | 1 cut(s) | 311 |
| Bse1I | ACTGG | 7 cut(s) | 275, 737, 1550, 1905, 3614, 4286, 4296 |
| Bse3DI | GCAATG | 4 cut(s) | 667, 2055, 3017, 3228 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1712 |
| BseAI | TCCGGA | 3 cut(s) | 50, 787, 3469 |
| BseBI | CCWGG | 6 cut(s) | 680, 1701, 3095, 3204, 4229, 4339 |
| BseJI | GATNNNNATC | 1 cut(s) | 1712 |
| BseMI | GCAATG | 4 cut(s) | 667, 2055, 3017, 3228 |
| BseNI | ACTGG | 7 cut(s) | 275, 737, 1550, 1905, 3614, 4286, 4296 |
| BseSI | GKGCMC | 2 cut(s) | 1622, 3890 |
| BseX3I | CGGCCG | 1 cut(s) | 309 |
| BseYI | CCCAGC | 2 cut(s) | 1142, 1527 |
| BsgI | GTGCAG | 2 cut(s) | 3071, 3995 |
| Bsh1236I | CGCG | 4 cut(s) | 170, 308, 1432, 2661 |
| Bsh1285I | CGRYCG | 1 cut(s) | 312 |
| BshNI | GGYRCC | 2 cut(s) | 139, 349 |
| BsiEI | CGRYCG | 1 cut(s) | 312 |
| BsiHKAI | GWGCWC | 6 cut(s) | 278, 296, 748, 1622, 2707, 3890 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1376, 4133, 4343 |
| BsiSI | CCGG | 6 cut(s) | 51, 143, 312, 788, 1751, 3470 |
| BslFI | GGGAC | 3 cut(s) | 281, 1386, 2569 |
| BsmAI | GTCTC | 2 cut(s) | 506, 3144 |
| BsmBI | CGTCTC | 1 cut(s) | 3144 |
| BsmFI | GGGAC | 3 cut(s) | 281, 1386, 2569 |
| BsoBI | CYCGRG | 3 cut(s) | 1376, 4133, 4343 |
| Bsp119I | TTCGAA | 2 cut(s) | 2137, 4399 |
| Bsp1286I | GDGCHC | 8 cut(s) | 278, 296, 748, 1420, 1622, 2707, 3890, 4296 |
| Bsp13I | TCCGGA | 3 cut(s) | 50, 787, 3469 |
| Bsp1407I | TGTACA | 2 cut(s) | 1984, 3913 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1259 |
| Bsp19I | CCATGG | 3 cut(s) | 3177, 3249, 3540 |
| Bsp68I | TCGCGA | 1 cut(s) | 2661 |
| BspEI | TCCGGA | 3 cut(s) | 50, 787, 3469 |
| BspFNI | CGCG | 4 cut(s) | 170, 308, 1432, 2661 |
| BspHI | TCATGA | 2 cut(s) | 1723, 3799 |
| BspMI | ACCTGC | 1 cut(s) | 400 |
| BspOI | GCTAGC | 1 cut(s) | 3711 |
| BspPI | GGATC | 6 cut(s) | 692, 1934, 2854, 3404, 3817, 4124 |
| BspQI | GCTCTTC | 1 cut(s) | 2772 |
| BspT104I | TTCGAA | 2 cut(s) | 2137, 4399 |
| BspT107I | GGYRCC | 2 cut(s) | 139, 349 |
| BspTI | CTTAAG | 1 cut(s) | 2504 |
| BsrBI | CCGCTC | 1 cut(s) | 3194 |
| BsrDI | GCAATG | 4 cut(s) | 667, 2055, 3017, 3228 |
| BsrFI | RCCGGY | 1 cut(s) | 311 |
| BsrGI | TGTACA | 2 cut(s) | 1984, 3913 |
| BsrI | ACTGG | 7 cut(s) | 275, 737, 1550, 1905, 3614, 4286, 4296 |
| BssAI | RCCGGY | 1 cut(s) | 311 |
| BssNI | GRCGYC | 2 cut(s) | 33, 284 |
| BssSI | CACGAG | 2 cut(s) | 1045, 4059 |
| BssT1I | CCWWGG | 9 cut(s) | 2118, 3177, 3249, 3315, 3447, 3480, 3510, 3540, 3570 |
| Bst2BI | CACGAG | 2 cut(s) | 1045, 4059 |
| Bst2UI | CCWGG | 6 cut(s) | 680, 1701, 3095, 3204, 4229, 4339 |
| Bst6I | CTCTTC | 2 cut(s) | 2505, 2772 |
| BstACI | GRCGYC | 2 cut(s) | 33, 284 |
| BstAFI | CTTAAG | 1 cut(s) | 2504 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 1220, 1299, 1886, 3845, 3854 |
| BstAUI | TGTACA | 2 cut(s) | 1984, 3913 |
| BstBAI | YACGTR | 3 cut(s) | 1613, 2947, 3049 |
| BstBI | TTCGAA | 2 cut(s) | 2137, 4399 |
| BstDSI | CCRYGG | 4 cut(s) | 868, 3177, 3249, 3540 |
| BstFNI | CGCG | 4 cut(s) | 170, 308, 1432, 2661 |
| BstHHI | GCGC | 1 cut(s) | 1258 |
| BstMAI | GTCTC | 2 cut(s) | 506, 3144 |
| BstMCI | CGRYCG | 1 cut(s) | 312 |
| BstNI | CCWGG | 6 cut(s) | 680, 1701, 3095, 3204, 4229, 4339 |
| BstNSI | RCATGY | 4 cut(s) | 820, 2315, 2819, 3707 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1378 |
| BstSCI | CCNGG | 6 cut(s) | 678, 1699, 3093, 3202, 4227, 4337 |
| BstSFI | CTRYAG | 3 cut(s) | 721, 855, 2316 |
| BstSLI | GKGCMC | 2 cut(s) | 1622, 3890 |
| BstUI | CGCG | 4 cut(s) | 170, 308, 1432, 2661 |
| BstX2I | RGATCY | 6 cut(s) | 1442, 1939, 2846, 3409, 3689, 3809 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 800 |
| BstYI | RGATCY | 6 cut(s) | 1442, 1939, 2846, 3409, 3689, 3809 |
| BstZI | CGGCCG | 1 cut(s) | 309 |
| BsuI | GTATCC | 3 cut(s) | 970, 2173, 3256 |
| BtgI | CCRYGG | 4 cut(s) | 868, 3177, 3249, 3540 |
| BtsI | GCAGTG | 4 cut(s) | 1266, 2725, 3888, 3890 |
| BtuMI | TCGCGA | 1 cut(s) | 2661 |
| BveI | ACCTGC | 1 cut(s) | 400 |
| CaiI | CAGNNNCTG | 5 cut(s) | 685, 1670, 1786, 2174, 3722 |
| CciI | TCATGA | 2 cut(s) | 1723, 3799 |
| CfoI | GCGC | 1 cut(s) | 1258 |
| Cfr10I | RCCGGY | 1 cut(s) | 311 |
| Cfr13I | GGNCC | 8 cut(s) | 53, 439, 790, 1373, 2583, 2979, 3368, 4341 |
| CseI | GACGC | 5 cut(s) | 41, 314, 1438, 1487, 1830 |
| CsiI | ACCWGGT | 1 cut(s) | 678 |
| DraIII | CACNNNGTG | 1 cut(s) | 1299 |
| DriI | GACNNNNNGTC | 1 cut(s) | 59 |
| EaeI | YGGCCR | 1 cut(s) | 309 |
| EagI | CGGCCG | 1 cut(s) | 309 |
| Eam1104I | CTCTTC | 2 cut(s) | 2505, 2772 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 59 |
| EarI | CTCTTC | 2 cut(s) | 2505, 2772 |
| EciI | GGCGGA | 2 cut(s) | 53, 690 |
| Ecl136II | GAGCTC | 2 cut(s) | 276, 294 |
| EclXI | CGGCCG | 1 cut(s) | 309 |
| Eco130I | CCWWGG | 9 cut(s) | 2118, 3177, 3249, 3315, 3447, 3480, 3510, 3540, 3570 |
| Eco147I | AGGCCT | 1 cut(s) | 2123 |
| Eco24I | GRGCYC | 4 cut(s) | 278, 296, 1420, 4296 |
| Eco32I | GATATC | 4 cut(s) | 756, 2665, 3487, 3517 |
| Eco47I | GGWCC | 5 cut(s) | 53, 790, 1373, 2583, 3368 |
| Eco52I | CGGCCG | 1 cut(s) | 309 |
| Eco53kI | GAGCTC | 2 cut(s) | 276, 294 |
| Eco57I | CTGAAG | 5 cut(s) | 149, 474, 2773, 3318, 3977 |
| Eco72I | CACGTG | 1 cut(s) | 3049 |
| Eco88I | CYCGRG | 3 cut(s) | 1376, 4133, 4343 |
| EcoICRI | GAGCTC | 2 cut(s) | 276, 294 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1373, 2583, 2979, 3368 |
| EcoRI | GAATTC | 2 cut(s) | 1514, 2720 |
| EcoRII | CCWGG | 6 cut(s) | 678, 1699, 3093, 3202, 4227, 4337 |
| EcoRV | GATATC | 4 cut(s) | 756, 2665, 3487, 3517 |
| EcoT14I | CCWWGG | 9 cut(s) | 2118, 3177, 3249, 3315, 3447, 3480, 3510, 3540, 3570 |
| EcoT38I | GRGCYC | 4 cut(s) | 278, 296, 1420, 4296 |
| ErhI | CCWWGG | 9 cut(s) | 2118, 3177, 3249, 3315, 3447, 3480, 3510, 3540, 3570 |
| Esp3I | CGTCTC | 1 cut(s) | 3144 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3473, 3505, 3503, 3535 |
| FaqI | GGGAC | 3 cut(s) | 281, 1386, 2569 |
| FauI | CCCGC | 2 cut(s) | 1202, 4101 |
| FauNDI | CATATG | 2 cut(s) | 715, 2675 |
| FbaI | TGATCA | 1 cut(s) | 1030 |
| FblI | GTMKAC | 2 cut(s) | 201, 2197 |
| FriOI | GRGCYC | 4 cut(s) | 278, 296, 1420, 4296 |
| GlaI | GCGC | 1 cut(s) | 1257 |
| GsaI | CCCAGC | 2 cut(s) | 1146, 1531 |
| GsuI | CTGGAG | 8 cut(s) | 292, 644, 1788, 1888, 2149, 3180, 3222, 3258 |
| HapII | CCGG | 6 cut(s) | 51, 143, 312, 788, 1751, 3470 |
| HgaI | GACGC | 5 cut(s) | 41, 314, 1438, 1487, 1830 |
| HhaI | GCGC | 1 cut(s) | 1258 |
| Hin1I | GRCGYC | 2 cut(s) | 33, 284 |
| Hin6I | GCGC | 1 cut(s) | 1256 |
| HinP1I | GCGC | 1 cut(s) | 1256 |
| HincII | GTYRAC | 2 cut(s) | 202, 3790 |
| HindII | GTYRAC | 2 cut(s) | 202, 3790 |
| HindIII | AAGCTT | 4 cut(s) | 667, 842, 1850, 3309 |
| HpaI | GTTAAC | 1 cut(s) | 3790 |
| HpaII | CCGG | 6 cut(s) | 51, 143, 312, 788, 1751, 3470 |
| HphI | GGTGA | 8 cut(s) | 279, 292, 2221, 2812, 2933, 3041, 3930, 4360 |
| Hpy99I | CGWCG | 7 cut(s) | 32, 35, 62, 108, 203, 206, 217 |
| HpyCH4IV | ACGT | 6 cut(s) | 284, 1612, 2946, 3048, 3153, 4233 |
| HpySE526I | ACGT | 6 cut(s) | 284, 1612, 2946, 3048, 3153, 4233 |
| Hsp92I | GRCGYC | 2 cut(s) | 33, 284 |
| HspAI | GCGC | 1 cut(s) | 1256 |
| KflI | GGGWCCC | 1 cut(s) | 1373 |
| Kpn2I | TCCGGA | 3 cut(s) | 50, 787, 3469 |
| Ksp22I | TGATCA | 1 cut(s) | 1030 |
| KspAI | GTTAAC | 1 cut(s) | 3790 |
| LguI | GCTCTTC | 1 cut(s) | 2772 |
| MabI | ACCWGGT | 1 cut(s) | 678 |
| MaeII | ACGT | 6 cut(s) | 284, 1612, 2946, 3048, 3153, 4233 |
| MbiI | CCGCTC | 1 cut(s) | 3194 |
| MfeI | CAATTG | 1 cut(s) | 2043 |
| MflI | RGATCY | 6 cut(s) | 1442, 1939, 2846, 3409, 3689, 3809 |
| MhlI | GDGCHC | 8 cut(s) | 278, 296, 748, 1420, 1622, 2707, 3890, 4296 |
| MluI | ACGCGT | 1 cut(s) | 1430 |
| MlyI | GAGTC | 4 cut(s) | 1388, 2108, 2244, 2872 |
| MmeI | TCCRAC | 5 cut(s) | 1338, 1611, 1986, 2434, 3615 |
| MroI | TCCGGA | 3 cut(s) | 50, 787, 3469 |
| MroXI | GAANNNNTTC | 2 cut(s) | 783, 1518 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1625, 3117, 3123, 3804, 4125 |
| MspA1I | CMGCKG | 3 cut(s) | 1783, 2574, 3419 |
| MspCI | CTTAAG | 1 cut(s) | 2504 |
| MspI | CCGG | 6 cut(s) | 51, 143, 312, 788, 1751, 3470 |
| MspR9I | CCNGG | 6 cut(s) | 680, 1701, 3095, 3204, 4229, 4339 |
| MunI | CAATTG | 1 cut(s) | 2043 |
| MvaI | CCWGG | 6 cut(s) | 680, 1701, 3095, 3204, 4229, 4339 |
| MvnI | CGCG | 4 cut(s) | 170, 308, 1432, 2661 |
| NcoI | CCATGG | 3 cut(s) | 3177, 3249, 3540 |
| NdeI | CATATG | 2 cut(s) | 715, 2675 |
| NheI | GCTAGC | 1 cut(s) | 3707 |
| NmuCI | GTSAC | 7 cut(s) | 280, 285, 1679, 2209, 2939, 3596, 4205 |
| NruI | TCGCGA | 1 cut(s) | 2661 |
| NspI | RCATGY | 4 cut(s) | 820, 2315, 2819, 3707 |
| NspV | TTCGAA | 2 cut(s) | 2137, 4399 |
| PaeI | GCATGC | 2 cut(s) | 2819, 3707 |
| PagI | TCATGA | 2 cut(s) | 1723, 3799 |
| PaqCI | CACCTGC | 1 cut(s) | 400 |
| PceI | AGGCCT | 1 cut(s) | 2123 |
| PciI | ACATGT | 1 cut(s) | 816 |
| PciSI | GCTCTTC | 1 cut(s) | 2772 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 39 |
| PdmI | GAANNNNTTC | 2 cut(s) | 783, 1518 |
| PfeI | GAWTC | 8 cut(s) | 251, 643, 1634, 1667, 1913, 2057, 3896, 4378 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1766, 1786 |
| PleI | GAGTC | 4 cut(s) | 1387, 2108, 2244, 2872 |
| PmaCI | CACGTG | 1 cut(s) | 3049 |
| PmlI | CACGTG | 1 cut(s) | 3049 |
| PpsI | GAGTC | 4 cut(s) | 1387, 2108, 2244, 2872 |
| Ppu21I | YACGTR | 3 cut(s) | 1613, 2947, 3049 |
| PpuMI | RGGWCCY | 3 cut(s) | 1373, 2583, 3368 |
| PscI | ACATGT | 1 cut(s) | 816 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1378 |
| PshBI | ATTAAT | 3 cut(s) | 366, 1998, 2441 |
| PsiI | TTATAA | 1 cut(s) | 1166 |
| Psp124BI | GAGCTC | 2 cut(s) | 278, 296 |
| Psp5II | RGGWCCY | 3 cut(s) | 1373, 2583, 3368 |
| Psp6I | CCWGG | 6 cut(s) | 678, 1699, 3093, 3202, 4227, 4337 |
| PspCI | CACGTG | 1 cut(s) | 3049 |
| PspFI | CCCAGC | 2 cut(s) | 1142, 1527 |
| PspGI | CCWGG | 6 cut(s) | 678, 1699, 3093, 3202, 4227, 4337 |
| PspPI | GGNCC | 8 cut(s) | 53, 439, 790, 1373, 2583, 2979, 3368, 4341 |
| PspPPI | RGGWCCY | 3 cut(s) | 1373, 2583, 3368 |
| PstNI | CAGNNNCTG | 5 cut(s) | 685, 1670, 1786, 2174, 3722 |
| PsuI | RGATCY | 6 cut(s) | 1442, 1939, 2846, 3409, 3689, 3809 |
| PvuII | CAGCTG | 2 cut(s) | 1783, 2574 |
| RruI | TCGCGA | 1 cut(s) | 2661 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1625, 3117, 3123, 3804, 4125 |
| SacI | GAGCTC | 2 cut(s) | 278, 296 |
| SalI | GTCGAC | 1 cut(s) | 200 |
| SapI | GCTCTTC | 1 cut(s) | 2772 |
| Sau96I | GGNCC | 8 cut(s) | 53, 439, 790, 1373, 2583, 2979, 3368, 4341 |
| ScaI | AGTACT | 2 cut(s) | 227, 1453 |
| SchI | GAGTC | 4 cut(s) | 1388, 2108, 2244, 2872 |
| ScrFI | CCNGG | 6 cut(s) | 680, 1701, 3095, 3204, 4229, 4339 |
| SduI | GDGCHC | 8 cut(s) | 278, 296, 748, 1420, 1622, 2707, 3890, 4296 |
| SexAI | ACCWGGT | 1 cut(s) | 678 |
| SfcI | CTRYAG | 3 cut(s) | 721, 855, 2316 |
| SfuI | TTCGAA | 2 cut(s) | 2137, 4399 |
| SgrDI | CGTCGACG | 1 cut(s) | 200 |
| SinI | GGWCC | 5 cut(s) | 53, 790, 1373, 2583, 3368 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1625, 3117, 3123, 3804, 4125 |
| SmlI | CTYRAG | 8 cut(s) | 335, 967, 1002, 1419, 1493, 2297, 2504, 3693 |
| SmoI | CTYRAG | 8 cut(s) | 335, 967, 1002, 1419, 1493, 2297, 2504, 3693 |
| SpeI | ACTAGT | 1 cut(s) | 2644 |
| SphI | GCATGC | 2 cut(s) | 2819, 3707 |
| SseBI | AGGCCT | 1 cut(s) | 2123 |
| SstI | GAGCTC | 2 cut(s) | 278, 296 |
| StuI | AGGCCT | 1 cut(s) | 2123 |
| StyD4I | CCNGG | 6 cut(s) | 678, 1699, 3093, 3202, 4227, 4337 |
| StyI | CCWWGG | 9 cut(s) | 2118, 3177, 3249, 3315, 3447, 3480, 3510, 3540, 3570 |
| TaiI | ACGT | 6 cut(s) | 287, 1615, 2949, 3051, 3156, 4236 |
| TatI | WGTACW | 7 cut(s) | 225, 400, 1451, 1984, 2388, 3913, 4051 |
| TauI | GCSGC | 3 cut(s) | 311, 440, 565 |
| TfiI | GAWTC | 8 cut(s) | 251, 643, 1634, 1667, 1913, 2057, 3896, 4378 |
| TseFI | GTSAC | 7 cut(s) | 280, 285, 1679, 2209, 2939, 3596, 4205 |
| Tsp45I | GTSAC | 7 cut(s) | 280, 285, 1679, 2209, 2939, 3596, 4205 |
| TspGWI | ACGGA | 7 cut(s) | 187, 230, 655, 1376, 1908, 2198, 3619 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1766, 1786 |
| Vha464I | CTTAAG | 1 cut(s) | 2504 |
| VneI | GTGCAC | 2 cut(s) | 1618, 3886 |
| VpaK11BI | GGWCC | 5 cut(s) | 53, 790, 1373, 2583, 3368 |
| VspI | ATTAAT | 3 cut(s) | 366, 1998, 2441 |
| XceI | RCATGY | 4 cut(s) | 820, 2315, 2819, 3707 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 3119, 3154, 3454, 3547 |
| XmiI | GTMKAC | 2 cut(s) | 201, 2197 |
| XmnI | GAANNNNTTC | 2 cut(s) | 783, 1518 |
| ZraI | GACGTC | 1 cut(s) | 285 |
| ZrmI | AGTACT | 2 cut(s) | 227, 1453 |