Transcription initiation factor TFIID
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73960 AT1G73960 |
| fragaria_vesca | FvH4_5g12730 |
| malus_domestica | MD06G1210800.v1.1 MD06G1211000.v1.1 MD14G1221500.v1.1 MD14G1221600.v1.1 |
| prunus_persica | Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 |
| pyrus_communis | pycom06g18830 pycom14g18330 |
| rosa_chinensis | RchiOBHm_Chr7g0184581 |
| rosa_laevigata | RLG00000003716 RLG00000004966 RLG00000020303 |
| rosa_multiflora | Rmu_ssc0000289.1_g000035 |
| rosa_roxburghii | Rroxscaffold_3G00269500 Rroxscaffold_7G00196400 |
| rosa_rugosa | Rorug06G0007300 Rorug07G0060900 |
| rosa_samantha | Rh2BG075800 Rh2CG077900 Rh5DG337600 Rh5DG495400 Rh6AG042200 Rh6AG254600 Rh7AG079100 Rh7BG068200 Rh7BG189600 Rh7CG069000 Rh7DG068300 Rh7DG191200 Rh7DG191900 |
| rosa_wichuraiana | Rw7G005620 Rw7G016350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 879, 2211 |
| AarI | CACCTGC | 1 cut(s) | 2779 |
| Acc36I | ACCTGC | 2 cut(s) | 302, 2779 |
| AccB1I | GGYRCC | 2 cut(s) | 1099, 4107 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 149, 1757 |
| AccBSI | CCGCTC | 1 cut(s) | 4135 |
| AccI | GTMKAC | 2 cut(s) | 201, 2188 |
| AccII | CGCG | 3 cut(s) | 2625, 2735, 4217 |
| AcuI | CTGAAG | 4 cut(s) | 2516, 2764, 3120, 3936 |
| AcyI | GRCGYC | 1 cut(s) | 33 |
| AdeI | CACNNNGTG | 1 cut(s) | 3671 |
| AfaI | GTAC | 9 cut(s) | 119, 227, 1444, 1729, 1977, 2279, 2381, 2991, 4354 |
| AfeI | AGCGCT | 1 cut(s) | 4142 |
| AflII | CTTAAG | 1 cut(s) | 1249 |
| AflIII | ACRYGT | 1 cut(s) | 807 |
| AhlI | ACTAGT | 1 cut(s) | 3623 |
| AjnI | CCWGG | 8 cut(s) | 177, 669, 1059, 1690, 3232, 3939, 4331, 4367 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 452, 484, 2442, 2474, 3408, 3438, 3440, 3470 |
| Alw21I | GWGCWC | 8 cut(s) | 296, 562, 739, 1613, 1876, 2698, 3472, 3878 |
| Alw26I | GTCTC | 6 cut(s) | 497, 1665, 2765, 3737, 3983, 4190 |
| Alw44I | GTGCAC | 3 cut(s) | 558, 1609, 3874 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 1661, 1777, 2165, 3713, 3746 |
| Ama87I | CYCGRG | 3 cut(s) | 1094, 1367, 4121 |
| Aor51HI | AGCGCT | 1 cut(s) | 4142 |
| ApaI | GGGCCC | 1 cut(s) | 2974 |
| ApaLI | GTGCAC | 3 cut(s) | 558, 1609, 3874 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1384, 1411, 1416, 1443 |
| AseI | ATTAAT | 1 cut(s) | 1989 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 774, 1509 |
| AspA2I | CCTAGG | 2 cut(s) | 3929, 3998 |
| AspLEI | GCGC | 3 cut(s) | 2502, 3724, 4143 |
| AspS9I | GGNCC | 9 cut(s) | 53, 349, 969, 1183, 1364, 2574, 2970, 2971, 3695 |
| AsuC2I | CCSGG | 2 cut(s) | 52, 3805 |
| AsuHPI | GGTGA | 8 cut(s) | 776, 1081, 1688, 1899, 2803, 3329, 3860, 3918 |
| AsuII | TTCGAA | 1 cut(s) | 2128 |
| AvaI | CYCGRG | 3 cut(s) | 1094, 1367, 4121 |
| AvaII | GGWCC | 3 cut(s) | 349, 1364, 2574 |
| AvrII | CCTAGG | 2 cut(s) | 3929, 3998 |
| AxyI | CCTNAGG | 1 cut(s) | 4338 |
| BaeGI | GKGCMC | 5 cut(s) | 562, 1613, 2974, 3878, 4110 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2533, 2566 |
| BamHI | GGATCC | 1 cut(s) | 3800 |
| BanI | GGYRCC | 2 cut(s) | 1099, 4107 |
| BanII | GRGCYC | 5 cut(s) | 296, 1411, 1714, 2974, 4290 |
| BauI | CACGAG | 2 cut(s) | 3038, 4047 |
| BbsI | GAAGAC | 1 cut(s) | 2407 |
| Bbv12I | GWGCWC | 8 cut(s) | 296, 562, 739, 1613, 1876, 2698, 3472, 3878 |
| BbvCI | CCTCAGC | 1 cut(s) | 3909 |
| BceAI | ACGGC | 2 cut(s) | 220, 569 |
| BciT130I | CCWGG | 8 cut(s) | 179, 671, 1061, 1692, 3234, 3941, 4333, 4369 |
| BciVI | GTATCC | 1 cut(s) | 2164 |
| BclI | TGATCA | 6 cut(s) | 363, 781, 1021, 1735, 3688, 4311 |
| BcnI | CCSGG | 2 cut(s) | 52, 3805 |
| BcoDI | GTCTC | 6 cut(s) | 497, 1665, 2765, 3737, 3983, 4190 |
| BcuI | ACTAGT | 1 cut(s) | 3623 |
| BfaI | CTAG | 8 cut(s) | 1809, 1844, 1883, 2538, 3017, 3624, 3930, 3999 |
| BfmI | CTRYAG | 3 cut(s) | 401, 846, 2307 |
| BfoI | RGCGCY | 1 cut(s) | 4144 |
| BfrI | CTTAAG | 1 cut(s) | 1249 |
| BfuAI | ACCTGC | 2 cut(s) | 302, 2779 |
| BfuI | GTATCC | 1 cut(s) | 2164 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 308 |
| BglII | AGATCT | 1 cut(s) | 3611 |
| BlnI | CCTAGG | 2 cut(s) | 3929, 3998 |
| BlpI | GCTNAGC | 1 cut(s) | 4284 |
| BmcAI | AGTACT | 2 cut(s) | 227, 2279 |
| Bme18I | GGWCC | 3 cut(s) | 349, 1364, 2574 |
| BmeT110I | CYCGRG | 3 cut(s) | 1094, 1367, 4121 |
| BmgT120I | GGNCC | 9 cut(s) | 53, 349, 969, 1183, 1364, 2574, 2970, 2971, 3695 |
| BmrI | ACTGGG | 2 cut(s) | 1535, 4284 |
| BmuI | ACTGGG | 2 cut(s) | 1535, 4284 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1369 |
| BpiI | GAAGAC | 1 cut(s) | 2407 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2854, 2886 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2022, 3909 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4284 |
| Bpu14I | TTCGAA | 1 cut(s) | 2128 |
| BpuEI | CTTGAG | 7 cut(s) | 356, 978, 1395, 1505, 1567, 2309, 2729 |
| BpuMI | CCSGG | 2 cut(s) | 52, 3805 |
| Bsa29I | ATCGAT | 1 cut(s) | 96 |
| BsaAI | YACGTR | 1 cut(s) | 1604 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1703 |
| BsaHI | GRCGYC | 1 cut(s) | 33 |
| BsaI | GGTCTC | 1 cut(s) | 4190 |
| BsaWI | WCCGGW | 2 cut(s) | 3392, 4199 |
| Bse118I | RCCGGY | 2 cut(s) | 3586, 4258 |
| Bse21I | CCTNAGG | 1 cut(s) | 4338 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1703 |
| BseBI | CCWGG | 8 cut(s) | 179, 671, 1061, 1692, 3234, 3941, 4333, 4369 |
| BseCI | ATCGAT | 1 cut(s) | 96 |
| BseJI | GATNNNNATC | 1 cut(s) | 1703 |
| BseRI | GAGGAG | 1 cut(s) | 684 |
| BseSI | GKGCMC | 5 cut(s) | 562, 1613, 2974, 3878, 4110 |
| BseYI | CCCAGC | 1 cut(s) | 1133 |
| BsgI | GTGCAG | 2 cut(s) | 2412, 3885 |
| Bsh1236I | CGCG | 3 cut(s) | 2625, 2735, 4217 |
| BshNI | GGYRCC | 2 cut(s) | 1099, 4107 |
| BshVI | ATCGAT | 1 cut(s) | 96 |
| BsiHKAI | GWGCWC | 8 cut(s) | 296, 562, 739, 1613, 1876, 2698, 3472, 3878 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1094, 1367, 4121 |
| BsiSI | CCGG | 9 cut(s) | 51, 390, 1877, 2902, 3393, 3587, 3805, 4200, 4259 |
| BslFI | GGGAC | 5 cut(s) | 125, 335, 1377, 2560, 4112 |
| BsmAI | GTCTC | 6 cut(s) | 497, 1665, 2765, 3737, 3983, 4190 |
| BsmBI | CGTCTC | 2 cut(s) | 497, 1665 |
| BsmFI | GGGAC | 5 cut(s) | 125, 335, 1377, 2560, 4112 |
| BsmI | GAATGC | 1 cut(s) | 380 |
| Bso31I | GGTCTC | 1 cut(s) | 4190 |
| BsoBI | CYCGRG | 3 cut(s) | 1094, 1367, 4121 |
| Bsp119I | TTCGAA | 1 cut(s) | 2128 |
| Bsp120I | GGGCCC | 1 cut(s) | 2970 |
| Bsp1407I | TGTACA | 1 cut(s) | 1975 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4284 |
| BspDI | ATCGAT | 1 cut(s) | 96 |
| BspFNI | CGCG | 3 cut(s) | 2625, 2735, 4217 |
| BspHI | TCATGA | 3 cut(s) | 520, 1714, 2263 |
| BspMAI | CTGCAG | 1 cut(s) | 405 |
| BspMI | ACCTGC | 2 cut(s) | 302, 2779 |
| BspT104I | TTCGAA | 1 cut(s) | 2128 |
| BspT107I | GGYRCC | 2 cut(s) | 1099, 4107 |
| BspTI | CTTAAG | 1 cut(s) | 1249 |
| BspTNI | GGTCTC | 1 cut(s) | 4190 |
| BsrBI | CCGCTC | 1 cut(s) | 4135 |
| BsrFI | RCCGGY | 2 cut(s) | 3586, 4258 |
| BsrGI | TGTACA | 1 cut(s) | 1975 |
| BssAI | RCCGGY | 2 cut(s) | 3586, 4258 |
| BssNI | GRCGYC | 1 cut(s) | 33 |
| BssSI | CACGAG | 2 cut(s) | 3038, 4047 |
| BssT1I | CCWWGG | 5 cut(s) | 2109, 3213, 3483, 3929, 3998 |
| Bst2BI | CACGAG | 2 cut(s) | 3038, 4047 |
| Bst2UI | CCWGG | 8 cut(s) | 179, 671, 1061, 1692, 3234, 3941, 4333, 4369 |
| Bst6I | CTCTTC | 4 cut(s) | 260, 2496, 2763, 4047 |
| BstACI | GRCGYC | 1 cut(s) | 33 |
| BstAFI | CTTAAG | 1 cut(s) | 1249 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 463, 1211, 3836 |
| BstAUI | TGTACA | 1 cut(s) | 1975 |
| BstBAI | YACGTR | 1 cut(s) | 1604 |
| BstBI | TTCGAA | 1 cut(s) | 2128 |
| BstDSI | CCRYGG | 1 cut(s) | 4215 |
| BstFNI | CGCG | 3 cut(s) | 2625, 2735, 4217 |
| BstH2I | RGCGCY | 1 cut(s) | 4144 |
| BstHHI | GCGC | 3 cut(s) | 2502, 3724, 4143 |
| BstMAI | GTCTC | 6 cut(s) | 497, 1665, 2765, 3737, 3983, 4190 |
| BstNI | CCWGG | 8 cut(s) | 179, 671, 1061, 1692, 3234, 3941, 4333, 4369 |
| BstNSI | RCATGY | 3 cut(s) | 811, 2306, 2810 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1369 |
| BstSFI | CTRYAG | 3 cut(s) | 401, 846, 2307 |
| BstSLI | GKGCMC | 5 cut(s) | 562, 1613, 2974, 3878, 4110 |
| BstUI | CGCG | 3 cut(s) | 2625, 2735, 4217 |
| BstV2I | GAAGAC | 1 cut(s) | 2407 |
| BstX2I | RGATCY | 6 cut(s) | 1433, 2837, 3611, 3800, 3919, 4295 |
| BstYI | RGATCY | 6 cut(s) | 1433, 2837, 3611, 3800, 3919, 4295 |
| Bsu15I | ATCGAT | 1 cut(s) | 96 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4338 |
| BsuI | GTATCC | 1 cut(s) | 2164 |
| BsuTUI | ATCGAT | 1 cut(s) | 96 |
| BtgI | CCRYGG | 1 cut(s) | 4215 |
| BtsI | GCAGTG | 4 cut(s) | 2716, 3876, 3878, 3902 |
| BveI | ACCTGC | 2 cut(s) | 302, 2779 |
| CaiI | CAGNNNCTG | 5 cut(s) | 1661, 1777, 2165, 3713, 3746 |
| CciI | TCATGA | 3 cut(s) | 520, 1714, 2263 |
| CfoI | GCGC | 3 cut(s) | 2502, 3724, 4143 |
| Cfr10I | RCCGGY | 2 cut(s) | 3586, 4258 |
| Cfr13I | GGNCC | 9 cut(s) | 53, 349, 969, 1183, 1364, 2574, 2970, 2971, 3695 |
| Cfr42I | CCGCGG | 1 cut(s) | 4218 |
| ClaI | ATCGAT | 1 cut(s) | 96 |
| CseI | GACGC | 5 cut(s) | 41, 92, 1478, 1821, 2741 |
| CsiI | ACCWGGT | 1 cut(s) | 669 |
| Csp6I | GTAC | 9 cut(s) | 118, 226, 1443, 1728, 1976, 2278, 2380, 2990, 4353 |
| CviQI | GTAC | 9 cut(s) | 118, 226, 1443, 1728, 1976, 2278, 2380, 2990, 4353 |
| DraIII | CACNNNGTG | 1 cut(s) | 3671 |
| Eam1104I | CTCTTC | 4 cut(s) | 260, 2496, 2763, 4047 |
| EarI | CTCTTC | 4 cut(s) | 260, 2496, 2763, 4047 |
| Ecl136II | GAGCTC | 1 cut(s) | 294 |
| Eco130I | CCWWGG | 5 cut(s) | 2109, 3213, 3483, 3929, 3998 |
| Eco147I | AGGCCT | 2 cut(s) | 2114, 4336 |
| Eco24I | GRGCYC | 5 cut(s) | 296, 1411, 1714, 2974, 4290 |
| Eco31I | GGTCTC | 1 cut(s) | 4190 |
| Eco32I | GATATC | 1 cut(s) | 747 |
| Eco47I | GGWCC | 3 cut(s) | 349, 1364, 2574 |
| Eco47III | AGCGCT | 1 cut(s) | 4142 |
| Eco53kI | GAGCTC | 1 cut(s) | 294 |
| Eco57I | CTGAAG | 4 cut(s) | 2516, 2764, 3120, 3936 |
| Eco81I | CCTNAGG | 1 cut(s) | 4338 |
| Eco88I | CYCGRG | 3 cut(s) | 1094, 1367, 4121 |
| EcoICRI | GAGCTC | 1 cut(s) | 294 |
| EcoO109I | RGGNCCY | 5 cut(s) | 969, 1364, 2574, 2970, 2971 |
| EcoRI | GAATTC | 1 cut(s) | 510 |
| EcoRII | CCWGG | 8 cut(s) | 177, 669, 1059, 1690, 3232, 3939, 4331, 4367 |
| EcoRV | GATATC | 1 cut(s) | 747 |
| EcoT14I | CCWWGG | 5 cut(s) | 2109, 3213, 3483, 3929, 3998 |
| EcoT38I | GRGCYC | 5 cut(s) | 296, 1411, 1714, 2974, 4290 |
| ErhI | CCWWGG | 5 cut(s) | 2109, 3213, 3483, 3929, 3998 |
| Esp3I | CGTCTC | 2 cut(s) | 497, 1665 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 3476, 3508, 3506, 3538, 4230, 4262 |
| FaqI | GGGAC | 5 cut(s) | 125, 335, 1377, 2560, 4112 |
| FauI | CCCGC | 3 cut(s) | 240, 1193, 4089 |
| FauNDI | CATATG | 1 cut(s) | 706 |
| FbaI | TGATCA | 6 cut(s) | 363, 781, 1021, 1735, 3688, 4311 |
| FblI | GTMKAC | 2 cut(s) | 201, 2188 |
| FriOI | GRGCYC | 5 cut(s) | 296, 1411, 1714, 2974, 4290 |
| FspBI | CTAG | 8 cut(s) | 1809, 1844, 1883, 2538, 3017, 3624, 3930, 3999 |
| GlaI | GCGC | 3 cut(s) | 2501, 3723, 4142 |
| GsaI | CCCAGC | 1 cut(s) | 1137 |
| HaeII | RGCGCY | 1 cut(s) | 4144 |
| HapII | CCGG | 9 cut(s) | 51, 390, 1877, 2902, 3393, 3587, 3805, 4200, 4259 |
| HgaI | GACGC | 5 cut(s) | 41, 92, 1478, 1821, 2741 |
| HhaI | GCGC | 3 cut(s) | 2502, 3724, 4143 |
| Hin1I | GRCGYC | 1 cut(s) | 33 |
| Hin6I | GCGC | 3 cut(s) | 2500, 3722, 4141 |
| HinP1I | GCGC | 3 cut(s) | 2500, 3722, 4141 |
| HincII | GTYRAC | 2 cut(s) | 202, 4012 |
| HindII | GTYRAC | 2 cut(s) | 202, 4012 |
| HindIII | AAGCTT | 4 cut(s) | 658, 833, 1799, 3031 |
| HpaI | GTTAAC | 1 cut(s) | 4012 |
| HpaII | CCGG | 9 cut(s) | 51, 390, 1877, 2902, 3393, 3587, 3805, 4200, 4259 |
| HphI | GGTGA | 8 cut(s) | 776, 1081, 1688, 1899, 2803, 3329, 3860, 3918 |
| Hpy166II | GTNNAC | 9 cut(s) | 120, 202, 560, 593, 621, 1611, 2189, 3876, 4012 |
| Hpy8I | GTNNAC | 9 cut(s) | 120, 202, 560, 593, 621, 1611, 2189, 3876, 4012 |
| Hpy99I | CGWCG | 3 cut(s) | 108, 206, 289 |
| HpyCH4IV | ACGT | 2 cut(s) | 284, 1603 |
| HpySE526I | ACGT | 2 cut(s) | 284, 1603 |
| Hsp92I | GRCGYC | 1 cut(s) | 33 |
| HspAI | GCGC | 3 cut(s) | 2500, 3722, 4141 |
| KflI | GGGWCCC | 1 cut(s) | 1364 |
| KroI | GCCGGC | 1 cut(s) | 4258 |
| KroNI | GCCGGC | 1 cut(s) | 4260 |
| Ksp22I | TGATCA | 6 cut(s) | 363, 781, 1021, 1735, 3688, 4311 |
| KspAI | GTTAAC | 1 cut(s) | 4012 |
| KspI | CCGCGG | 1 cut(s) | 4218 |
| MabI | ACCWGGT | 1 cut(s) | 669 |
| MaeI | CTAG | 8 cut(s) | 1809, 1844, 1883, 2538, 3017, 3624, 3930, 3999 |
| MaeII | ACGT | 2 cut(s) | 284, 1603 |
| MaeIII | GTNAC | 5 cut(s) | 162, 280, 1676, 3663, 3842 |
| MbiI | CCGCTC | 1 cut(s) | 4135 |
| MfeI | CAATTG | 3 cut(s) | 367, 2034, 3453 |
| MflI | RGATCY | 6 cut(s) | 1433, 2837, 3611, 3800, 3919, 4295 |
| MlyI | GAGTC | 5 cut(s) | 1379, 2057, 2099, 2235, 2447 |
| MmeI | TCCRAC | 5 cut(s) | 1329, 1602, 1977, 2425, 3588 |
| MroNI | GCCGGC | 1 cut(s) | 4258 |
| MroXI | GAANNNNTTC | 2 cut(s) | 774, 1509 |
| MslI | CAYNNNNRTG | 5 cut(s) | 249, 519, 958, 3117, 4113 |
| MspA1I | CMGCKG | 4 cut(s) | 1774, 2565, 4217, 4283 |
| MspCI | CTTAAG | 1 cut(s) | 1249 |
| MspI | CCGG | 9 cut(s) | 51, 390, 1877, 2902, 3393, 3587, 3805, 4200, 4259 |
| MunI | CAATTG | 3 cut(s) | 367, 2034, 3453 |
| Mva1269I | GAATGC | 1 cut(s) | 380 |
| MvaI | CCWGG | 8 cut(s) | 179, 671, 1061, 1692, 3234, 3941, 4333, 4369 |
| MvnI | CGCG | 3 cut(s) | 2625, 2735, 4217 |
| NaeI | GCCGGC | 1 cut(s) | 4260 |
| NciI | CCSGG | 2 cut(s) | 52, 3805 |
| NdeI | CATATG | 1 cut(s) | 706 |
| NgoMIV | GCCGGC | 1 cut(s) | 4258 |
| NmeAIII | GCCGAG | 1 cut(s) | 315 |
| NmuCI | GTSAC | 3 cut(s) | 1676, 3663, 3842 |
| NspI | RCATGY | 3 cut(s) | 811, 2306, 2810 |
| NspV | TTCGAA | 1 cut(s) | 2128 |
| PaeI | GCATGC | 1 cut(s) | 2810 |
| PagI | TCATGA | 3 cut(s) | 520, 1714, 2263 |
| PaqCI | CACCTGC | 1 cut(s) | 2779 |
| PceI | AGGCCT | 2 cut(s) | 2114, 4336 |
| PciI | ACATGT | 1 cut(s) | 807 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 39, 559 |
| PctI | GAATGC | 1 cut(s) | 380 |
| PdiI | GCCGGC | 1 cut(s) | 4260 |
| PdmI | GAANNNNTTC | 2 cut(s) | 774, 1509 |
| PfeI | GAWTC | 5 cut(s) | 1625, 1658, 1904, 3884, 4037 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 149, 1757 |
| PfoI | TCCNGGA | 3 cut(s) | 3232, 3803, 3939 |
| PleI | GAGTC | 5 cut(s) | 1378, 2056, 2099, 2235, 2446 |
| PpsI | GAGTC | 5 cut(s) | 1378, 2056, 2099, 2235, 2446 |
| Ppu21I | YACGTR | 1 cut(s) | 1604 |
| PpuMI | RGGWCCY | 2 cut(s) | 1364, 2574 |
| PscI | ACATGT | 1 cut(s) | 807 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1369 |
| PshBI | ATTAAT | 1 cut(s) | 1989 |
| PsiI | TTATAA | 2 cut(s) | 879, 2211 |
| Psp124BI | GAGCTC | 1 cut(s) | 296 |
| Psp5II | RGGWCCY | 2 cut(s) | 1364, 2574 |
| Psp6I | CCWGG | 8 cut(s) | 177, 669, 1059, 1690, 3232, 3939, 4331, 4367 |
| PspFI | CCCAGC | 1 cut(s) | 1133 |
| PspGI | CCWGG | 8 cut(s) | 177, 669, 1059, 1690, 3232, 3939, 4331, 4367 |
| PspOMI | GGGCCC | 1 cut(s) | 2970 |
| PspPI | GGNCC | 9 cut(s) | 53, 349, 969, 1183, 1364, 2574, 2970, 2971, 3695 |
| PspPPI | RGGWCCY | 2 cut(s) | 1364, 2574 |
| PstI | CTGCAG | 1 cut(s) | 405 |
| PstNI | CAGNNNCTG | 5 cut(s) | 1661, 1777, 2165, 3713, 3746 |
| PsuI | RGATCY | 6 cut(s) | 1433, 2837, 3611, 3800, 3919, 4295 |
| PvuII | CAGCTG | 3 cut(s) | 1774, 2565, 4283 |
| RsaI | GTAC | 9 cut(s) | 119, 227, 1444, 1729, 1977, 2279, 2381, 2991, 4354 |
| RsaNI | GTAC | 9 cut(s) | 118, 226, 1443, 1728, 1976, 2278, 2380, 2990, 4353 |
| RseI | CAYNNNNRTG | 5 cut(s) | 249, 519, 958, 3117, 4113 |
| SacI | GAGCTC | 1 cut(s) | 296 |
| SacII | CCGCGG | 1 cut(s) | 4218 |
| SalI | GTCGAC | 1 cut(s) | 200 |
| Sau96I | GGNCC | 9 cut(s) | 53, 349, 969, 1183, 1364, 2574, 2970, 2971, 3695 |
| ScaI | AGTACT | 2 cut(s) | 227, 2279 |
| SchI | GAGTC | 5 cut(s) | 1379, 2057, 2099, 2235, 2447 |
| SexAI | ACCWGGT | 1 cut(s) | 669 |
| SfcI | CTRYAG | 3 cut(s) | 401, 846, 2307 |
| Sfr303I | CCGCGG | 1 cut(s) | 4218 |
| SfuI | TTCGAA | 1 cut(s) | 2128 |
| SgrBI | CCGCGG | 1 cut(s) | 4218 |
| SinI | GGWCC | 3 cut(s) | 349, 1364, 2574 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 249, 519, 958, 3117, 4113 |
| SmlI | CTYRAG | 8 cut(s) | 335, 993, 1249, 1410, 1484, 1546, 2288, 2708 |
| SmoI | CTYRAG | 8 cut(s) | 335, 993, 1249, 1410, 1484, 1546, 2288, 2708 |
| SpeI | ACTAGT | 1 cut(s) | 3623 |
| SphI | GCATGC | 1 cut(s) | 2810 |
| SseBI | AGGCCT | 2 cut(s) | 2114, 4336 |
| SspI | AATATT | 2 cut(s) | 1166, 2759 |
| SspMI | CTAG | 8 cut(s) | 1809, 1844, 1883, 2538, 3017, 3624, 3930, 3999 |
| SstI | GAGCTC | 1 cut(s) | 296 |
| StuI | AGGCCT | 2 cut(s) | 2114, 4336 |
| StyI | CCWWGG | 5 cut(s) | 2109, 3213, 3483, 3929, 3998 |
| TaiI | ACGT | 2 cut(s) | 287, 1606 |
| TatI | WGTACW | 4 cut(s) | 225, 1975, 2277, 2379 |
| TauI | GCSGC | 3 cut(s) | 311, 2141, 2738 |
| TfiI | GAWTC | 5 cut(s) | 1625, 1658, 1904, 3884, 4037 |
| TseFI | GTSAC | 3 cut(s) | 1676, 3663, 3842 |
| Tsp45I | GTSAC | 3 cut(s) | 1676, 3663, 3842 |
| TspGWI | ACGGA | 4 cut(s) | 127, 1367, 3458, 3592 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 149, 1757 |
| Vha464I | CTTAAG | 1 cut(s) | 1249 |
| VneI | GTGCAC | 3 cut(s) | 558, 1609, 3874 |
| VpaK11BI | GGWCC | 3 cut(s) | 349, 1364, 2574 |
| VspI | ATTAAT | 1 cut(s) | 1989 |
| XbaI | TCTAGA | 1 cut(s) | 1882 |
| XceI | RCATGY | 3 cut(s) | 811, 2306, 2810 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2831, 3310, 3370 |
| XmaJI | CCTAGG | 2 cut(s) | 3929, 3998 |
| XmiI | GTMKAC | 2 cut(s) | 201, 2188 |
| XmnI | GAANNNNTTC | 2 cut(s) | 774, 1509 |
| XspI | CTAG | 8 cut(s) | 1809, 1844, 1883, 2538, 3017, 3624, 3930, 3999 |
| ZrmI | AGTACT | 2 cut(s) | 227, 2279 |