Transcription initiation factor TFIID
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73960 AT1G73960 |
| fragaria_vesca | FvH4_5g12730 |
| malus_domestica | MD06G1210800.v1.1 MD06G1211000.v1.1 MD14G1221500.v1.1 MD14G1221600.v1.1 |
| prunus_persica | Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 |
| pyrus_communis | pycom06g18830 pycom14g18330 |
| rosa_chinensis | RchiOBHm_Chr7g0184581 |
| rosa_laevigata | RLG00000003716 RLG00000004966 RLG00000020303 |
| rosa_multiflora | Rmu_ssc0000289.1_g000035 |
| rosa_roxburghii | Rroxscaffold_3G00269500 Rroxscaffold_7G00196400 |
| rosa_rugosa | Rorug06G0007300 Rorug07G0060900 |
| rosa_samantha | Rh2BG075800 Rh2CG077900 Rh5DG337600 Rh5DG495400 Rh6AG042200 Rh6AG254600 Rh7AG079100 Rh7BG068200 Rh7BG189600 Rh7CG069000 Rh7DG068300 Rh7DG191200 Rh7DG191900 |
| rosa_wichuraiana | Rw7G005620 Rw7G016350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1160 |
| AarI | CACCTGC | 1 cut(s) | 400 |
| AatII | GACGTC | 1 cut(s) | 287 |
| Acc36I | ACCTGC | 1 cut(s) | 400 |
| AccB1I | GGYRCC | 3 cut(s) | 139, 349, 3155 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1760, 1780 |
| AccBSI | CCGCTC | 1 cut(s) | 3188 |
| AccI | GTMKAC | 2 cut(s) | 201, 2191 |
| AccII | CGCG | 5 cut(s) | 170, 308, 1426, 2655, 4056 |
| AccIII | TCCGGA | 3 cut(s) | 50, 781, 3463 |
| AclWI | GGATC | 6 cut(s) | 686, 2848, 3398, 3798, 3811, 4118 |
| AcoI | YGGCCR | 1 cut(s) | 309 |
| AcuI | CTGAAG | 4 cut(s) | 149, 468, 2767, 3971 |
| AcvI | CACGTG | 1 cut(s) | 3043 |
| AcyI | GRCGYC | 2 cut(s) | 33, 284 |
| AdeI | CACNNNGTG | 1 cut(s) | 1293 |
| AflII | CTTAAG | 1 cut(s) | 2498 |
| AflIII | ACRYGT | 3 cut(s) | 810, 1424, 3040 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 59 |
| AjnI | CCWGG | 6 cut(s) | 20, 672, 1693, 3196, 4221, 4331 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 455, 487, 2445, 2477, 3332, 3364 |
| Alw21I | GWGCWC | 6 cut(s) | 278, 296, 742, 1616, 2701, 3884 |
| Alw26I | GTCTC | 1 cut(s) | 500 |
| Alw44I | GTGCAC | 2 cut(s) | 1612, 3880 |
| AlwI | GGATC | 6 cut(s) | 686, 2848, 3398, 3798, 3811, 4118 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 679, 1664, 1780, 2168, 3716 |
| Ama87I | CYCGRG | 3 cut(s) | 1370, 4127, 4337 |
| Aor13HI | TCCGGA | 3 cut(s) | 50, 781, 3463 |
| ApaLI | GTGCAC | 2 cut(s) | 1612, 3880 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 696, 728 |
| AseI | ATTAAT | 3 cut(s) | 366, 1992, 2435 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 777, 1512 |
| AspLEI | GCGC | 1 cut(s) | 436 |
| AspS9I | GGNCC | 7 cut(s) | 53, 784, 1367, 2577, 2973, 3362, 4335 |
| AsuC2I | CCSGG | 1 cut(s) | 3808 |
| AsuHPI | GGTGA | 8 cut(s) | 279, 292, 2215, 2806, 2927, 3035, 3924, 4354 |
| AsuII | TTCGAA | 2 cut(s) | 2131, 4393 |
| AsuNHI | GCTAGC | 1 cut(s) | 3701 |
| AvaI | CYCGRG | 3 cut(s) | 1370, 4127, 4337 |
| AvaII | GGWCC | 5 cut(s) | 53, 784, 1367, 2577, 3362 |
| BaeGI | GKGCMC | 3 cut(s) | 1616, 3160, 3884 |
| BamHI | GGATCC | 1 cut(s) | 3803 |
| BanI | GGYRCC | 3 cut(s) | 139, 349, 3155 |
| BanII | GRGCYC | 4 cut(s) | 278, 296, 1414, 4290 |
| BauI | CACGAG | 1 cut(s) | 1039 |
| BbrPI | CACGTG | 1 cut(s) | 3043 |
| Bbv12I | GWGCWC | 6 cut(s) | 278, 296, 742, 1616, 2701, 3884 |
| BbvCI | CCTCAGC | 2 cut(s) | 1550, 2061 |
| BceAI | ACGGC | 2 cut(s) | 220, 1202 |
| BciT130I | CCWGG | 6 cut(s) | 22, 674, 1695, 3198, 4223, 4333 |
| BciVI | GTATCC | 2 cut(s) | 964, 2167 |
| BclI | TGATCA | 1 cut(s) | 1024 |
| BcnI | CCSGG | 1 cut(s) | 3808 |
| BcoDI | GTCTC | 1 cut(s) | 500 |
| BfaI | CTAG | 9 cut(s) | 722, 893, 1133, 1812, 1886, 2541, 3020, 3702, 3936 |
| BfmI | CTRYAG | 3 cut(s) | 715, 849, 2310 |
| BfrI | CTTAAG | 1 cut(s) | 2498 |
| BfuAI | ACCTGC | 1 cut(s) | 400 |
| BfuI | GTATCC | 2 cut(s) | 964, 2167 |
| BglII | AGATCT | 2 cut(s) | 1436, 3683 |
| BmcAI | AGTACT | 2 cut(s) | 227, 1447 |
| Bme1390I | CCNGG | 7 cut(s) | 22, 674, 1695, 3198, 3808, 4223, 4333 |
| Bme18I | GGWCC | 5 cut(s) | 53, 784, 1367, 2577, 3362 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 59 |
| BmeT110I | CYCGRG | 3 cut(s) | 1370, 4127, 4337 |
| BmgT120I | GGNCC | 7 cut(s) | 53, 784, 1367, 2577, 2973, 3362, 4335 |
| BmrFI | CCNGG | 7 cut(s) | 22, 674, 1695, 3198, 3808, 4223, 4333 |
| BmrI | ACTGGG | 1 cut(s) | 4284 |
| BmtI | GCTAGC | 1 cut(s) | 3705 |
| BmuI | ACTGGG | 1 cut(s) | 4284 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1372 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2857, 2889 |
| BpmI | CTGGAG | 8 cut(s) | 292, 638, 1782, 1882, 2143, 3174, 3216, 3252 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1550, 2025, 2061, 3758 |
| Bpu14I | TTCGAA | 2 cut(s) | 2131, 4393 |
| BpuEI | CTTGAG | 7 cut(s) | 356, 981, 982, 1398, 1508, 2312, 3672 |
| BpuMI | CCSGG | 1 cut(s) | 3808 |
| BsaAI | YACGTR | 3 cut(s) | 1607, 2941, 3043 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1706 |
| BsaHI | GRCGYC | 2 cut(s) | 33, 284 |
| BsaWI | WCCGGW | 4 cut(s) | 50, 781, 1744, 3463 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 1755, 1785 |
| Bse118I | RCCGGY | 1 cut(s) | 311 |
| Bse1I | ACTGG | 8 cut(s) | 275, 731, 1544, 1899, 3418, 3608, 4280, 4290 |
| Bse3DI | GCAATG | 4 cut(s) | 661, 2049, 3011, 3222 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1706 |
| BseAI | TCCGGA | 3 cut(s) | 50, 781, 3463 |
| BseBI | CCWGG | 6 cut(s) | 22, 674, 1695, 3198, 4223, 4333 |
| BseJI | GATNNNNATC | 1 cut(s) | 1706 |
| BseMI | GCAATG | 4 cut(s) | 661, 2049, 3011, 3222 |
| BseNI | ACTGG | 8 cut(s) | 275, 731, 1544, 1899, 3418, 3608, 4280, 4290 |
| BseSI | GKGCMC | 3 cut(s) | 1616, 3160, 3884 |
| BseX3I | CGGCCG | 1 cut(s) | 309 |
| BseYI | CCCAGC | 2 cut(s) | 1136, 1521 |
| BsgI | GTGCAG | 2 cut(s) | 3065, 3989 |
| Bsh1236I | CGCG | 5 cut(s) | 170, 308, 1426, 2655, 4056 |
| Bsh1285I | CGRYCG | 1 cut(s) | 312 |
| BshNI | GGYRCC | 3 cut(s) | 139, 349, 3155 |
| BsiEI | CGRYCG | 1 cut(s) | 312 |
| BsiHKAI | GWGCWC | 6 cut(s) | 278, 296, 742, 1616, 2701, 3884 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1370, 4127, 4337 |
| BsiSI | CCGG | 7 cut(s) | 51, 143, 312, 782, 1745, 3464, 3808 |
| BslFI | GGGAC | 3 cut(s) | 281, 1380, 2563 |
| BsmAI | GTCTC | 1 cut(s) | 500 |
| BsmFI | GGGAC | 3 cut(s) | 281, 1380, 2563 |
| BsoBI | CYCGRG | 3 cut(s) | 1370, 4127, 4337 |
| Bsp119I | TTCGAA | 2 cut(s) | 2131, 4393 |
| Bsp1286I | GDGCHC | 9 cut(s) | 278, 296, 742, 1414, 1616, 2701, 3160, 3884, 4290 |
| Bsp13I | TCCGGA | 3 cut(s) | 50, 781, 3463 |
| Bsp1407I | TGTACA | 2 cut(s) | 1978, 3907 |
| Bsp19I | CCATGG | 3 cut(s) | 3171, 3243, 3534 |
| Bsp68I | TCGCGA | 1 cut(s) | 2655 |
| BspEI | TCCGGA | 3 cut(s) | 50, 781, 3463 |
| BspFNI | CGCG | 5 cut(s) | 170, 308, 1426, 2655, 4056 |
| BspHI | TCATGA | 2 cut(s) | 1717, 3793 |
| BspMI | ACCTGC | 1 cut(s) | 400 |
| BspOI | GCTAGC | 1 cut(s) | 3705 |
| BspPI | GGATC | 6 cut(s) | 686, 2848, 3398, 3798, 3811, 4118 |
| BspQI | GCTCTTC | 1 cut(s) | 2766 |
| BspT104I | TTCGAA | 2 cut(s) | 2131, 4393 |
| BspT107I | GGYRCC | 3 cut(s) | 139, 349, 3155 |
| BspTI | CTTAAG | 1 cut(s) | 2498 |
| BsrBI | CCGCTC | 1 cut(s) | 3188 |
| BsrDI | GCAATG | 4 cut(s) | 661, 2049, 3011, 3222 |
| BsrFI | RCCGGY | 1 cut(s) | 311 |
| BsrGI | TGTACA | 2 cut(s) | 1978, 3907 |
| BsrI | ACTGG | 8 cut(s) | 275, 731, 1544, 1899, 3418, 3608, 4280, 4290 |
| BssAI | RCCGGY | 1 cut(s) | 311 |
| BssNI | GRCGYC | 2 cut(s) | 33, 284 |
| BssSI | CACGAG | 1 cut(s) | 1039 |
| BssT1I | CCWWGG | 9 cut(s) | 2112, 3171, 3243, 3309, 3441, 3474, 3504, 3534, 3564 |
| Bst2BI | CACGAG | 1 cut(s) | 1039 |
| Bst2UI | CCWGG | 6 cut(s) | 22, 674, 1695, 3198, 4223, 4333 |
| Bst6I | CTCTTC | 2 cut(s) | 2499, 2766 |
| BstACI | GRCGYC | 2 cut(s) | 33, 284 |
| BstAFI | CTTAAG | 1 cut(s) | 2498 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 1214, 1293, 1880, 3839, 3848 |
| BstAUI | TGTACA | 2 cut(s) | 1978, 3907 |
| BstBAI | YACGTR | 3 cut(s) | 1607, 2941, 3043 |
| BstBI | TTCGAA | 2 cut(s) | 2131, 4393 |
| BstDSI | CCRYGG | 4 cut(s) | 862, 3171, 3243, 3534 |
| BstFNI | CGCG | 5 cut(s) | 170, 308, 1426, 2655, 4056 |
| BstHHI | GCGC | 1 cut(s) | 436 |
| BstMAI | GTCTC | 1 cut(s) | 500 |
| BstMCI | CGRYCG | 1 cut(s) | 312 |
| BstNI | CCWGG | 6 cut(s) | 22, 674, 1695, 3198, 4223, 4333 |
| BstNSI | RCATGY | 4 cut(s) | 814, 2309, 2813, 3701 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1372 |
| BstSCI | CCNGG | 7 cut(s) | 20, 672, 1693, 3196, 3806, 4221, 4331 |
| BstSFI | CTRYAG | 3 cut(s) | 715, 849, 2310 |
| BstSLI | GKGCMC | 3 cut(s) | 1616, 3160, 3884 |
| BstUI | CGCG | 5 cut(s) | 170, 308, 1426, 2655, 4056 |
| BstX2I | RGATCY | 5 cut(s) | 1436, 2840, 3403, 3683, 3803 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 794 |
| BstYI | RGATCY | 5 cut(s) | 1436, 2840, 3403, 3683, 3803 |
| BstZI | CGGCCG | 1 cut(s) | 309 |
| BsuI | GTATCC | 2 cut(s) | 964, 2167 |
| BtgI | CCRYGG | 4 cut(s) | 862, 3171, 3243, 3534 |
| BtsI | GCAGTG | 4 cut(s) | 1260, 2719, 3882, 3884 |
| BtuMI | TCGCGA | 1 cut(s) | 2655 |
| BveI | ACCTGC | 1 cut(s) | 400 |
| CaiI | CAGNNNCTG | 5 cut(s) | 679, 1664, 1780, 2168, 3716 |
| CciI | TCATGA | 2 cut(s) | 1717, 3793 |
| CfoI | GCGC | 1 cut(s) | 436 |
| Cfr10I | RCCGGY | 1 cut(s) | 311 |
| Cfr13I | GGNCC | 7 cut(s) | 53, 784, 1367, 2577, 2973, 3362, 4335 |
| CseI | GACGC | 5 cut(s) | 41, 314, 1432, 1481, 1824 |
| CsiI | ACCWGGT | 1 cut(s) | 672 |
| DraIII | CACNNNGTG | 1 cut(s) | 1293 |
| DriI | GACNNNNNGTC | 1 cut(s) | 59 |
| EaeI | YGGCCR | 1 cut(s) | 309 |
| EagI | CGGCCG | 1 cut(s) | 309 |
| Eam1104I | CTCTTC | 2 cut(s) | 2499, 2766 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 59 |
| EarI | CTCTTC | 2 cut(s) | 2499, 2766 |
| EciI | GGCGGA | 1 cut(s) | 684 |
| Ecl136II | GAGCTC | 2 cut(s) | 276, 294 |
| EclXI | CGGCCG | 1 cut(s) | 309 |
| Eco130I | CCWWGG | 9 cut(s) | 2112, 3171, 3243, 3309, 3441, 3474, 3504, 3534, 3564 |
| Eco147I | AGGCCT | 1 cut(s) | 2117 |
| Eco24I | GRGCYC | 4 cut(s) | 278, 296, 1414, 4290 |
| Eco32I | GATATC | 4 cut(s) | 750, 2659, 3481, 3511 |
| Eco47I | GGWCC | 5 cut(s) | 53, 784, 1367, 2577, 3362 |
| Eco52I | CGGCCG | 1 cut(s) | 309 |
| Eco53kI | GAGCTC | 2 cut(s) | 276, 294 |
| Eco57I | CTGAAG | 4 cut(s) | 149, 468, 2767, 3971 |
| Eco72I | CACGTG | 1 cut(s) | 3043 |
| Eco88I | CYCGRG | 3 cut(s) | 1370, 4127, 4337 |
| EcoICRI | GAGCTC | 2 cut(s) | 276, 294 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1367, 2577, 2973, 3362 |
| EcoRI | GAATTC | 2 cut(s) | 1508, 2714 |
| EcoRII | CCWGG | 6 cut(s) | 20, 672, 1693, 3196, 4221, 4331 |
| EcoRV | GATATC | 4 cut(s) | 750, 2659, 3481, 3511 |
| EcoT14I | CCWWGG | 9 cut(s) | 2112, 3171, 3243, 3309, 3441, 3474, 3504, 3534, 3564 |
| EcoT38I | GRGCYC | 4 cut(s) | 278, 296, 1414, 4290 |
| ErhI | CCWWGG | 9 cut(s) | 2112, 3171, 3243, 3309, 3441, 3474, 3504, 3534, 3564 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3467, 3499, 3497, 3529 |
| FaqI | GGGAC | 3 cut(s) | 281, 1380, 2563 |
| FauI | CCCGC | 3 cut(s) | 1196, 4049, 4095 |
| FauNDI | CATATG | 2 cut(s) | 709, 2669 |
| FbaI | TGATCA | 1 cut(s) | 1024 |
| FblI | GTMKAC | 2 cut(s) | 201, 2191 |
| FriOI | GRGCYC | 4 cut(s) | 278, 296, 1414, 4290 |
| FspBI | CTAG | 9 cut(s) | 722, 893, 1133, 1812, 1886, 2541, 3020, 3702, 3936 |
| GlaI | GCGC | 1 cut(s) | 435 |
| GsaI | CCCAGC | 2 cut(s) | 1140, 1525 |
| GsuI | CTGGAG | 8 cut(s) | 292, 638, 1782, 1882, 2143, 3174, 3216, 3252 |
| HapII | CCGG | 7 cut(s) | 51, 143, 312, 782, 1745, 3464, 3808 |
| HgaI | GACGC | 5 cut(s) | 41, 314, 1432, 1481, 1824 |
| HhaI | GCGC | 1 cut(s) | 436 |
| Hin1I | GRCGYC | 2 cut(s) | 33, 284 |
| Hin6I | GCGC | 1 cut(s) | 434 |
| HinP1I | GCGC | 1 cut(s) | 434 |
| HincII | GTYRAC | 2 cut(s) | 202, 3784 |
| HindII | GTYRAC | 2 cut(s) | 202, 3784 |
| HindIII | AAGCTT | 4 cut(s) | 661, 836, 1844, 3303 |
| HpaI | GTTAAC | 1 cut(s) | 3784 |
| HpaII | CCGG | 7 cut(s) | 51, 143, 312, 782, 1745, 3464, 3808 |
| HphI | GGTGA | 8 cut(s) | 279, 292, 2215, 2806, 2927, 3035, 3924, 4354 |
| Hpy99I | CGWCG | 7 cut(s) | 32, 35, 62, 108, 203, 206, 217 |
| HpyCH4IV | ACGT | 6 cut(s) | 284, 1606, 1733, 2940, 3042, 4227 |
| HpySE526I | ACGT | 6 cut(s) | 284, 1606, 1733, 2940, 3042, 4227 |
| Hsp92I | GRCGYC | 2 cut(s) | 33, 284 |
| HspAI | GCGC | 1 cut(s) | 434 |
| KflI | GGGWCCC | 1 cut(s) | 1367 |
| Kpn2I | TCCGGA | 3 cut(s) | 50, 781, 3463 |
| Ksp22I | TGATCA | 1 cut(s) | 1024 |
| KspAI | GTTAAC | 1 cut(s) | 3784 |
| LguI | GCTCTTC | 1 cut(s) | 2766 |
| MabI | ACCWGGT | 1 cut(s) | 672 |
| MaeI | CTAG | 9 cut(s) | 722, 893, 1133, 1812, 1886, 2541, 3020, 3702, 3936 |
| MaeII | ACGT | 6 cut(s) | 284, 1606, 1733, 2940, 3042, 4227 |
| MbiI | CCGCTC | 1 cut(s) | 3188 |
| MfeI | CAATTG | 1 cut(s) | 2037 |
| MflI | RGATCY | 5 cut(s) | 1436, 2840, 3403, 3683, 3803 |
| MhlI | GDGCHC | 9 cut(s) | 278, 296, 742, 1414, 1616, 2701, 3160, 3884, 4290 |
| MluI | ACGCGT | 1 cut(s) | 1424 |
| MlyI | GAGTC | 4 cut(s) | 1382, 2102, 2238, 2866 |
| MmeI | TCCRAC | 5 cut(s) | 1332, 1605, 1980, 2428, 3609 |
| MroI | TCCGGA | 3 cut(s) | 50, 781, 3463 |
| MroXI | GAANNNNTTC | 2 cut(s) | 777, 1512 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1619, 3111, 3117, 3798, 4119 |
| MspA1I | CMGCKG | 2 cut(s) | 1777, 2568 |
| MspCI | CTTAAG | 1 cut(s) | 2498 |
| MspI | CCGG | 7 cut(s) | 51, 143, 312, 782, 1745, 3464, 3808 |
| MspR9I | CCNGG | 7 cut(s) | 22, 674, 1695, 3198, 3808, 4223, 4333 |
| MunI | CAATTG | 1 cut(s) | 2037 |
| MvaI | CCWGG | 6 cut(s) | 22, 674, 1695, 3198, 4223, 4333 |
| MvnI | CGCG | 5 cut(s) | 170, 308, 1426, 2655, 4056 |
| NciI | CCSGG | 1 cut(s) | 3808 |
| NcoI | CCATGG | 3 cut(s) | 3171, 3243, 3534 |
| NdeI | CATATG | 2 cut(s) | 709, 2669 |
| NheI | GCTAGC | 1 cut(s) | 3701 |
| NmuCI | GTSAC | 7 cut(s) | 280, 285, 1673, 2203, 2933, 3590, 4199 |
| NruI | TCGCGA | 1 cut(s) | 2655 |
| NspI | RCATGY | 4 cut(s) | 814, 2309, 2813, 3701 |
| NspV | TTCGAA | 2 cut(s) | 2131, 4393 |
| PaeI | GCATGC | 2 cut(s) | 2813, 3701 |
| PagI | TCATGA | 2 cut(s) | 1717, 3793 |
| PaqCI | CACCTGC | 1 cut(s) | 400 |
| PceI | AGGCCT | 1 cut(s) | 2117 |
| PciI | ACATGT | 1 cut(s) | 810 |
| PciSI | GCTCTTC | 1 cut(s) | 2766 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 39 |
| PdmI | GAANNNNTTC | 2 cut(s) | 777, 1512 |
| PfeI | GAWTC | 8 cut(s) | 251, 637, 1628, 1661, 1907, 2051, 3890, 4372 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1760, 1780 |
| PfoI | TCCNGGA | 1 cut(s) | 3806 |
| PleI | GAGTC | 4 cut(s) | 1381, 2102, 2238, 2866 |
| PmaCI | CACGTG | 1 cut(s) | 3043 |
| PmlI | CACGTG | 1 cut(s) | 3043 |
| PpsI | GAGTC | 4 cut(s) | 1381, 2102, 2238, 2866 |
| Ppu21I | YACGTR | 3 cut(s) | 1607, 2941, 3043 |
| PpuMI | RGGWCCY | 3 cut(s) | 1367, 2577, 3362 |
| PscI | ACATGT | 1 cut(s) | 810 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1372 |
| PshBI | ATTAAT | 3 cut(s) | 366, 1992, 2435 |
| PsiI | TTATAA | 1 cut(s) | 1160 |
| Psp124BI | GAGCTC | 2 cut(s) | 278, 296 |
| Psp5II | RGGWCCY | 3 cut(s) | 1367, 2577, 3362 |
| Psp6I | CCWGG | 6 cut(s) | 20, 672, 1693, 3196, 4221, 4331 |
| PspCI | CACGTG | 1 cut(s) | 3043 |
| PspFI | CCCAGC | 2 cut(s) | 1136, 1521 |
| PspGI | CCWGG | 6 cut(s) | 20, 672, 1693, 3196, 4221, 4331 |
| PspPI | GGNCC | 7 cut(s) | 53, 784, 1367, 2577, 2973, 3362, 4335 |
| PspPPI | RGGWCCY | 3 cut(s) | 1367, 2577, 3362 |
| PstNI | CAGNNNCTG | 5 cut(s) | 679, 1664, 1780, 2168, 3716 |
| PsuI | RGATCY | 5 cut(s) | 1436, 2840, 3403, 3683, 3803 |
| PvuII | CAGCTG | 2 cut(s) | 1777, 2568 |
| RruI | TCGCGA | 1 cut(s) | 2655 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1619, 3111, 3117, 3798, 4119 |
| SacI | GAGCTC | 2 cut(s) | 278, 296 |
| SalI | GTCGAC | 1 cut(s) | 200 |
| SapI | GCTCTTC | 1 cut(s) | 2766 |
| Sau96I | GGNCC | 7 cut(s) | 53, 784, 1367, 2577, 2973, 3362, 4335 |
| ScaI | AGTACT | 2 cut(s) | 227, 1447 |
| SchI | GAGTC | 4 cut(s) | 1382, 2102, 2238, 2866 |
| ScrFI | CCNGG | 7 cut(s) | 22, 674, 1695, 3198, 3808, 4223, 4333 |
| SduI | GDGCHC | 9 cut(s) | 278, 296, 742, 1414, 1616, 2701, 3160, 3884, 4290 |
| SexAI | ACCWGGT | 1 cut(s) | 672 |
| SfcI | CTRYAG | 3 cut(s) | 715, 849, 2310 |
| SfuI | TTCGAA | 2 cut(s) | 2131, 4393 |
| SgrDI | CGTCGACG | 1 cut(s) | 200 |
| SinI | GGWCC | 5 cut(s) | 53, 784, 1367, 2577, 3362 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1619, 3111, 3117, 3798, 4119 |
| SmlI | CTYRAG | 8 cut(s) | 335, 961, 996, 1413, 1487, 2291, 2498, 3687 |
| SmoI | CTYRAG | 8 cut(s) | 335, 961, 996, 1413, 1487, 2291, 2498, 3687 |
| SphI | GCATGC | 2 cut(s) | 2813, 3701 |
| SseBI | AGGCCT | 1 cut(s) | 2117 |
| SspMI | CTAG | 9 cut(s) | 722, 893, 1133, 1812, 1886, 2541, 3020, 3702, 3936 |
| SstI | GAGCTC | 2 cut(s) | 278, 296 |
| StuI | AGGCCT | 1 cut(s) | 2117 |
| StyD4I | CCNGG | 7 cut(s) | 20, 672, 1693, 3196, 3806, 4221, 4331 |
| StyI | CCWWGG | 9 cut(s) | 2112, 3171, 3243, 3309, 3441, 3474, 3504, 3534, 3564 |
| TaiI | ACGT | 6 cut(s) | 287, 1609, 1736, 2943, 3045, 4230 |
| TatI | WGTACW | 7 cut(s) | 225, 400, 1445, 1978, 2382, 3907, 4243 |
| TauI | GCSGC | 4 cut(s) | 311, 434, 559, 2144 |
| TfiI | GAWTC | 8 cut(s) | 251, 637, 1628, 1661, 1907, 2051, 3890, 4372 |
| TseFI | GTSAC | 7 cut(s) | 280, 285, 1673, 2203, 2933, 3590, 4199 |
| Tsp45I | GTSAC | 7 cut(s) | 280, 285, 1673, 2203, 2933, 3590, 4199 |
| TspGWI | ACGGA | 6 cut(s) | 187, 230, 649, 1370, 1902, 3613 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1760, 1780 |
| Vha464I | CTTAAG | 1 cut(s) | 2498 |
| VneI | GTGCAC | 2 cut(s) | 1612, 3880 |
| VpaK11BI | GGWCC | 5 cut(s) | 53, 784, 1367, 2577, 3362 |
| VspI | ATTAAT | 3 cut(s) | 366, 1992, 2435 |
| XceI | RCATGY | 4 cut(s) | 814, 2309, 2813, 3701 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 3113, 3148, 3418, 3448, 3541 |
| XmiI | GTMKAC | 2 cut(s) | 201, 2191 |
| XmnI | GAANNNNTTC | 2 cut(s) | 777, 1512 |
| XspI | CTAG | 9 cut(s) | 722, 893, 1133, 1812, 1886, 2541, 3020, 3702, 3936 |
| ZraI | GACGTC | 1 cut(s) | 285 |
| ZrmI | AGTACT | 2 cut(s) | 227, 1447 |