Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003127

Physical Location & Seq

Genomic Coordinates Forward (+)

20011071 .. 20013295

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g18330.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCTTCTGTTGGCCATTCCTCATGCTATTGCTATGGTCAGAGCTGCAGACAAGAAAAGTCCAAGGGAGGCTGTGGAGTTTGTTTTACAACTTTTGAAGTACAATGACAACAATGGGAACCCTTACTCTGATGTCTTCTGGCTTGCTGCATTAATCAAGTCTGTTGGAGAACTTGAAATCGGGCAACAGAGTATTCTCCTGTTATCGTCTCTTCTGAAGCGCATTGATCACCTCTTGCAATTTGACAGGTTGATGCCTAGCTACAATGGTATCTTGTCAGTCGGCTGTATTAGGGCCCTGACTCAGGTTGCCCTAAAACTGTTGGGATTTGTTCCTCTGGATCGCGTGTTTGAACTTGTAAAACCCTTTTGGGATATCAAAGCTGAATGGCAAGTTCGGGCTGAAGCAAGCAGAGCACTCCTTGATTTTGAATTCCATTGCAAAGGCATTGATGCAGCTTTGCAACTGTTTATCAAATATTTAGATGAAGAGATGTCCTTCAGAGGGCAGGTGAAGCTGGCCGTGCATGCTATGAGGTTATGCCAGATTAGAGGTGGATCTGATCTTGCCGACAACATCAGGAGCGAAACTCTTGTGGCTTTGCTTCGTCTACTTGAAGGTGAAGCGGAAAGCTTCCGAGAGCAGAAAAACATCTTTGCTGCTTTCATCCCAGAAAGTAAATATGTGGAACCACCTTCCGAAGCTCCAAACCTTTCACATGGTGATTTAACTGTTCCTGAAACTTCCAGCAGCTTCCAAGAACGATTTGGGTGCTCCAGAACCTACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Peptidase_M1

Protein Analysis

264

Amino Acids

29.66

Weight (kDa)

5.81

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73960 AT1G73960
fragaria_vesca	FvH4_5g12730
malus_domestica	MD06G1210800.v1.1 MD06G1211000.v1.1 MD14G1221500.v1.1 MD14G1221600.v1.1
prunus_persica	Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1
pyrus_communis	pycom06g18830 pycom14g18330
rosa_chinensis	RchiOBHm_Chr7g0184581
rosa_laevigata	RLG00000003716 RLG00000004966 RLG00000020303
rosa_multiflora	Rmu_ssc0000289.1_g000035
rosa_roxburghii	Rroxscaffold_3G00269500 Rroxscaffold_7G00196400
rosa_rugosa	Rorug06G0007300 Rorug07G0060900
rosa_samantha	Rh2BG075800 Rh2CG077900 Rh5DG337600 Rh5DG495400 Rh6AG042200 Rh6AG254600 Rh7AG079100 Rh7BG068200 Rh7BG189600 Rh7CG069000 Rh7DG068300 Rh7DG191200 Rh7DG191900
rosa_wichuraiana	Rw7G005620 Rw7G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
Acc36I	ACCTGC	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	610
AccII	CGCG	1 cut(s)	345
AciI	CCGC	1 cut(s)	626
AclWI	GGATC	2 cut(s)	348, 565
AcoI	YGGCCR	2 cut(s)	12, 519
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	3 cut(s)	236, 423, 484
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	304, 504
AgsI	TTSAA	5 cut(s)	97, 176, 353, 431, 617
AluBI	AGCT	8 cut(s)	44, 261, 383, 458, 517, 633, 704, 753
AluI	AGCT	8 cut(s)	44, 261, 383, 458, 517, 633, 704, 753
Alw21I	GWGCWC	2 cut(s)	418, 776
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	2 cut(s)	348, 565
AoxI	GGCC	3 cut(s)	12, 294, 519
ApaI	GGGCCC	1 cut(s)	298
ApeKI	GCWGC	5 cut(s)	44, 146, 455, 659, 750
ApoI	RAATTY	1 cut(s)	431
AseI	ATTAAT	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	294, 295
AsuHPI	GGTGA	4 cut(s)	221, 523, 632, 734
BaeGI	GKGCMC	1 cut(s)	298
BaeI	ACNNNNGTAYC	2 cut(s)	253, 286
BalI	TGGCCA	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	418, 776
BbvI	GCAGC	5 cut(s)	31, 133, 467, 646, 762
BceAI	ACGGC	1 cut(s)	506
BcgI	CGANNNNNNTGC	2 cut(s)	753, 787
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	499
BisI	GCNGC	5 cut(s)	45, 147, 456, 660, 751
BlsI	GCNGC	5 cut(s)	46, 148, 457, 661, 752
BmgT120I	GGNCC	2 cut(s)	294, 295
BmiI	GGNNCC	3 cut(s)	119, 296, 690
BmsI	GCATC	2 cut(s)	243, 442
BpiI	GAAGAC	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	574, 606
BpmI	CTGGAG	1 cut(s)	760
BsaJI	CCNNGG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 504
Bse3DI	GCAATG	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	666
BseLI	CCNNNNNNNGG	2 cut(s)	304, 504
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	317
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	5 cut(s)	31, 133, 467, 646, 762
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	3 cut(s)	14, 296, 521
BsiHKAI	GWGCWC	2 cut(s)	418, 776
BslI	CCNNNNNNNGG	2 cut(s)	304, 504
BsmAI	GTCTC	1 cut(s)	213
BsmBI	CGTCTC	1 cut(s)	213
BsnI	GGCC	3 cut(s)	14, 296, 521
Bsp120I	GGGCCC	1 cut(s)	294
Bsp1286I	GDGCHC	3 cut(s)	298, 418, 776
Bsp143I	GATC	4 cut(s)	226, 340, 557, 562
BspACI	CCGC	1 cut(s)	626
BspANI	GGCC	3 cut(s)	14, 296, 521
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	119, 296, 690
BspMAI	CTGCAG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	2 cut(s)	348, 565
BsrDI	GCAATG	1 cut(s)	436
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	4 cut(s)	226, 340, 557, 562
BssT1I	CCWWGG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	321, 468, 733
Bst6I	CTCTTC	2 cut(s)	216, 483
BstC8I	GCNNGC	4 cut(s)	144, 409, 519, 528
BstDEI	CTNAG	1 cut(s)	303
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	666
BstFNI	CGCG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	4 cut(s)	229, 343, 560, 565
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	4 cut(s)	226, 340, 557, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 514, 523, 527
BstNSI	RCATGY	1 cut(s)	530
BstSFI	CTRYAG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	5 cut(s)	31, 133, 467, 646, 762
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BsuRI	GGCC	3 cut(s)	14, 296, 521
BtsCI	GGATG	1 cut(s)	666
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	4 cut(s)	144, 409, 519, 528
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	294, 295
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	3 cut(s)	23, 527, 719
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	4 cut(s)	228, 342, 559, 564
DpnII	GATC	4 cut(s)	226, 340, 557, 562
DraIII	CACNNNGTG	1 cut(s)	722
EaeI	YGGCCR	2 cut(s)	12, 519
Eam1104I	CTCTTC	2 cut(s)	216, 483
EarI	CTCTTC	2 cut(s)	216, 483
Eco130I	CCWWGG	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	298
Eco32I	GATATC	1 cut(s)	376
Eco57I	CTGAAG	3 cut(s)	236, 423, 484
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoO109I	RGGNCCY	2 cut(s)	294, 295
EcoRI	GAATTC	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	62
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	3 cut(s)	26, 530, 722
FaiI	YATR	7 cut(s)	24, 35, 528, 533, 541, 684, 720
FatI	CATG	3 cut(s)	22, 526, 718
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	610
Fnu4HI	GCNGC	5 cut(s)	45, 147, 456, 660, 751
FokI	GGATG	1 cut(s)	653
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	5 cut(s)	45, 147, 456, 660, 751
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	5 cut(s)	45, 147, 456, 660, 751
GsuI	CTGGAG	1 cut(s)	760
HaeIII	GGCC	3 cut(s)	14, 296, 521
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	26, 530, 722
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	631
HinfI	GANTC	1 cut(s)	301
HphI	GGTGA	4 cut(s)	221, 523, 632, 734
Hpy166II	GTNNAC	1 cut(s)	611
Hpy188I	TCNGA	7 cut(s)	41, 130, 216, 503, 562, 638, 700
Hpy188III	TCNNGA	4 cut(s)	338, 580, 737, 777
Hpy8I	GTNNAC	1 cut(s)	611
HpyAV	CCTTC	3 cut(s)	508, 611, 705
HpyCH4III	ACNGT	3 cut(s)	321, 468, 733
HpyCH4V	TGCA	7 cut(s)	47, 149, 238, 441, 455, 463, 526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 514, 523, 527
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	26, 530, 722
HspAI	GCGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	226, 340, 557, 562
LmnI	GCTCC	3 cut(s)	582, 709, 779
Lsp1109I	GCAGC	5 cut(s)	31, 133, 467, 646, 762
LweI	GCATC	2 cut(s)	243, 442
MaeI	CTAG	1 cut(s)	258
MalI	GATC	4 cut(s)	228, 342, 559, 564
MboI	GATC	4 cut(s)	226, 340, 557, 562
MboII	GAAGA	3 cut(s)	127, 203, 500
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	3 cut(s)	298, 418, 776
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	2 cut(s)	239, 431
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	7 cut(s)	30, 61, 242, 345, 497, 528, 545
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	2 cut(s)	152, 728
Msp20I	TGGCCA	1 cut(s)	14
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	4 cut(s)	413, 514, 523, 527
NdeII	GATC	4 cut(s)	226, 340, 557, 562
NlaIII	CATG	3 cut(s)	26, 530, 722
NlaIV	GGNNCC	3 cut(s)	119, 296, 690
NspI	RCATGY	1 cut(s)	530
PaeI	GCATGC	1 cut(s)	530
PaqCI	CACCTGC	1 cut(s)	499
PkrI	GCNGC	5 cut(s)	46, 148, 457, 661, 752
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PshBI	ATTAAT	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	119, 296, 690
PspOMI	GGGCCC	1 cut(s)	294
PspPI	GGNCC	2 cut(s)	294, 295
PstI	CTGCAG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	557
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	152, 728
SatI	GCNGC	5 cut(s)	45, 147, 456, 660, 751
Sau3AI	GATC	4 cut(s)	226, 340, 557, 562
Sau96I	GGNCC	2 cut(s)	294, 295
SchI	GAGTC	1 cut(s)	295
SduI	GDGCHC	3 cut(s)	298, 418, 776
SfaNI	GCATC	2 cut(s)	243, 442
SfcI	CTRYAG	1 cut(s)	45
SphI	GCATGC	1 cut(s)	530
Sse9I	AATT	2 cut(s)	239, 431
SsiI	CCGC	1 cut(s)	626
SspI	AATATT	1 cut(s)	479
SspMI	CTAG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	3 cut(s)	321, 468, 733
TasI	AATT	2 cut(s)	239, 431
TatI	WGTACW	1 cut(s)	99
Tru1I	TTAA	2 cut(s)	152, 728
Tru9I	TTAA	2 cut(s)	152, 728
TseI	GCWGC	5 cut(s)	44, 146, 455, 659, 750
TspDTI	ATGAA	2 cut(s)	501, 655
VspI	ATTAAT	1 cut(s)	152
XagI	CCTNNNNNAGG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	431
XceI	RCATGY	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	2 cut(s)	551, 764
XmiI	GTMKAC	1 cut(s)	610
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.