Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003127

Physical Location & Seq

Genomic Coordinates Forward (+)

17757090 .. 17763154

Gene Structure 6065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG191200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCTACAAAATGTGAGGGTCCAACGATTGGCATCGACCTCGGAACAACTTACTCGTGTGTGGGAGTTTGGCAACACGGTCGTGTTGAGATTATAGCTAATGATCAGGGCAATAGAACAACACCGTCTTACGTTGCTTTTACGAACAGTGGGCGTTTAATTGGTGACGCAGCCAAGAATCAAGTATCCAAGAACCCCACCAACACTGTATTTGACTGTGATGGGAATCTGAAGGGTAAGGCAATGCTTGAAATGCAGGCTACTGAAGGAGAACCATCACTGCCCTGGGATATTAATCAGTTGGAGAAGGACAAAGATGTTGTTGCTCAGGCACAAGCAATTGCAATGCTTGAGTCCTTACCTCAGCTTCCATTTTGTGTTGTTAATGCTCTGCATAACTTTCTTACTGACTCCAAGGCCTTCTCAAGAGTTCGAATTGAGGCAGCCTTTGGATTGGCTAATACATCATCTGAGGTACCACAATTCGGTTATTGGAGCTTTGCAGAGCGTCAATGCTGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

174

Amino Acids

18.94

Weight (kDa)

4.99

Isoelectric Point (pI)

23.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	10 - 110	2.9e-30	Hsp70 protein
TPR_TAF2_C	PF25577	99 - 158	6.4e-07	TAF2-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73960 AT1G73960
fragaria_vesca	FvH4_5g12730
malus_domestica	MD06G1210800.v1.1 MD06G1211000.v1.1 MD14G1221500.v1.1 MD14G1221600.v1.1
prunus_persica	Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1
pyrus_communis	pycom06g18830 pycom14g18330
rosa_chinensis	RchiOBHm_Chr7g0184581
rosa_laevigata	RLG00000003716 RLG00000004966 RLG00000020303
rosa_multiflora	Rmu_ssc0000289.1_g000035
rosa_roxburghii	Rroxscaffold_3G00269500 Rroxscaffold_7G00196400
rosa_rugosa	Rorug06G0007300 Rorug07G0060900
rosa_samantha	Rh2BG075800 Rh2CG077900 Rh5DG337600 Rh5DG495400 Rh6AG042200 Rh6AG254600 Rh7AG079100 Rh7BG068200 Rh7BG189600 Rh7CG069000 Rh7DG068300 Rh7DG191200 Rh7DG191900
rosa_wichuraiana	Rw7G005620 Rw7G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	475
AccB7I	CCANNNNNTGG	1 cut(s)	29
AcuI	CTGAAG	2 cut(s)	251, 285
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	2 cut(s)	29, 485
AgsI	TTSAA	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	284
AleI	CACNNNNGTG	1 cut(s)	81
AluBI	AGCT	3 cut(s)	98, 367, 498
AluI	AGCT	3 cut(s)	98, 367, 498
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	2 cut(s)	170, 443
AseI	ATTAAT	1 cut(s)	294
Asp718I	GGTACC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	176
AsuII	TTCGAA	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	475
BauI	CACGAG	1 cut(s)	55
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	182, 455
BccI	CCATC	2 cut(s)	215, 283
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 62, 96
BciT130I	CCWGG	1 cut(s)	286
BciVI	GTATCC	1 cut(s)	196
BclI	TGATCA	1 cut(s)	103
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	2 cut(s)	171, 444
BlsI	GCNGC	2 cut(s)	172, 445
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	21, 477
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	42
Bpu10I	CCTNAGC	2 cut(s)	327, 363
Bpu14I	TTCGAA	1 cut(s)	433
BpuEI	CTTGAG	2 cut(s)	371, 409
BsaBI	GATNNNNATC	3 cut(s)	32, 225, 294
BsaJI	CCNNGG	4 cut(s)	40, 284, 285, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 485
Bse3DI	GCAATG	2 cut(s)	249, 351
Bse8I	GATNNNNATC	3 cut(s)	32, 225, 294
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	4 cut(s)	40, 284, 285, 414
BseJI	GATNNNNATC	3 cut(s)	32, 225, 294
BseLI	CCNNNNNNNGG	2 cut(s)	29, 485
BseMI	GCAATG	2 cut(s)	249, 351
BseMII	CTCAG	3 cut(s)	341, 377, 462
BseXI	GCAGC	2 cut(s)	182, 455
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	419
BshNI	GGYRCC	1 cut(s)	475
BsiEI	CGRYCG	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	29, 485
BsnI	GGCC	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	3 cut(s)	340, 376, 463
BspLI	GGNNCC	2 cut(s)	21, 477
BspT104I	TTCGAA	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	475
BsrDI	GCAATG	2 cut(s)	249, 351
BssECI	CCNNGG	4 cut(s)	40, 284, 285, 414
BssMI	GATC	1 cut(s)	103
BssSI	CACGAG	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	5 cut(s)	80, 126, 149, 208, 218
BstBI	TTCGAA	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	3 cut(s)	327, 363, 471
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	284
BstV1I	GCAGC	2 cut(s)	182, 455
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	419
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	3 cut(s)	154, 204, 278
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	20
CseI	GACGC	2 cut(s)	176, 497
Csp6I	GTAC	1 cut(s)	476
CviJI	RGCY	9 cut(s)	5, 98, 173, 260, 367, 419, 446, 458, 498
CviKI_1	RGCY	9 cut(s)	5, 98, 173, 260, 367, 419, 446, 458, 498
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	3 cut(s)	327, 363, 471
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	414
Eco147I	AGGCCT	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	20
Eco57I	CTGAAG	2 cut(s)	251, 285
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaiI	YATR	2 cut(s)	95, 396
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	171, 444
Fsp4HI	GCNGC	2 cut(s)	171, 444
GluI	GCNGC	2 cut(s)	171, 444
HaeIII	GGCC	1 cut(s)	419
HgaI	GACGC	2 cut(s)	176, 497
HinfI	GANTC	4 cut(s)	178, 226, 353, 410
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	3 cut(s)	44, 231, 472
Hpy188III	TCNNGA	1 cut(s)	426
HpyAV	CCTTC	4 cut(s)	226, 260, 301, 430
HpyCH4III	ACNGT	5 cut(s)	80, 126, 149, 208, 218
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	256, 344, 394, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	3 cut(s)	327, 363, 471
HpySE526I	ACGT	1 cut(s)	132
KpnI	GGTACC	1 cut(s)	479
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	495
LpnPI	CCDG	5 cut(s)	92, 242, 271, 298, 314
Lsp1109I	GCAGC	2 cut(s)	182, 455
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MfeI	CAATTG	1 cut(s)	339
MluCI	AATT	4 cut(s)	159, 339, 435, 482
MlyI	GAGTC	2 cut(s)	362, 404
MmeI	TCCRAC	2 cut(s)	47, 282
MnlI	CCTC	5 cut(s)	10, 50, 372, 433, 466
MseI	TTAA	3 cut(s)	158, 294, 384
MslI	CAYNNNNRTG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	286
MunI	CAATTG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeII	GATC	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	21, 477
NmuCI	GTSAC	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	433
OliI	CACNNNNGTG	1 cut(s)	81
PasI	CCCWGGG	1 cut(s)	285
PceI	AGGCCT	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	178, 226
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	172, 445
PleI	GAGTC	2 cut(s)	361, 404
PpsI	GAGTC	2 cut(s)	361, 404
PshBI	ATTAAT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	21, 477
PspPI	GGNCC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	158, 294, 384
SatI	GCNGC	2 cut(s)	171, 444
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	2 cut(s)	362, 404
ScrFI	CCNGG	1 cut(s)	286
SetI	ASST	7 cut(s)	42, 100, 135, 364, 369, 477, 500
SfaNI	GCATC	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	433
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	350, 424
SmoI	CTYRAG	2 cut(s)	350, 424
Sse9I	AATT	4 cut(s)	159, 339, 435, 482
SseBI	AGGCCT	1 cut(s)	419
StuI	AGGCCT	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	5 cut(s)	80, 126, 149, 208, 218
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	36, 433
TasI	AATT	4 cut(s)	159, 339, 435, 482
TfiI	GAWTC	2 cut(s)	178, 226
Tru1I	TTAA	3 cut(s)	158, 294, 384
Tru9I	TTAA	3 cut(s)	158, 294, 384
TscAI	CASTG	3 cut(s)	154, 211, 285
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	170, 443
Tsp45I	GTSAC	1 cut(s)	164
TspRI	CASTG	3 cut(s)	154, 211, 285
Van91I	CCANNNNNTGG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.