Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003127

Physical Location & Seq

Genomic Coordinates Reverse (-)

45382344 .. 45391198

Gene Structure 8855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG337600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGATTAATCAGTTGGAGAAGGACAAAGATGTTGTTGCTCAGTCACAAGCAATTGCAATGCTTGAATCCTTACCTCAGCTTCCATTTTCTGTTGTTAATGCTCTACATAACTTTCTCATTGACTCCAAGATTGCAAACCGTCTTAATATTGTTGTTTATAGCATTGGGAGAAAGTCTTTGAAGGTCTTGCTCCAAGTGAATACGAATGGAGAAGAATCTAAGTTAACTGAATTTGAGCTACAACTTTCACAGATTATGACCACCTGCAATTCATCCACCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Peptidase_M1

Protein Analysis

94

Amino Acids

10.46

Weight (kDa)

5.7

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73960 AT1G73960
fragaria_vesca	FvH4_5g12730
malus_domestica	MD06G1210800.v1.1 MD06G1211000.v1.1 MD14G1221500.v1.1 MD14G1221600.v1.1
prunus_persica	Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1
pyrus_communis	pycom06g18830 pycom14g18330
rosa_chinensis	RchiOBHm_Chr7g0184581
rosa_laevigata	RLG00000003716 RLG00000004966 RLG00000020303
rosa_multiflora	Rmu_ssc0000289.1_g000035
rosa_roxburghii	Rroxscaffold_3G00269500 Rroxscaffold_7G00196400
rosa_rugosa	Rorug06G0007300 Rorug07G0060900
rosa_samantha	Rh2BG075800 Rh2CG077900 Rh5DG337600 Rh5DG495400 Rh6AG042200 Rh6AG254600 Rh7AG079100 Rh7BG068200 Rh7BG189600 Rh7CG069000 Rh7DG068300 Rh7DG191200 Rh7DG191900
rosa_wichuraiana	Rw7G005620 Rw7G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	65, 181
AluBI	AGCT	2 cut(s)	79, 238
AluI	AGCT	2 cut(s)	79, 238
ApoI	RAATTY	1 cut(s)	230
AseI	ATTAAT	1 cut(s)	6
BbvCI	CCTCAGC	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	272
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	53, 89
BspCNI	CTCAG	2 cut(s)	52, 88
BspMI	ACCTGC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	39, 75, 219
BstF5I	GGATG	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	272
BveI	ACCTGC	1 cut(s)	272
CviJI	RGCY	2 cut(s)	79, 238
CviKI_1	RGCY	2 cut(s)	79, 238
DdeI	CTNAG	3 cut(s)	39, 75, 219
FaiI	YATR	4 cut(s)	108, 159, 257, 283
FokI	GGATG	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	3 cut(s)	65, 122, 215
HpaI	GTTAAC	1 cut(s)	225
Hpy166II	GTNNAC	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	13, 175
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	3 cut(s)	56, 134, 267
HpyF3I	CTNAG	3 cut(s)	39, 75, 219
KspAI	GTTAAC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	224
MfeI	CAATTG	1 cut(s)	51
MluCI	AATT	3 cut(s)	51, 230, 268
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	1 cut(s)	84
MseI	TTAA	4 cut(s)	6, 96, 144, 224
MunI	CAATTG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	42
PaqCI	CACCTGC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	65, 215
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PshBI	ATTAAT	1 cut(s)	6
SaqAI	TTAA	4 cut(s)	6, 96, 144, 224
SchI	GAGTC	1 cut(s)	116
SetI	ASST	5 cut(s)	76, 81, 186, 240, 266
SgeI	CNNG	6 cut(s)	59, 74, 139, 199, 206, 276
Sse9I	AATT	3 cut(s)	51, 230, 268
SspI	AATATT	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	140
TasI	AATT	3 cut(s)	51, 230, 268
TfiI	GAWTC	2 cut(s)	65, 215
Tru1I	TTAA	4 cut(s)	6, 96, 144, 224
Tru9I	TTAA	4 cut(s)	6, 96, 144, 224
TseFI	GTSAC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	261
VspI	ATTAAT	1 cut(s)	6
XapI	RAATTY	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.