MD06G1211000.v1.1

Transcription initiation factor TFIID

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0003127
Physical Location & Seq
Forward (+)
34351552 .. 34361655
10104 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1211000.v1.1.491

Sequence Viewer

Length: 3777 bp
ATGGGACAATCTCTATTGTTAAGGGCAATATACAGCATGAAAGTTTTGAGCAAGGATGATCCTCCTCGCAAAACATATGTTTATAGATTAGATGTTCCAGTTAGCGCTCGGTGGATATCTTTGGTGGTTGCGCCTTTTGAAATCCTTCCTGATCAGCAATTTGGTCTAATATCTCACATGTGCTTGCCCATTAATCTGTCGAAGCTTCGGAATACTGTAGAGTTTTTCCATAGTGCATTTAGCTGTTATAAGGATTACCTTGCGATAGAATTTCCTTTTGGGTCATACAAGCAAGTTTTTATTGAGCCCGAGATGGCAGTATCATCATTAAGTTCGGGGGCGTCCATGAGCGTTTTTAGTTCTCAAGTTTTATTTGATGAGAAGATCATTGATCAGACCATTGACACGAGGATTAAACTTGCGTTTGCTCTTGCAAGACAATGGTTTGGTGTCTATATCACTCCCGAGGCACCTAATGATGAGTGGCTGCTGGACGGTCTTGCTGGGTTTTTGACAGATTTTTTTATCAAAAAACATTTGGGAAATAATGAAGCCCGCTACCGGAGATACAAGGCAAATTGTGCTGTTTGCAAAGCAGATGATAGTGGTGCAACCGCTTTAAGTTCTGCTGCTTCTTGTAAGGATTTGTATGGAACTCAATGCATTGGAATATACAGCAAAATTAGGTCATGGAAATCTGTGGCAATCCTTCAAATGCTGGAAAAGCAGATGGGACCAGAGTCTTTTCGTAAAATTTTGCAGGCAATAGTTAATAGGGCTCCAGATAAGATCCGTTCTTTAAGATCCCTTAGTACGAAGGAGTTTAGGCATTTTGCTAATAAGGTTGGCAATCTTGAGCGTCCATTTCTTAAAGAATTTTTTCCTCGCTGGGTGGAATTGTGTGGTTGTCCACTGCTGAGGATGGGCTTCTCCTATAACAAGAGGAAGAATATGGTTGAATTGGCAGTGTTACGTGGATGCACAGGCGGATCAGATTCAATTGCTTCAGCAGTTAATGCAAATCCAGAACCTGAAAAGCGAGATATTGACAATGGATGGCCTGGAATGATGAGCATCAGGGCTCACGAACTTGATGGTACGTTTGATCATCCAGTTCTGCCAATGGCTGGAGAAACGTGGCAGCTGCTGGAAATACAATGCCATTCAAAGCTTGCTGCTAGACGCTTTCAGAAGCCTAAAAAGAGTTCAAAACTAGATGGGGCTGATGATAATGGGGATGCTACGCCAGCTCTAGACATTCGTTCTAGTATGGAGTCACCGTTGTTGTGGATGAGGGCAGACCCGGAAATTGAATATCTTGCTGAAATTCATTTCAATCAACCTGTACAGATGTGGATTAATCAGTTGGAGAAGGACAAAGATGTCGTTGCACAGGCACAAGCAATTGCAACACTGGAGTCTCTACCACAGCTTTCCTTTTCTGTTGTTAACGCTCTGAATAATTTCCTCATTGACTCCAAGGCCTTTTGGAGAGTTCGAATTGAGGCCGCGTTTGCTTTGGCTAATACAGCATCTGAGGATACTGATTGGGCTGGTCTACTCCATTTAGTGAAATTTTATAAAAGCCGAAGGTTTGATGCAAACATTGGACTGCCCAAGCCAAATGACTTCCATGACATTTCTGAGTACTTTGTTCTTGAGGCCATTCCTCATGCTATTGCTATGGTCAGAGCTGCTGACAAGAAAAGTCCAAGAGAGGCTGTAGAGTTTGTTTTACAACTTTTGAAGTACAATGACAACAATGGGAACCCTTACTCTGATGTCTTCTGGCTTGCTGCATTAATTGAGTCTGTTGGAGAACTTGAATTTGGGCAACAGAGTATTCTCCTTTTATCGTCTCTTCTGAAGCGCATTGATCGCCTCTTGCAATTTGACAGGTTGATGCCTAGTTACAATGGTATCTTGTCGATCAGTTGTATTAGGGCCCTGACACAGATTGCCCTAAAACTGTTGGGATTTGTTCCTATGCTCTTTGACTTGCTACAGGATCGCGTGTTTGAACTTGTAAAACCTTTTCGGGATATCAAGGCAGTATGGCAAGTTCGGGTTGAAGCAAGCAGAGCACTCCTTGATCTTGAATTCCATTGTAAAGGCATTGATGCAGCTTTGCAACTGTTTATCAAATATTTAGATGAAGAGATGTCCTTCCGAGGGCAGGTGAAGCTGGCCATGCATGCTATGAGGTTATGCCAGATTAGAGGTGGATCTGATCTTACTGACAACATCAGGAGCGAAACTCTTGTGGCTTTGCTTCGTCTACTTGAAGGCCAGATGGCTTTTAATAATATCTTTCTTCGTCATCACTTATTCTGCATCCTACAAATCCTTGCCGGAAGGCCGCCAACACTATATGGAGTGCCAAGAGATCATAAACCATTTCATTTAGGTGATGCGGAAAGCTTCCAAGAGCAGAAAAACATCTTTGCTGCTTTCATTCCAGAAAGTAAATATGTGGAACCACCTTCCGAAGCTCCAAACCTTTCACATGATGATTTAACTGCCCCTGAAACTTCCAGAGATGTTTTCGCTGCTCCAGAAATTTTTACAGATGGGTTTTCTATTCCAGCTCCAGAAACTTCCAGGGACGGGTTTGCCTTTCCAGCTGCTTCCAAGGATGATTTGGGTGCTCCAGAACCTACAACTGATGGTTTTGGTGCTCCAGAACCTCCTGGTGGTGGTTTGGGTGATCCAGAACCTTCTGGTGGCAGTTTGGTCTCTAAAGAACCTTCCATTGGTGGTTTTGGTGCTCCAGAACCTCCGATTGGTAGTTTTGATGGCTTAACGGTTTCAGAACCTATCAAGGATAGCTTGGCAGTTCTGGAACCTTTCAAGGACAGCTCGGCTGTTCTCGAATCTTTCAAGGACGCAGATACCGTTTCTAACAGCCATAAACGGAAGCTGACGGTTAAGATCAGGGTCAAAAGTTCTGCTACTACTAGCAGAGCAGAAGGTGATAATCAAACTGTTGAGAGGTCGCAAGGTGGGCATCTTGAAACTGATCGTGGCGCCAGCAGTTCAGTATCTGTGGATGCTCCGCACAAAATTTTTGCAGAGGTGAGCCTTAGCAATCAAAATCTTGAGGAAGTTAACTCTTGGCATGATCTTGGATCCCGGATGACTGCCAGCATTGGTAGCGCAAAACTTGCTAGCGATGTCGATGATATAGGAAAGGAATTGCAGTGCACTGCCGATTCTAGCAAAGTTTCTGCACTGCCTCAGCCCGAAGATCCATCACCTAGCTTTATCCAAGATAACCGAGATGCAGAAGTACAGAAGTATGCAAGTCTCCAAGAACTTTCAGTTCCTAGGACCGATATTAATGGTGGTTCATCTGGAATGGCGGATTCTCTTCCTCGCGGGAAAGAAAAGGAGAAAAAGAAAGACAAGGAAAAGAAACGAAAGCGGGATGGCCACAAGGGCCACCGAGATAATCCCGAGTATTTGGAGCGGAAGCGCCTAAAGAAGGAGAAAAAGCACAAGGAGAAAGAAATAGCGAAGTTGTTGAACGAGAGCGCCAAAGTACCATCGACGGAGCTACCAAGCAAGACGGAGGTACTTGGAGTGAAGTCGGCAACTGTGCAACTCAAACCGGTCGAGCCTGGCGGTTCCAACAAATTGGCGATCACAGGGGTTGAAACCGCCAGGCCTGCGCCATCCGAAGGCGCCACTTCCGCTACTCCTTCCGGTACAACTTCCGCTACTCCCAAGTTTCGTATCAAGACAAAGATCCGAACACTGAACAATAGCAATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Peptidase_M1

Protein Analysis

1259

Amino Acids

139.52

Weight (kDa)

6.54

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M1 PF01433 76 - 259 4.9e-13 Peptidase family M1 domain
TAF2_3rd PF25316 301 - 448 4.7e-38 TAF2 Ig-like domain
TPR_TAF2_C PF25577 451 - 756 2.1e-37 TAF2-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 249, 1581
AarI CACCTGC 1 cut(s) 2167
AasI GACNNNNNNGTC 1 cut(s) 1382
Acc36I ACCTGC 1 cut(s) 2167
AccB1I GGYRCC 3 cut(s) 469, 3026, 3683
AccB7I CCANNNNNTGG 1 cut(s) 1127
AccBSI CCGCTC 1 cut(s) 3469
AccI GTMKAC 2 cut(s) 1558, 2278
AccII CGCG 3 cut(s) 1511, 2013, 3378
AcoI YGGCCR 2 cut(s) 2187, 3430
AcsI RAATTY 9 cut(s) 269, 753, 875, 1326, 1574, 1826, 2099, 2559, 3063
AcuI CTGAAG 2 cut(s) 990, 1886
AcyI GRCGYC 3 cut(s) 341, 3027, 3684
AfaI GTAC 9 cut(s) 814, 1099, 1347, 1649, 1751, 3291, 3543, 3576, 3709
AfeI AGCGCT 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 177
AgeI ACCGGT 1 cut(s) 3610
AjnI CCWGG 5 cut(s) 1060, 2600, 2689, 3619, 3662
AjuI GAANNNNNNNTTGG 8 cut(s) 261, 293, 1812, 1844, 2736, 2766, 2768, 2798
Alw21I GWGCWC 5 cut(s) 2086, 2650, 2680, 2770, 3206
Alw26I GTCTC 4 cut(s) 1425, 1863, 2740, 3311
Alw44I GTGCAC 1 cut(s) 3202
AlwNI CAGNNNCTG 4 cut(s) 1031, 1147, 1535, 3044
Ama87I CYCGRG 3 cut(s) 308, 464, 3455
Aor51HI AGCGCT 1 cut(s) 106
ApaI GGGCCC 1 cut(s) 1948
ApaLI GTGCAC 1 cut(s) 3202
ApoI RAATTY 9 cut(s) 269, 753, 875, 1326, 1574, 1826, 2099, 2559, 3063
AseI ATTAAT 4 cut(s) 192, 1359, 1802, 3339
AsiGI ACCGGT 1 cut(s) 3610
Asp700I GAANNNNTTC 3 cut(s) 144, 879, 1463
AspA2I CCTAGG 1 cut(s) 3326
AspLEI GCGC 9 cut(s) 107, 133, 1872, 3029, 3158, 3477, 3536, 3673, 3686
AspS9I GGNCC 5 cut(s) 734, 1944, 1945, 3330, 3439
AsuC2I CCSGG 2 cut(s) 1304, 3133
AsuHPI GGTGA 7 cut(s) 1269, 2191, 2420, 2717, 2984, 3088, 3246
AsuII TTCGAA 1 cut(s) 1498
AsuNHI GCTAGC 1 cut(s) 3167
AvaI CYCGRG 3 cut(s) 308, 464, 3455
AvaII GGWCC 2 cut(s) 734, 3330
AvrII CCTAGG 1 cut(s) 3326
BaeGI GKGCMC 2 cut(s) 1948, 3206
BaeI ACNNNNGTAYC 2 cut(s) 1903, 1936
BalI TGGCCA 2 cut(s) 2189, 3432
BamHI GGATCC 1 cut(s) 3128
BanI GGYRCC 3 cut(s) 469, 3026, 3683
BanII GRGCYC 4 cut(s) 309, 781, 1084, 1948
BauI CACGAG 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 1777
Bbv12I GWGCWC 5 cut(s) 2086, 2650, 2680, 2770, 3206
BbvCI CCTCAGC 2 cut(s) 917, 3237
BciT130I CCWGG 5 cut(s) 1062, 2602, 2691, 3621, 3664
BciVI GTATCC 1 cut(s) 1534
BclI TGATCA 3 cut(s) 151, 391, 1105
BcnI CCSGG 2 cut(s) 1304, 3133
BcoDI GTCTC 4 cut(s) 1425, 1863, 2740, 3311
BfmI CTRYAG 3 cut(s) 216, 1722, 2003
BfoI RGCGCY 5 cut(s) 108, 3030, 3478, 3537, 3687
BfuAI ACCTGC 1 cut(s) 2167
BfuI GTATCC 1 cut(s) 1534
BglI GCCNNNNNGGC 1 cut(s) 3438
BlnI CCTAGG 1 cut(s) 3326
BmcAI AGTACT 1 cut(s) 1649
Bme1390I CCNGG 7 cut(s) 1062, 1304, 2602, 2691, 3133, 3621, 3664
Bme18I GGWCC 2 cut(s) 734, 3330
BmeT110I CYCGRG 3 cut(s) 308, 464, 3455
BmgT120I GGNCC 5 cut(s) 734, 1944, 1945, 3330, 3439
BmrFI CCNGG 7 cut(s) 1062, 1304, 2602, 2691, 3133, 3621, 3664
BmtI GCTAGC 1 cut(s) 3171
BoxI GACNNNNGTC 1 cut(s) 739
BpiI GAAGAC 1 cut(s) 1777
BplI GAGNNNNNCTC 2 cut(s) 2242, 2274
BpmI CTGGAG 8 cut(s) 765, 1149, 1436, 2538, 2574, 2634, 2664, 2754
Bpu10I CCTNAGC 3 cut(s) 917, 3083, 3237
Bpu14I TTCGAA 1 cut(s) 1498
BpuEI CTTGAG 4 cut(s) 348, 875, 1679, 3119
BpuMI CCSGG 2 cut(s) 1304, 3133
BsaAI YACGTR 1 cut(s) 974
BsaBI GATNNNNATC 1 cut(s) 1073
BsaHI GRCGYC 3 cut(s) 341, 3027, 3684
BsaI GGTCTC 1 cut(s) 2740
BsaJI CCNNGG 6 cut(s) 465, 1479, 2170, 2601, 2631, 3326
BsaWI WCCGGW 3 cut(s) 561, 3610, 3704
BsaXI ACNNNNNCTCC 2 cut(s) 1265, 1295
Bse118I RCCGGY 1 cut(s) 3610
Bse1I ACTGG 3 cut(s) 98, 1112, 1419
Bse8I GATNNNNATC 1 cut(s) 1073
BseBI CCWGG 5 cut(s) 1062, 2602, 2691, 3621, 3664
BseDI CCNNGG 6 cut(s) 465, 1479, 2170, 2601, 2631, 3326
BseJI GATNNNNATC 1 cut(s) 1073
BseMII CTCAG 4 cut(s) 908, 1527, 1635, 3251
BseNI ACTGG 3 cut(s) 98, 1112, 1419
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 2 cut(s) 1948, 3206
BseYI CCCAGC 2 cut(s) 503, 888
BsgI GTGCAG 1 cut(s) 3213
Bsh1236I CGCG 3 cut(s) 1511, 2013, 3378
Bsh1285I CGRYCG 1 cut(s) 3615
BshNI GGYRCC 3 cut(s) 469, 3026, 3683
BshTI ACCGGT 1 cut(s) 3610
BsiEI CGRYCG 1 cut(s) 3615
BsiHKAI GWGCWC 5 cut(s) 2086, 2650, 2680, 2770, 3206
BsiHKCI CYCGRG 3 cut(s) 308, 464, 3455
BsiSI CCGG 6 cut(s) 562, 1304, 2352, 3133, 3611, 3705
BslFI GGGAC 3 cut(s) 18, 747, 2618
BsmAI GTCTC 4 cut(s) 1425, 1863, 2740, 3311
BsmBI CGTCTC 1 cut(s) 1863
BsmFI GGGAC 3 cut(s) 18, 747, 2618
Bso31I GGTCTC 1 cut(s) 2740
BsoBI CYCGRG 3 cut(s) 308, 464, 3455
Bsp119I TTCGAA 1 cut(s) 1498
Bsp120I GGGCCC 1 cut(s) 1944
Bsp1286I GDGCHC 9 cut(s) 309, 781, 1084, 1948, 2086, 2650, 2680, 2770, 3206
Bsp1407I TGTACA 1 cut(s) 1345
BspCNI CTCAG 4 cut(s) 909, 1528, 1636, 3250
BspFNI CGCG 3 cut(s) 1511, 2013, 3378
BspMI ACCTGC 1 cut(s) 2167
BspOI GCTAGC 1 cut(s) 3171
BspT104I TTCGAA 1 cut(s) 1498
BspT107I GGYRCC 3 cut(s) 469, 3026, 3683
BspTNI GGTCTC 1 cut(s) 2740
BsrBI CCGCTC 1 cut(s) 3469
BsrFI RCCGGY 1 cut(s) 3610
BsrGI TGTACA 1 cut(s) 1345
BsrI ACTGG 3 cut(s) 98, 1112, 1419
BssAI RCCGGY 1 cut(s) 3610
BssECI CCNNGG 6 cut(s) 465, 1479, 2170, 2601, 2631, 3326
BssNI GRCGYC 3 cut(s) 341, 3027, 3684
BssSI CACGAG 1 cut(s) 406
BssT1I CCWWGG 3 cut(s) 1479, 2631, 3326
Bst2BI CACGAG 1 cut(s) 406
Bst2UI CCWGG 5 cut(s) 1062, 2602, 2691, 3621, 3664
Bst6I CTCTTC 3 cut(s) 1866, 2151, 3375
BstACI GRCGYC 3 cut(s) 341, 3027, 3684
BstAPI GCANNNNNTGC 3 cut(s) 581, 1016, 3164
BstAUI TGTACA 1 cut(s) 1345
BstBAI YACGTR 1 cut(s) 974
BstBI TTCGAA 1 cut(s) 1498
BstDEI CTNAG 6 cut(s) 809, 917, 1536, 1644, 3083, 3237
BstENI CCTNNNNNAGG 1 cut(s) 3482
BstFNI CGCG 3 cut(s) 1511, 2013, 3378
BstH2I RGCGCY 5 cut(s) 108, 3030, 3478, 3537, 3687
BstHHI GCGC 9 cut(s) 107, 133, 1872, 3029, 3158, 3477, 3536, 3673, 3686
BstMAI GTCTC 4 cut(s) 1425, 1863, 2740, 3311
BstMCI CGRYCG 1 cut(s) 3615
BstNI CCWGG 5 cut(s) 1062, 2602, 2691, 3621, 3664
BstNSI RCATGY 2 cut(s) 181, 2198
BstPAI GACNNNNGTC 1 cut(s) 739
BstSCI CCNGG 7 cut(s) 1060, 1302, 2600, 2689, 3131, 3619, 3662
BstSFI CTRYAG 3 cut(s) 216, 1722, 2003
BstSLI GKGCMC 2 cut(s) 1948, 3206
BstUI CGCG 3 cut(s) 1511, 2013, 3378
BstV2I GAAGAC 1 cut(s) 1777
BstX2I RGATCY 6 cut(s) 789, 803, 2225, 3128, 3247, 3747
BstXI CCANNNNNNTGG 1 cut(s) 3637
BstYI RGATCY 6 cut(s) 789, 803, 2225, 3128, 3247, 3747
BsuI GTATCC 1 cut(s) 1534
BtgZI GCGATG 1 cut(s) 3186
BtsI GCAGTG 5 cut(s) 911, 972, 3204, 3206, 3230
BtsIMutI CAGTG 7 cut(s) 911, 972, 1412, 3204, 3206, 3230, 3755
BveI ACCTGC 1 cut(s) 2167
CaiI CAGNNNCTG 4 cut(s) 1031, 1147, 1535, 3044
CfoI GCGC 9 cut(s) 107, 133, 1872, 3029, 3158, 3477, 3536, 3673, 3686
Cfr10I RCCGGY 1 cut(s) 3610
Cfr13I GGNCC 5 cut(s) 734, 1944, 1945, 3330, 3439
CseI GACGC 4 cut(s) 330, 848, 1191, 2894
Csp6I GTAC 9 cut(s) 813, 1098, 1346, 1648, 1750, 3290, 3542, 3575, 3708
CspAI ACCGGT 1 cut(s) 3610
CviQI GTAC 9 cut(s) 813, 1098, 1346, 1648, 1750, 3290, 3542, 3575, 3708
DdeI CTNAG 6 cut(s) 809, 917, 1536, 1644, 3083, 3237
DinI GGCGCC 2 cut(s) 3028, 3685
DrdI GACNNNNNNGTC 1 cut(s) 1382
DseDI GACNNNNNNGTC 1 cut(s) 1382
EaeI YGGCCR 2 cut(s) 2187, 3430
Eam1104I CTCTTC 3 cut(s) 1866, 2151, 3375
EarI CTCTTC 3 cut(s) 1866, 2151, 3375
EciI GGCGGA 2 cut(s) 1002, 3377
Eco130I CCWWGG 3 cut(s) 1479, 2631, 3326
Eco147I AGGCCT 2 cut(s) 1484, 3667
Eco24I GRGCYC 4 cut(s) 309, 781, 1084, 1948
Eco31I GGTCTC 1 cut(s) 2740
Eco32I GATATC 2 cut(s) 117, 2044
Eco47I GGWCC 2 cut(s) 734, 3330
Eco47III AGCGCT 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 990, 1886
Eco88I CYCGRG 3 cut(s) 308, 464, 3455
EcoNI CCTNNNNNAGG 1 cut(s) 3482
EcoO109I RGGNCCY 2 cut(s) 1944, 1945
EcoRI GAATTC 1 cut(s) 2099
EcoRII CCWGG 5 cut(s) 1060, 2600, 2689, 3619, 3662
EcoRV GATATC 2 cut(s) 117, 2044
EcoT14I CCWWGG 3 cut(s) 1479, 2631, 3326
EcoT22I ATGCAT 2 cut(s) 665, 2196
EcoT38I GRGCYC 4 cut(s) 309, 781, 1084, 1948
EgeI GGCGCC 2 cut(s) 3028, 3685
EheI GGCGCC 2 cut(s) 3028, 3685
ErhI CCWWGG 3 cut(s) 1479, 2631, 3326
Esp3I CGTCTC 1 cut(s) 1863
FalI AAGNNNNNCTT 2 cut(s) 2813, 2845
FaqI GGGAC 3 cut(s) 18, 747, 2618
FauI CCCGC 3 cut(s) 563, 3371, 3417
FauNDI CATATG 1 cut(s) 76
FbaI TGATCA 3 cut(s) 151, 391, 1105
FblI GTMKAC 2 cut(s) 1558, 2278
FriOI GRGCYC 4 cut(s) 309, 781, 1084, 1948
GlaI GCGC 9 cut(s) 106, 132, 1871, 3028, 3157, 3476, 3535, 3672, 3685
GsaI CCCAGC 2 cut(s) 507, 892
GsuI CTGGAG 8 cut(s) 765, 1149, 1436, 2538, 2574, 2634, 2664, 2754
HaeII RGCGCY 5 cut(s) 108, 3030, 3478, 3537, 3687
HapII CCGG 6 cut(s) 562, 1304, 2352, 3133, 3611, 3705
HgaI GACGC 4 cut(s) 330, 848, 1191, 2894
HhaI GCGC 9 cut(s) 107, 133, 1872, 3029, 3158, 3477, 3536, 3673, 3686
Hin1I GRCGYC 3 cut(s) 341, 3027, 3684
Hin6I GCGC 9 cut(s) 105, 131, 1870, 3027, 3156, 3475, 3534, 3671, 3684
HinP1I GCGC 9 cut(s) 105, 131, 1870, 3027, 3156, 3475, 3534, 3671, 3684
HincII GTYRAC 2 cut(s) 1450, 3109
HindII GTYRAC 2 cut(s) 1450, 3109
HindIII AAGCTT 3 cut(s) 203, 1169, 2419
HinfI GANTC 9 cut(s) 740, 995, 1274, 1418, 1475, 1808, 2873, 3212, 3365
HpaI GTTAAC 2 cut(s) 1450, 3109
HpaII CCGG 6 cut(s) 562, 1304, 2352, 3133, 3611, 3705
HphI GGTGA 7 cut(s) 1269, 2191, 2420, 2717, 2984, 3088, 3246
Hpy166II GTNNAC 6 cut(s) 911, 1450, 1559, 2279, 3109, 3204
Hpy8I GTNNAC 6 cut(s) 911, 1450, 1559, 2279, 3109, 3204
Hpy99I CGWCG 1 cut(s) 3553
HpyCH4IV ACGT 3 cut(s) 973, 1100, 1136
HpyF3I CTNAG 6 cut(s) 809, 917, 1536, 1644, 3083, 3237
HpySE526I ACGT 3 cut(s) 973, 1100, 1136
Hsp92I GRCGYC 3 cut(s) 341, 3027, 3684
HspAI GCGC 9 cut(s) 105, 131, 1870, 3027, 3156, 3475, 3534, 3671, 3684
KasI GGCGCC 2 cut(s) 3026, 3683
Ksp22I TGATCA 3 cut(s) 151, 391, 1105
KspAI GTTAAC 2 cut(s) 1450, 3109
MaeII ACGT 3 cut(s) 973, 1100, 1136
MaeIII GTNAC 3 cut(s) 969, 1275, 1910
MbiI CCGCTC 1 cut(s) 3469
MboII GAAGA 8 cut(s) 394, 958, 1777, 1853, 2168, 2306, 3257, 3362
MfeI CAATTG 2 cut(s) 999, 1404
MflI RGATCY 6 cut(s) 789, 803, 2225, 3128, 3247, 3747
MhlI GDGCHC 9 cut(s) 309, 781, 1084, 1948, 2086, 2650, 2680, 2770, 3206
MlsI TGGCCA 2 cut(s) 2189, 3432
MluNI TGGCCA 2 cut(s) 2189, 3432
Mly113I GGCGCC 2 cut(s) 3027, 3684
MlyI GAGTC 5 cut(s) 749, 1283, 1427, 1469, 1817
MmeI TCCRAC 3 cut(s) 1347, 1795, 3654
Mox20I TGGCCA 2 cut(s) 2189, 3432
Mph1103I ATGCAT 2 cut(s) 665, 2196
MroXI GAANNNNTTC 3 cut(s) 144, 879, 1463
MscI TGGCCA 2 cut(s) 2189, 3432
MslI CAYNNNNRTG 1 cut(s) 2406
Msp20I TGGCCA 2 cut(s) 2189, 3432
MspA1I CMGCKG 2 cut(s) 1144, 2624
MspI CCGG 6 cut(s) 562, 1304, 2352, 3133, 3611, 3705
MspR9I CCNGG 7 cut(s) 1062, 1304, 2602, 2691, 3133, 3621, 3664
MunI CAATTG 2 cut(s) 999, 1404
MvaI CCWGG 5 cut(s) 1062, 2602, 2691, 3621, 3664
MvnI CGCG 3 cut(s) 1511, 2013, 3378
NarI GGCGCC 2 cut(s) 3027, 3684
NciI CCSGG 2 cut(s) 1304, 3133
NdeI CATATG 1 cut(s) 76
NheI GCTAGC 1 cut(s) 3167
NmeAIII GCCGAG 1 cut(s) 2840
NmuCI GTSAC 1 cut(s) 1275
NsiI ATGCAT 2 cut(s) 665, 2196
NspI RCATGY 2 cut(s) 181, 2198
NspV TTCGAA 1 cut(s) 1498
PaeI GCATGC 1 cut(s) 2198
PaqCI CACCTGC 1 cut(s) 2167
PceI AGGCCT 2 cut(s) 1484, 3667
PciI ACATGT 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 2892
PdmI GAANNNNTTC 3 cut(s) 144, 879, 1463
PfeI GAWTC 4 cut(s) 995, 2873, 3212, 3365
PflMI CCANNNNNTGG 1 cut(s) 1127
PfoI TCCNGGA 1 cut(s) 3131
PinAI ACCGGT 1 cut(s) 3610
PleI GAGTC 5 cut(s) 748, 1282, 1426, 1469, 1816
PluTI GGCGCC 2 cut(s) 3030, 3687
PpsI GAGTC 5 cut(s) 748, 1282, 1426, 1469, 1816
Ppu21I YACGTR 1 cut(s) 974
PscI ACATGT 1 cut(s) 177
PshAI GACNNNNGTC 1 cut(s) 739
PshBI ATTAAT 4 cut(s) 192, 1359, 1802, 3339
PsiI TTATAA 2 cut(s) 249, 1581
Psp6I CCWGG 5 cut(s) 1060, 2600, 2689, 3619, 3662
PspFI CCCAGC 2 cut(s) 503, 888
PspGI CCWGG 5 cut(s) 1060, 2600, 2689, 3619, 3662
PspOMI GGGCCC 1 cut(s) 1944
PspPI GGNCC 5 cut(s) 734, 1944, 1945, 3330, 3439
PsrI GAACNNNNNNTAC 2 cut(s) 2046, 2078
PstNI CAGNNNCTG 4 cut(s) 1031, 1147, 1535, 3044
PsuI RGATCY 6 cut(s) 789, 803, 2225, 3128, 3247, 3747
PvuII CAGCTG 2 cut(s) 1144, 2624
RsaI GTAC 9 cut(s) 814, 1099, 1347, 1649, 1751, 3291, 3543, 3576, 3709
RsaNI GTAC 9 cut(s) 813, 1098, 1346, 1648, 1750, 3290, 3542, 3575, 3708
RseI CAYNNNNRTG 1 cut(s) 2406
Sau96I GGNCC 5 cut(s) 734, 1944, 1945, 3330, 3439
ScaI AGTACT 1 cut(s) 1649
SchI GAGTC 5 cut(s) 749, 1283, 1427, 1469, 1817
ScrFI CCNGG 7 cut(s) 1062, 1304, 2602, 2691, 3133, 3621, 3664
SduI GDGCHC 9 cut(s) 309, 781, 1084, 1948, 2086, 2650, 2680, 2770, 3206
SfcI CTRYAG 3 cut(s) 216, 1722, 2003
SfiI GGCCNNNNNGGCC 1 cut(s) 3438
SfoI GGCGCC 2 cut(s) 3028, 3685
SfuI TTCGAA 1 cut(s) 1498
SinI GGWCC 2 cut(s) 734, 3330
SmiMI CAYNNNNRTG 1 cut(s) 2406
SmlI CTYRAG 4 cut(s) 363, 854, 1658, 3098
SmoI CTYRAG 4 cut(s) 363, 854, 1658, 3098
SphI GCATGC 1 cut(s) 2198
SseBI AGGCCT 2 cut(s) 1484, 3667
SspDI GGCGCC 2 cut(s) 3026, 3683
SspI AATATT 1 cut(s) 2147
StuI AGGCCT 2 cut(s) 1484, 3667
StyD4I CCNGG 7 cut(s) 1060, 1302, 2600, 2689, 3131, 3619, 3662
StyI CCWWGG 3 cut(s) 1479, 2631, 3326
TaiI ACGT 3 cut(s) 976, 1103, 1139
TaqI TCGA 7 cut(s) 200, 1498, 1928, 2871, 3177, 3548, 3615
TaqII GACCGA 1 cut(s) 3347
TatI WGTACW 4 cut(s) 1345, 1647, 1749, 3289
TauI GCSGC 2 cut(s) 1511, 2362
TfiI GAWTC 4 cut(s) 995, 2873, 3212, 3365
TscAI CASTG 7 cut(s) 918, 972, 1419, 3206, 3211, 3237, 3762
TseFI GTSAC 1 cut(s) 1275
Tsp45I GTSAC 1 cut(s) 1275
TspDTI ATGAA 7 cut(s) 53, 564, 1319, 2169, 2390, 2443, 3339
TspGWI ACGGA 4 cut(s) 782, 2929, 3566, 3584
TspRI CASTG 7 cut(s) 918, 972, 1419, 3206, 3211, 3237, 3762
Van91I CCANNNNNTGG 1 cut(s) 1127
VneI GTGCAC 1 cut(s) 3202
VpaK11BI GGWCC 2 cut(s) 734, 3330
VspI ATTAAT 4 cut(s) 192, 1359, 1802, 3339
XagI CCTNNNNNAGG 1 cut(s) 3482
XapI RAATTY 9 cut(s) 269, 753, 875, 1326, 1574, 1826, 2099, 2559, 3063
XbaI TCTAGA 1 cut(s) 1252
XceI RCATGY 2 cut(s) 181, 2198
XcmI CCANNNNNNNNNTGG 2 cut(s) 2219, 2638
XmaJI CCTAGG 1 cut(s) 3326
XmiI GTMKAC 2 cut(s) 1558, 2278
XmnI GAANNNNTTC 3 cut(s) 144, 879, 1463
ZrmI AGTACT 1 cut(s) 1649
Zsp2I ATGCAT 2 cut(s) 665, 2196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.