Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003127

Physical Location & Seq

Genomic Coordinates Reverse (-)

39304774 .. 39306431

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCCGTCGGAATCGTCACGCTCGAAATGCGGAGCCACAACTCCACGAGTAGCGACGCCATGAGCGGAGCGACGCCGGAAGTGAACCGCCACCGCCGTCGATCGCAAAGCCGCCGCGGCCTCGTAACCCGATTCGCCGTCGCCGATGACGTCTTGAGTTTTTCCGATCCACGCCATGAGTTTCATCTTCGCAAACAGAAAACACCCGCAGACTGGGAATTTGAACTGTGGAATGCAATGCTTTTCATATGTGATTTGCTTGGATTGAGAGTTCACTTTTGTGTTGAGAATATTAATGTATTGGTCATTGATTATTTTATGGTGGTTGCCCTATCGATTAATCTGTTGGAGAAGGACAATGATGTTGCTGCTCGTGCACAAGCAATTGCAATGCTTGAGTCCTTACCTCGACTTACATTTTGTGTAGTTAATGCTCTACATAACTTTCTTGTTGACTCCAAGGCCTTCTCAAGAGTTCGAATTGAGGCAGCCTTTGGATTGGCTAATACATCATCCGAGATTGGTCAAGGTTTTGTTATGTCGTTTGATGACTCGATTTGTATATGTTGTTTTGTTTTCGGGAAGCGGATAAGGAGAAGCAGAAGAGGGAGTGTGAAAAAAATGGGAGATGCCATGAAATCTTTGGAGAACAGAACCTTGGATTCGAAAGGGAGATTGATATCCTTGTTGCTTTGGATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Peptidase_M1

Protein Analysis

234

Amino Acids

26.52

Weight (kDa)

9.35

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73960 AT1G73960
fragaria_vesca	FvH4_5g12730
malus_domestica	MD06G1210800.v1.1 MD06G1211000.v1.1 MD14G1221500.v1.1 MD14G1221600.v1.1
prunus_persica	Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1
pyrus_communis	pycom06g18830 pycom14g18330
rosa_chinensis	RchiOBHm_Chr7g0184581
rosa_laevigata	RLG00000003716 RLG00000004966 RLG00000020303
rosa_multiflora	Rmu_ssc0000289.1_g000035
rosa_roxburghii	Rroxscaffold_3G00269500 Rroxscaffold_7G00196400
rosa_rugosa	Rorug06G0007300 Rorug07G0060900
rosa_samantha	Rh2BG075800 Rh2CG077900 Rh5DG337600 Rh5DG495400 Rh6AG042200 Rh6AG254600 Rh7AG079100 Rh7BG068200 Rh7BG189600 Rh7CG069000 Rh7DG068300 Rh7DG191200 Rh7DG191900
rosa_wichuraiana	Rw7G005620 Rw7G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccBSI	CCGCTC	1 cut(s)	66
AccII	CGCG	1 cut(s)	117
AciI	CCGC	9 cut(s)	31, 66, 88, 94, 112, 115, 117, 207, 586
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	218
AcyI	GRCGYC	3 cut(s)	57, 74, 150
AfiI	CCNNNNNNNGG	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	224
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AleI	CACNNNNGTG	1 cut(s)	279
AloI	GAACNNNNNNTCC	2 cut(s)	255, 287
Alw21I	GWGCWC	1 cut(s)	379
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	118, 462
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	368, 488
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	4 cut(s)	203, 235, 402, 434
AseI	ATTAAT	2 cut(s)	294, 339
AsuII	TTCGAA	2 cut(s)	478, 665
BaeGI	GKGCMC	1 cut(s)	379
BauI	CACGAG	2 cut(s)	46, 372
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	355, 500
BceAI	ACGGC	2 cut(s)	81, 122
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	5 cut(s)	112, 115, 118, 369, 489
BlsI	GCNGC	5 cut(s)	113, 116, 119, 370, 490
BmiI	GGNNCC	1 cut(s)	35
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	619
BmuI	ACTGGG	1 cut(s)	223
Bpu14I	TTCGAA	2 cut(s)	478, 665
BpuEI	CTTGAG	3 cut(s)	175, 416, 454
Bsa29I	ATCGAT	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	679
BsaHI	GRCGYC	3 cut(s)	57, 74, 150
BsaJI	CCNNGG	3 cut(s)	115, 459, 657
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	2 cut(s)	243, 396
Bse8I	GATNNNNATC	1 cut(s)	679
BseCI	ATCGAT	1 cut(s)	335
BseDI	CCNNGG	3 cut(s)	115, 459, 657
BseGI	GGATG	2 cut(s)	512, 702
BseJI	GATNNNNATC	1 cut(s)	679
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMI	GCAATG	2 cut(s)	243, 396
BseNI	ACTGG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	355, 500
Bsh1236I	CGCG	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	120, 464
BshVI	ATCGAT	1 cut(s)	335
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	120, 464
Bsp119I	TTCGAA	2 cut(s)	478, 665
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	101, 166
BspACI	CCGC	9 cut(s)	31, 66, 88, 94, 112, 115, 117, 207, 586
BspANI	GGCC	2 cut(s)	120, 464
BspDI	ATCGAT	1 cut(s)	335
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	161
BspT104I	TTCGAA	2 cut(s)	478, 665
BsrBI	CCGCTC	1 cut(s)	66
BsrDI	GCAATG	2 cut(s)	243, 396
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	115, 459, 657
BssMI	GATC	2 cut(s)	101, 166
BssNI	GRCGYC	3 cut(s)	57, 74, 150
BssSI	CACGAG	2 cut(s)	46, 372
BssT1I	CCWWGG	2 cut(s)	459, 657
Bst2BI	CACGAG	2 cut(s)	46, 372
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	598
BstACI	GRCGYC	3 cut(s)	57, 74, 150
BstBI	TTCGAA	2 cut(s)	478, 665
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	512, 702
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	2 cut(s)	104, 169
BstMBI	GATC	2 cut(s)	101, 166
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 117, 374
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	355, 500
Bsu15I	ATCGAT	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	120, 464
BsuTUI	ATCGAT	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	512, 702
Cfr42I	CCGCGG	1 cut(s)	118
ClaI	ATCGAT	1 cut(s)	335
CseI	GACGC	2 cut(s)	65, 82
CviAII	CATG	3 cut(s)	61, 176, 634
CviJI	RGCY	6 cut(s)	36, 111, 120, 464, 491, 503
CviKI_1	RGCY	6 cut(s)	36, 111, 120, 464, 491, 503
DpnI	GATC	2 cut(s)	103, 168
DpnII	GATC	2 cut(s)	101, 166
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
Eco130I	CCWWGG	2 cut(s)	459, 657
Eco147I	AGGCCT	1 cut(s)	464
Eco32I	GATATC	1 cut(s)	681
EcoRV	GATATC	1 cut(s)	681
EcoT14I	CCWWGG	2 cut(s)	459, 657
ErhI	CCWWGG	2 cut(s)	459, 657
FaeI	CATG	3 cut(s)	64, 179, 637
FatI	CATG	3 cut(s)	60, 175, 633
FauI	CCCGC	1 cut(s)	214
FauNDI	CATATG	1 cut(s)	248
Fnu4HI	GCNGC	5 cut(s)	112, 115, 118, 369, 489
FokI	GGATG	1 cut(s)	499
Fsp4HI	GCNGC	5 cut(s)	112, 115, 118, 369, 489
GluI	GCNGC	5 cut(s)	112, 115, 118, 369, 489
HaeIII	GGCC	2 cut(s)	120, 464
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	2 cut(s)	65, 82
Hin1I	GRCGYC	3 cut(s)	57, 74, 150
Hin1II	CATG	3 cut(s)	64, 179, 637
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	6 cut(s)	12, 132, 398, 455, 551, 662
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	4 cut(s)	85, 274, 377, 454
Hpy188I	TCNGA	3 cut(s)	11, 166, 517
Hpy188III	TCNNGA	3 cut(s)	154, 471, 580
Hpy8I	GTNNAC	4 cut(s)	85, 274, 377, 454
Hpy99I	CGWCG	5 cut(s)	11, 59, 76, 102, 143
HpyAV	CCTTC	2 cut(s)	346, 475
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	236, 377, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 117, 374
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	3 cut(s)	57, 74, 150
Hsp92II	CATG	3 cut(s)	64, 179, 637
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	101, 166
LmnI	GCTCC	2 cut(s)	33, 68
LpnPI	CCDG	2 cut(s)	90, 199
Lsp1109I	GCAGC	2 cut(s)	355, 500
LweI	GCATC	1 cut(s)	619
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	16, 124
MalI	GATC	2 cut(s)	103, 168
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	2 cut(s)	101, 166
MboII	GAAGA	2 cut(s)	179, 615
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	3 cut(s)	218, 384, 480
MlyI	GAGTC	3 cut(s)	407, 449, 545
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	4 cut(s)	131, 417, 478, 599
MseI	TTAA	3 cut(s)	294, 339, 429
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	238
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	28, 117, 374
NdeI	CATATG	1 cut(s)	248
NdeII	GATC	2 cut(s)	101, 166
NlaIII	CATG	3 cut(s)	64, 179, 637
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	16
NspV	TTCGAA	2 cut(s)	478, 665
OliI	CACNNNNGTG	1 cut(s)	279
PceI	AGGCCT	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 141, 147
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	3 cut(s)	12, 132, 662
PkrI	GCNGC	5 cut(s)	113, 116, 119, 370, 490
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	3 cut(s)	406, 449, 545
PpsI	GAGTC	3 cut(s)	406, 449, 545
PshBI	ATTAAT	2 cut(s)	294, 339
PspN4I	GGNNCC	1 cut(s)	35
PvuI	CGATCG	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	279
SacII	CCGCGG	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	294, 339, 429
SatI	GCNGC	5 cut(s)	112, 115, 118, 369, 489
Sau3AI	GATC	2 cut(s)	101, 166
SchI	GAGTC	3 cut(s)	407, 449, 545
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	4 cut(s)	153, 409, 532, 659
SfaNI	GCATC	1 cut(s)	619
Sfr303I	CCGCGG	1 cut(s)	118
SfuI	TTCGAA	2 cut(s)	478, 665
SgrBI	CCGCGG	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	3 cut(s)	154, 395, 469
SmoI	CTYRAG	3 cut(s)	154, 395, 469
Sse9I	AATT	3 cut(s)	218, 384, 480
SseBI	AGGCCT	1 cut(s)	464
SsiI	CCGC	9 cut(s)	31, 66, 88, 94, 112, 115, 117, 207, 586
SspI	AATATT	1 cut(s)	292
StuI	AGGCCT	1 cut(s)	464
StyI	CCWWGG	2 cut(s)	459, 657
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	7 cut(s)	24, 100, 335, 409, 478, 554, 665
TasI	AATT	3 cut(s)	218, 384, 480
TauI	GCSGC	3 cut(s)	114, 117, 120
TfiI	GAWTC	3 cut(s)	12, 132, 662
Tru1I	TTAA	3 cut(s)	294, 339, 429
Tru9I	TTAA	3 cut(s)	294, 339, 429
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	2 cut(s)	368, 488
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	173, 235, 650
VneI	GTGCAC	1 cut(s)	375
VspI	ATTAAT	2 cut(s)	294, 339
XapI	RAATTY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	640
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.