Rh6AG254600

Transcription initiation factor TFIID

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003127
Physical Location & Seq
Forward (+)
44457853 .. 44471992
14140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG254600.1

Sequence Viewer

Length: 189 bp
ATGAGTTTCATCTTCGCAAACAGAAAACACCCGCAGATTAATCTGTTGGAGAAGGACAATGATGTTGCTGCTCAGGCACAAGCAATTGCAATGCTTGAGTCCTTACCTCAGCTTACATTTTGTGTAGTTAATGCTCTACATAACTTTCTTGTTGACTCCAAGTCAGGTGCATCTGTACCTGCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Peptidase_M1

Protein Analysis

62

Amino Acids

6.74

Weight (kDa)

5.98

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AfaI GTAC 1 cut(s) 177
AhdI GACNNNNNGTC 1 cut(s) 160
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 68
AseI ATTAAT 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 55
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmeRI GACNNNNNGTC 1 cut(s) 160
BmsI GCATC 1 cut(s) 179
Bpu10I CCTNAGC 2 cut(s) 72, 108
BpuEI CTTGAG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 86, 122
BseXI GCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 165
BspACI CCGC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 85, 121
BsrDI GCAATG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 72, 108
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 182
Csp6I GTAC 1 cut(s) 176
CviJI RGCY 1 cut(s) 112
CviKI_1 RGCY 1 cut(s) 112
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 2 cut(s) 72, 108
DriI GACNNNNNGTC 1 cut(s) 160
Eam1105I GACNNNNNGTC 1 cut(s) 160
FaiI YATR 1 cut(s) 141
FauI CCCGC 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspEI CC 9 cut(s) 32, 38, 44, 45, 59, 115, 120, 150, 172
GluI GCNGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 98, 155
Hpy166II GTNNAC 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 89, 170, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 72, 108
LpnPI CCDG 2 cut(s) 59, 150
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 179
MboII GAAGA 1 cut(s) 4
MfeI CAATTG 1 cut(s) 84
MluCI AATT 1 cut(s) 84
MlyI GAGTC 2 cut(s) 107, 149
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 1 cut(s) 117
MseI TTAA 2 cut(s) 39, 129
MunI CAATTG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 2 cut(s) 106, 149
PpsI GAGTC 2 cut(s) 106, 149
PshBI ATTAAT 1 cut(s) 39
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 39, 129
SatI GCNGC 1 cut(s) 69
SchI GAGTC 2 cut(s) 107, 149
SetI ASST 4 cut(s) 109, 114, 169, 181
SfaNI GCATC 1 cut(s) 179
SgeI CNNG 7 cut(s) 43, 86, 92, 107, 161, 172, 177
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 84
SsiI CCGC 1 cut(s) 32
TaaI ACNGT 1 cut(s) 186
TasI AATT 1 cut(s) 84
Tru1I TTAA 2 cut(s) 39, 129
Tru9I TTAA 2 cut(s) 39, 129
TscAI CASTG 1 cut(s) 189
TseI GCWGC 1 cut(s) 68
TspRI CASTG 1 cut(s) 189
VspI ATTAAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.