Rh2CG077900

Transcription initiation factor TFIID

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003127
Physical Location & Seq
Forward (+)
6320234 .. 6321249
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG077900.1

Sequence Viewer

Length: 270 bp
ATGAGTTTCATCTTCGCAAACAAAAAACACCCGCAGATTAATCTGTTGGAGAAGGACAATGATGTTGCTGCTCAGGCACAAGCAATTGCAATGCTTGAGTCCTTACCTCAGCTTACATTTTGTGTAGTTAATGCTCTACATAACTTTCTTGTTGACTCCAAGGCCTTCTCAAGAGTTCGAATTGAGGCAGCCTTTGGATTGGCTAATACATCATCTGAGGTACCACAATTCGGTTATAGGAGCTTTGCAGAGCGTCAATGCCAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Peptidase_M1

Protein Analysis

89

Amino Acids

9.98

Weight (kDa)

6.71

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TAF2_C PF25577 16 - 73 5e-06 TAF2-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 220
AccB1I GGYRCC 1 cut(s) 220
AciI CCGC 1 cut(s) 32
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 230
AluBI AGCT 2 cut(s) 112, 243
AluI AGCT 2 cut(s) 112, 243
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 68, 188
AseI ATTAAT 1 cut(s) 39
Asp718I GGTACC 1 cut(s) 220
AsuII TTCGAA 1 cut(s) 178
BanI GGYRCC 1 cut(s) 220
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 55, 200
BisI GCNGC 2 cut(s) 69, 189
BlsI GCNGC 2 cut(s) 70, 190
BmiI GGNNCC 1 cut(s) 222
Bpu10I CCTNAGC 2 cut(s) 72, 108
Bpu14I TTCGAA 1 cut(s) 178
BpuEI CTTGAG 2 cut(s) 116, 154
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 3 cut(s) 86, 122, 207
BseXI GCAGC 2 cut(s) 55, 200
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 230
BsnI GGCC 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 178
BspACI CCGC 1 cut(s) 32
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 3 cut(s) 85, 121, 208
BspLI GGNNCC 1 cut(s) 222
BspT104I TTCGAA 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 159
BstBI TTCGAA 1 cut(s) 178
BstDEI CTNAG 3 cut(s) 72, 108, 216
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstV1I GCAGC 2 cut(s) 55, 200
BsuRI GGCC 1 cut(s) 164
CseI GACGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 221
CviJI RGCY 5 cut(s) 112, 164, 191, 203, 243
CviKI_1 RGCY 5 cut(s) 112, 164, 191, 203, 243
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 3 cut(s) 72, 108, 216
Eco130I CCWWGG 1 cut(s) 159
Eco147I AGGCCT 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaiI YATR 2 cut(s) 141, 237
FauI CCCGC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 69, 189
Fsp4HI GCNGC 2 cut(s) 69, 189
GluI GCNGC 2 cut(s) 69, 189
HaeIII GGCC 1 cut(s) 164
HgaI GACGC 1 cut(s) 242
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 98, 155
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 46, 175
HpyCH4V TGCA 2 cut(s) 89, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 3 cut(s) 72, 108, 216
KpnI GGTACC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 1 cut(s) 59
Lsp1109I GCAGC 2 cut(s) 55, 200
MboII GAAGA 1 cut(s) 4
MfeI CAATTG 1 cut(s) 84
MluCI AATT 4 cut(s) 84, 180, 227, 263
MlyI GAGTC 2 cut(s) 107, 149
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 3 cut(s) 117, 178, 211
MseI TTAA 2 cut(s) 39, 129
MunI CAATTG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 222
NspV TTCGAA 1 cut(s) 178
PceI AGGCCT 1 cut(s) 164
PkrI GCNGC 2 cut(s) 70, 190
PleI GAGTC 2 cut(s) 106, 149
PpsI GAGTC 2 cut(s) 106, 149
PshBI ATTAAT 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 222
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 39, 129
SatI GCNGC 2 cut(s) 69, 189
SchI GAGTC 2 cut(s) 107, 149
SetI ASST 4 cut(s) 109, 114, 222, 245
SfuI TTCGAA 1 cut(s) 178
SgeI CNNG 7 cut(s) 43, 86, 92, 107, 161, 172, 183
SmlI CTYRAG 2 cut(s) 95, 169
SmoI CTYRAG 2 cut(s) 95, 169
Sse9I AATT 4 cut(s) 84, 180, 227, 263
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 1 cut(s) 32
StuI AGGCCT 1 cut(s) 164
StyI CCWWGG 1 cut(s) 159
TaqI TCGA 1 cut(s) 178
TasI AATT 4 cut(s) 84, 180, 227, 263
Tru1I TTAA 2 cut(s) 39, 129
Tru9I TTAA 2 cut(s) 39, 129
TseI GCWGC 2 cut(s) 68, 188
VspI ATTAAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.