Rh2BG075800

Transcription initiation factor TFIID

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003127
Physical Location & Seq
Forward (+)
5755516 .. 5758329
2814 bp
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UTR
Exon/CDS
Intron
Rh2BG075800.1

Sequence Viewer

Length: 252 bp
ATGAGTTTCATCTTCGCAAACAAAAAACACCCGCAGATTAATCTGTTGGAGAAGGACAATGATGTTGCTGCTCAGGCACAAGCAATTGCAATGCTTGAGTCCTTACCTCAGCTTACATTTTGTGTAGTTAATGCTCTACATAACTTTCTTGTTGACTCCAAGAACGGGGCTGATGTGGTTTTTGATCCCAGATTGGTCAAGGTACTACCCGCAACACCTTCTGTGGATAATACTTTCTACACCTTCCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Peptidase_M1

Protein Analysis

83

Amino Acids

9.25

Weight (kDa)

6.01

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 32, 210, 247
AclWI GGATC 1 cut(s) 179
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 165
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AlwI GGATC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 68
AseI ATTAAT 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 55
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bpu10I CCTNAGC 2 cut(s) 72, 108
BpuEI CTTGAG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 86, 122
BseXI GCAGC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 165
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 3 cut(s) 32, 210, 247
BspCNI CTCAG 2 cut(s) 85, 121
BspPI GGATC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 96
BssMI GATC 1 cut(s) 184
BstDEI CTNAG 2 cut(s) 72, 108
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 203
CviJI RGCY 2 cut(s) 112, 170
CviKI_1 RGCY 2 cut(s) 112, 170
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 2 cut(s) 72, 108
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
FaiI YATR 1 cut(s) 141
FauI CCCGC 2 cut(s) 39, 217
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 98, 155
Hpy166II GTNNAC 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 46, 228
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 72, 108
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 2 cut(s) 59, 202
Lsp1109I GCAGC 1 cut(s) 55
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 1 cut(s) 4
MfeI CAATTG 1 cut(s) 84
MluCI AATT 1 cut(s) 84
MlyI GAGTC 2 cut(s) 107, 149
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 1 cut(s) 117
MseI TTAA 2 cut(s) 39, 129
MunI CAATTG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 2 cut(s) 106, 149
PpsI GAGTC 2 cut(s) 106, 149
PshBI ATTAAT 1 cut(s) 39
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SaqAI TTAA 2 cut(s) 39, 129
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 184
SchI GAGTC 2 cut(s) 107, 149
SetI ASST 5 cut(s) 109, 114, 204, 220, 245
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 84
SsiI CCGC 3 cut(s) 32, 210, 247
TasI AATT 1 cut(s) 84
Tru1I TTAA 2 cut(s) 39, 129
Tru9I TTAA 2 cut(s) 39, 129
TseI GCWGC 1 cut(s) 68
VspI ATTAAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.