Transcription initiation factor TFIID
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73960 AT1G73960 |
| fragaria_vesca | FvH4_5g12730 |
| malus_domestica | MD06G1210800.v1.1 MD06G1211000.v1.1 MD14G1221500.v1.1 MD14G1221600.v1.1 |
| prunus_persica | Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 |
| pyrus_communis | pycom06g18830 pycom14g18330 |
| rosa_chinensis | RchiOBHm_Chr7g0184581 |
| rosa_laevigata | RLG00000003716 RLG00000004966 RLG00000020303 |
| rosa_multiflora | Rmu_ssc0000289.1_g000035 |
| rosa_roxburghii | Rroxscaffold_3G00269500 Rroxscaffold_7G00196400 |
| rosa_rugosa | Rorug06G0007300 Rorug07G0060900 |
| rosa_samantha | Rh2BG075800 Rh2CG077900 Rh5DG337600 Rh5DG495400 Rh6AG042200 Rh6AG254600 Rh7AG079100 Rh7BG068200 Rh7BG189600 Rh7CG069000 Rh7DG068300 Rh7DG191200 Rh7DG191900 |
| rosa_wichuraiana | Rw7G005620 Rw7G016350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 710 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1310, 1330 |
| AccBSI | CCGCTC | 1 cut(s) | 2738 |
| AccI | GTMKAC | 1 cut(s) | 1741 |
| AccII | CGCG | 3 cut(s) | 976, 2205, 3530 |
| AccIII | TCCGGA | 2 cut(s) | 331, 3013 |
| AciI | CCGC | 8 cut(s) | 53, 106, 245, 739, 1692, 2736, 2961, 3652 |
| AclWI | GGATC | 5 cut(s) | 236, 2398, 2948, 3361, 3668 |
| AcuI | CTGAAG | 3 cut(s) | 2317, 2862, 3521 |
| AcvI | CACGTG | 1 cut(s) | 2593 |
| AdeI | CACNNNGTG | 1 cut(s) | 843 |
| AflII | CTTAAG | 1 cut(s) | 2048 |
| AflIII | ACRYGT | 3 cut(s) | 360, 974, 2590 |
| AjnI | CCWGG | 5 cut(s) | 222, 1243, 2746, 3771, 3881 |
| AjuI | GAANNNNNNNTTGG | 5 cut(s) | 37, 1995, 2027, 2882, 2914 |
| Alw21I | GWGCWC | 4 cut(s) | 292, 2251, 2710, 3434 |
| Alw26I | GTCTC | 1 cut(s) | 50 |
| Alw44I | GTGCAC | 1 cut(s) | 3430 |
| AlwI | GGATC | 5 cut(s) | 236, 2398, 2948, 3361, 3668 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 229, 1214, 1330, 1718, 3266 |
| Ama87I | CYCGRG | 3 cut(s) | 920, 3677, 3887 |
| Aor13HI | TCCGGA | 2 cut(s) | 331, 3013 |
| AoxI | GGCC | 9 cut(s) | 1241, 1665, 1689, 2214, 2452, 2522, 2841, 3661, 3884 |
| ApaLI | GTGCAC | 1 cut(s) | 3430 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 246, 278 |
| AseI | ATTAAT | 2 cut(s) | 1542, 1985 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 327, 1062 |
| AspLEI | GCGC | 1 cut(s) | 802 |
| AspS9I | GGNCC | 6 cut(s) | 334, 917, 2127, 2523, 2912, 3885 |
| AsuHPI | GGTGA | 5 cut(s) | 1765, 2477, 2585, 3474, 3913 |
| AsuII | TTCGAA | 2 cut(s) | 1681, 3952 |
| AsuNHI | GCTAGC | 1 cut(s) | 3251 |
| AvaI | CYCGRG | 3 cut(s) | 920, 3677, 3887 |
| AvaII | GGWCC | 4 cut(s) | 334, 917, 2127, 2912 |
| BaeGI | GKGCMC | 1 cut(s) | 3434 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2086, 2119 |
| BanII | GRGCYC | 2 cut(s) | 964, 3840 |
| BauI | CACGAG | 2 cut(s) | 589, 3603 |
| BbrPI | CACGTG | 1 cut(s) | 2593 |
| Bbv12I | GWGCWC | 4 cut(s) | 292, 2251, 2710, 3434 |
| BbvCI | CCTCAGC | 2 cut(s) | 1100, 1611 |
| BceAI | ACGGC | 2 cut(s) | 596, 752 |
| BciT130I | CCWGG | 5 cut(s) | 224, 1245, 2748, 3773, 3883 |
| BciVI | GTATCC | 2 cut(s) | 514, 1717 |
| BclI | TGATCA | 1 cut(s) | 574 |
| BcoDI | GTCTC | 1 cut(s) | 50 |
| BfmI | CTRYAG | 3 cut(s) | 265, 399, 1860 |
| BfrI | CTTAAG | 1 cut(s) | 2048 |
| BfuI | GTATCC | 2 cut(s) | 514, 1717 |
| BglII | AGATCT | 2 cut(s) | 986, 3233 |
| BlpI | GCTNAGC | 1 cut(s) | 803 |
| BmcAI | AGTACT | 1 cut(s) | 997 |
| Bme1390I | CCNGG | 5 cut(s) | 224, 1245, 2748, 3773, 3883 |
| Bme18I | GGWCC | 4 cut(s) | 334, 917, 2127, 2912 |
| BmeT110I | CYCGRG | 3 cut(s) | 920, 3677, 3887 |
| BmgT120I | GGNCC | 6 cut(s) | 334, 917, 2127, 2523, 2912, 3885 |
| BmiI | GGNNCC | 8 cut(s) | 125, 918, 919, 2129, 2525, 2643, 2913, 3018 |
| BmrFI | CCNGG | 5 cut(s) | 224, 1245, 2748, 3773, 3883 |
| BmrI | ACTGGG | 1 cut(s) | 3834 |
| BmtI | GCTAGC | 1 cut(s) | 3255 |
| BmuI | ACTGGG | 1 cut(s) | 3834 |
| BoxI | GACNNNNGTC | 1 cut(s) | 922 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2407, 2439 |
| BpmI | CTGGAG | 8 cut(s) | 188, 1332, 1432, 1693, 2694, 2724, 2766, 2802 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1100, 1575, 1611, 3308 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 803 |
| Bpu14I | TTCGAA | 2 cut(s) | 1681, 3952 |
| BpuEI | CTTGAG | 6 cut(s) | 531, 532, 948, 1058, 1862, 3222 |
| BsaAI | YACGTR | 3 cut(s) | 1157, 2491, 2593 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1256 |
| BsaWI | WCCGGW | 3 cut(s) | 331, 1294, 3013 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1305, 1335 |
| Bse1I | ACTGG | 7 cut(s) | 281, 1094, 1449, 3158, 3370, 3830, 3840 |
| Bse3DI | GCAATG | 4 cut(s) | 211, 1599, 2561, 2772 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1256 |
| BseAI | TCCGGA | 2 cut(s) | 331, 3013 |
| BseBI | CCWGG | 5 cut(s) | 224, 1245, 2748, 3773, 3883 |
| BseJI | GATNNNNATC | 1 cut(s) | 1256 |
| BseMI | GCAATG | 4 cut(s) | 211, 1599, 2561, 2772 |
| BseNI | ACTGG | 7 cut(s) | 281, 1094, 1449, 3158, 3370, 3830, 3840 |
| BseSI | GKGCMC | 1 cut(s) | 3434 |
| BseYI | CCCAGC | 2 cut(s) | 686, 1071 |
| BsgI | GTGCAG | 3 cut(s) | 29, 2615, 3539 |
| Bsh1236I | CGCG | 3 cut(s) | 976, 2205, 3530 |
| BshFI | GGCC | 9 cut(s) | 1243, 1667, 1691, 2216, 2454, 2524, 2843, 3663, 3886 |
| BsiHKAI | GWGCWC | 4 cut(s) | 292, 2251, 2710, 3434 |
| BsiHKCI | CYCGRG | 3 cut(s) | 920, 3677, 3887 |
| BsiSI | CCGG | 3 cut(s) | 332, 1295, 3014 |
| BslFI | GGGAC | 2 cut(s) | 930, 2113 |
| BsmAI | GTCTC | 1 cut(s) | 50 |
| BsmFI | GGGAC | 2 cut(s) | 930, 2113 |
| BsnI | GGCC | 9 cut(s) | 1243, 1667, 1691, 2216, 2454, 2524, 2843, 3663, 3886 |
| BsoBI | CYCGRG | 3 cut(s) | 920, 3677, 3887 |
| Bsp119I | TTCGAA | 2 cut(s) | 1681, 3952 |
| Bsp1286I | GDGCHC | 6 cut(s) | 292, 964, 2251, 2710, 3434, 3840 |
| Bsp13I | TCCGGA | 2 cut(s) | 331, 3013 |
| Bsp1407I | TGTACA | 2 cut(s) | 1528, 3457 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 803 |
| Bsp19I | CCATGG | 3 cut(s) | 2721, 2793, 3084 |
| Bsp68I | TCGCGA | 1 cut(s) | 2205 |
| BspACI | CCGC | 8 cut(s) | 53, 106, 245, 739, 1692, 2736, 2961, 3652 |
| BspANI | GGCC | 9 cut(s) | 1243, 1667, 1691, 2216, 2454, 2524, 2843, 3663, 3886 |
| BspEI | TCCGGA | 2 cut(s) | 331, 3013 |
| BspFNI | CGCG | 3 cut(s) | 976, 2205, 3530 |
| BspHI | TCATGA | 2 cut(s) | 1267, 3343 |
| BspLI | GGNNCC | 8 cut(s) | 125, 918, 919, 2129, 2525, 2643, 2913, 3018 |
| BspOI | GCTAGC | 1 cut(s) | 3255 |
| BspPI | GGATC | 5 cut(s) | 236, 2398, 2948, 3361, 3668 |
| BspQI | GCTCTTC | 1 cut(s) | 2316 |
| BspT104I | TTCGAA | 2 cut(s) | 1681, 3952 |
| BspTI | CTTAAG | 1 cut(s) | 2048 |
| BsrBI | CCGCTC | 1 cut(s) | 2738 |
| BsrDI | GCAATG | 4 cut(s) | 211, 1599, 2561, 2772 |
| BsrGI | TGTACA | 2 cut(s) | 1528, 3457 |
| BsrI | ACTGG | 7 cut(s) | 281, 1094, 1449, 3158, 3370, 3830, 3840 |
| BssSI | CACGAG | 2 cut(s) | 589, 3603 |
| BssT1I | CCWWGG | 9 cut(s) | 1662, 2721, 2793, 2859, 2991, 3024, 3054, 3084, 3114 |
| Bst2BI | CACGAG | 2 cut(s) | 589, 3603 |
| Bst2UI | CCWGG | 5 cut(s) | 224, 1245, 2748, 3773, 3883 |
| Bst6I | CTCTTC | 2 cut(s) | 2049, 2316 |
| BstAFI | CTTAAG | 1 cut(s) | 2048 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 764, 843, 3389, 3398 |
| BstAUI | TGTACA | 2 cut(s) | 1528, 3457 |
| BstBAI | YACGTR | 3 cut(s) | 1157, 2491, 2593 |
| BstBI | TTCGAA | 2 cut(s) | 1681, 3952 |
| BstC8I | GCNNGC | 9 cut(s) | 111, 368, 372, 739, 2242, 2361, 3249, 3253, 3532 |
| BstDSI | CCRYGG | 3 cut(s) | 2721, 2793, 3084 |
| BstFNI | CGCG | 3 cut(s) | 976, 2205, 3530 |
| BstHHI | GCGC | 1 cut(s) | 802 |
| BstMAI | GTCTC | 1 cut(s) | 50 |
| BstNI | CCWGG | 5 cut(s) | 224, 1245, 2748, 3773, 3883 |
| BstNSI | RCATGY | 4 cut(s) | 364, 1859, 2363, 3251 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 922 |
| BstSCI | CCNGG | 5 cut(s) | 222, 1243, 2746, 3771, 3881 |
| BstSFI | CTRYAG | 3 cut(s) | 265, 399, 1860 |
| BstSLI | GKGCMC | 1 cut(s) | 3434 |
| BstUI | CGCG | 3 cut(s) | 976, 2205, 3530 |
| BstX2I | RGATCY | 5 cut(s) | 986, 2390, 2953, 3233, 3353 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 344 |
| BstYI | RGATCY | 5 cut(s) | 986, 2390, 2953, 3233, 3353 |
| BsuI | GTATCC | 2 cut(s) | 514, 1717 |
| BsuRI | GGCC | 9 cut(s) | 1243, 1667, 1691, 2216, 2454, 2524, 2843, 3663, 3886 |
| BtgI | CCRYGG | 3 cut(s) | 2721, 2793, 3084 |
| BtsI | GCAGTG | 4 cut(s) | 810, 2269, 3432, 3434 |
| BtuMI | TCGCGA | 1 cut(s) | 2205 |
| Cac8I | GCNNGC | 9 cut(s) | 111, 368, 372, 739, 2242, 2361, 3249, 3253, 3532 |
| CaiI | CAGNNNCTG | 5 cut(s) | 229, 1214, 1330, 1718, 3266 |
| CciI | TCATGA | 2 cut(s) | 1267, 3343 |
| CfoI | GCGC | 1 cut(s) | 802 |
| Cfr13I | GGNCC | 6 cut(s) | 334, 917, 2127, 2523, 2912, 3885 |
| CseI | GACGC | 3 cut(s) | 982, 1031, 1374 |
| CsiI | ACCWGGT | 1 cut(s) | 222 |
| DraIII | CACNNNGTG | 1 cut(s) | 843 |
| Eam1104I | CTCTTC | 2 cut(s) | 2049, 2316 |
| EarI | CTCTTC | 2 cut(s) | 2049, 2316 |
| EciI | GGCGGA | 1 cut(s) | 234 |
| Eco130I | CCWWGG | 9 cut(s) | 1662, 2721, 2793, 2859, 2991, 3024, 3054, 3084, 3114 |
| Eco147I | AGGCCT | 1 cut(s) | 1667 |
| Eco24I | GRGCYC | 2 cut(s) | 964, 3840 |
| Eco32I | GATATC | 4 cut(s) | 300, 2209, 3031, 3061 |
| Eco47I | GGWCC | 4 cut(s) | 334, 917, 2127, 2912 |
| Eco57I | CTGAAG | 3 cut(s) | 2317, 2862, 3521 |
| Eco72I | CACGTG | 1 cut(s) | 2593 |
| Eco88I | CYCGRG | 3 cut(s) | 920, 3677, 3887 |
| EcoO109I | RGGNCCY | 3 cut(s) | 917, 2127, 2523 |
| EcoRI | GAATTC | 2 cut(s) | 1058, 2264 |
| EcoRII | CCWGG | 5 cut(s) | 222, 1243, 2746, 3771, 3881 |
| EcoRV | GATATC | 4 cut(s) | 300, 2209, 3031, 3061 |
| EcoT14I | CCWWGG | 9 cut(s) | 1662, 2721, 2793, 2859, 2991, 3024, 3054, 3084, 3114 |
| EcoT38I | GRGCYC | 2 cut(s) | 964, 3840 |
| ErhI | CCWWGG | 9 cut(s) | 1662, 2721, 2793, 2859, 2991, 3024, 3054, 3084, 3114 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3017, 3049, 3047, 3079 |
| FaqI | GGGAC | 2 cut(s) | 930, 2113 |
| FauI | CCCGC | 2 cut(s) | 746, 3645 |
| FauNDI | CATATG | 2 cut(s) | 259, 2219 |
| FbaI | TGATCA | 1 cut(s) | 574 |
| FblI | GTMKAC | 1 cut(s) | 1741 |
| FriOI | GRGCYC | 2 cut(s) | 964, 3840 |
| GlaI | GCGC | 1 cut(s) | 801 |
| GsaI | CCCAGC | 2 cut(s) | 690, 1075 |
| GsuI | CTGGAG | 8 cut(s) | 188, 1332, 1432, 1693, 2694, 2724, 2766, 2802 |
| HaeIII | GGCC | 9 cut(s) | 1243, 1667, 1691, 2216, 2454, 2524, 2843, 3663, 3886 |
| HapII | CCGG | 3 cut(s) | 332, 1295, 3014 |
| HgaI | GACGC | 3 cut(s) | 982, 1031, 1374 |
| HhaI | GCGC | 1 cut(s) | 802 |
| Hin6I | GCGC | 1 cut(s) | 800 |
| HinP1I | GCGC | 1 cut(s) | 800 |
| HincII | GTYRAC | 1 cut(s) | 3334 |
| HindII | GTYRAC | 1 cut(s) | 3334 |
| HindIII | AAGCTT | 4 cut(s) | 211, 386, 1394, 2853 |
| HpaI | GTTAAC | 1 cut(s) | 3334 |
| HpaII | CCGG | 3 cut(s) | 332, 1295, 3014 |
| HphI | GGTGA | 5 cut(s) | 1765, 2477, 2585, 3474, 3913 |
| Hpy166II | GTNNAC | 7 cut(s) | 146, 174, 451, 1742, 3107, 3334, 3432 |
| Hpy8I | GTNNAC | 7 cut(s) | 146, 174, 451, 1742, 3107, 3334, 3432 |
| HpyCH4IV | ACGT | 5 cut(s) | 1156, 1283, 2490, 2592, 3777 |
| HpySE526I | ACGT | 5 cut(s) | 1156, 1283, 2490, 2592, 3777 |
| HspAI | GCGC | 1 cut(s) | 800 |
| KflI | GGGWCCC | 1 cut(s) | 917 |
| Kpn2I | TCCGGA | 2 cut(s) | 331, 3013 |
| Ksp22I | TGATCA | 1 cut(s) | 574 |
| KspAI | GTTAAC | 1 cut(s) | 3334 |
| LguI | GCTCTTC | 1 cut(s) | 2316 |
| MabI | ACCWGGT | 1 cut(s) | 222 |
| MaeII | ACGT | 5 cut(s) | 1156, 1283, 2490, 2592, 3777 |
| MaeIII | GTNAC | 7 cut(s) | 428, 1223, 1753, 2483, 2941, 3140, 3749 |
| MbiI | CCGCTC | 1 cut(s) | 2738 |
| MboII | GAAGA | 8 cut(s) | 577, 1971, 2036, 2333, 2471, 2611, 2876, 3218 |
| MfeI | CAATTG | 1 cut(s) | 1587 |
| MflI | RGATCY | 5 cut(s) | 986, 2390, 2953, 3233, 3353 |
| MhlI | GDGCHC | 6 cut(s) | 292, 964, 2251, 2710, 3434, 3840 |
| MluI | ACGCGT | 1 cut(s) | 974 |
| MlyI | GAGTC | 4 cut(s) | 932, 1652, 1788, 2416 |
| MmeI | TCCRAC | 5 cut(s) | 882, 1155, 1530, 1978, 3159 |
| MroI | TCCGGA | 2 cut(s) | 331, 3013 |
| MroXI | GAANNNNTTC | 2 cut(s) | 327, 1062 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1169, 2661, 2667, 3348, 3669 |
| MspA1I | CMGCKG | 3 cut(s) | 1327, 2118, 2963 |
| MspCI | CTTAAG | 1 cut(s) | 2048 |
| MspI | CCGG | 3 cut(s) | 332, 1295, 3014 |
| MspR9I | CCNGG | 5 cut(s) | 224, 1245, 2748, 3773, 3883 |
| MunI | CAATTG | 1 cut(s) | 1587 |
| MvaI | CCWGG | 5 cut(s) | 224, 1245, 2748, 3773, 3883 |
| MvnI | CGCG | 3 cut(s) | 976, 2205, 3530 |
| NcoI | CCATGG | 3 cut(s) | 2721, 2793, 3084 |
| NdeI | CATATG | 2 cut(s) | 259, 2219 |
| NheI | GCTAGC | 1 cut(s) | 3251 |
| NlaIV | GGNNCC | 8 cut(s) | 125, 918, 919, 2129, 2525, 2643, 2913, 3018 |
| NmuCI | GTSAC | 5 cut(s) | 1223, 1753, 2483, 3140, 3749 |
| NruI | TCGCGA | 1 cut(s) | 2205 |
| NspI | RCATGY | 4 cut(s) | 364, 1859, 2363, 3251 |
| NspV | TTCGAA | 2 cut(s) | 1681, 3952 |
| PaeI | GCATGC | 2 cut(s) | 2363, 3251 |
| PagI | TCATGA | 2 cut(s) | 1267, 3343 |
| PceI | AGGCCT | 1 cut(s) | 1667 |
| PciI | ACATGT | 1 cut(s) | 360 |
| PciSI | GCTCTTC | 1 cut(s) | 2316 |
| PdmI | GAANNNNTTC | 2 cut(s) | 327, 1062 |
| PfeI | GAWTC | 7 cut(s) | 187, 1178, 1211, 1457, 1601, 3440, 3931 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1310, 1330 |
| PleI | GAGTC | 4 cut(s) | 931, 1652, 1788, 2416 |
| PmaCI | CACGTG | 1 cut(s) | 2593 |
| PmlI | CACGTG | 1 cut(s) | 2593 |
| PpsI | GAGTC | 4 cut(s) | 931, 1652, 1788, 2416 |
| Ppu21I | YACGTR | 3 cut(s) | 1157, 2491, 2593 |
| PpuMI | RGGWCCY | 2 cut(s) | 917, 2127 |
| PscI | ACATGT | 1 cut(s) | 360 |
| PshAI | GACNNNNGTC | 1 cut(s) | 922 |
| PshBI | ATTAAT | 2 cut(s) | 1542, 1985 |
| PsiI | TTATAA | 1 cut(s) | 710 |
| Psp5II | RGGWCCY | 2 cut(s) | 917, 2127 |
| Psp6I | CCWGG | 5 cut(s) | 222, 1243, 2746, 3771, 3881 |
| PspCI | CACGTG | 1 cut(s) | 2593 |
| PspFI | CCCAGC | 2 cut(s) | 686, 1071 |
| PspGI | CCWGG | 5 cut(s) | 222, 1243, 2746, 3771, 3881 |
| PspN4I | GGNNCC | 8 cut(s) | 125, 918, 919, 2129, 2525, 2643, 2913, 3018 |
| PspPI | GGNCC | 6 cut(s) | 334, 917, 2127, 2523, 2912, 3885 |
| PspPPI | RGGWCCY | 2 cut(s) | 917, 2127 |
| PstNI | CAGNNNCTG | 5 cut(s) | 229, 1214, 1330, 1718, 3266 |
| PsuI | RGATCY | 5 cut(s) | 986, 2390, 2953, 3233, 3353 |
| PvuII | CAGCTG | 2 cut(s) | 1327, 2118 |
| RruI | TCGCGA | 1 cut(s) | 2205 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1169, 2661, 2667, 3348, 3669 |
| SapI | GCTCTTC | 1 cut(s) | 2316 |
| Sau96I | GGNCC | 6 cut(s) | 334, 917, 2127, 2523, 2912, 3885 |
| ScaI | AGTACT | 1 cut(s) | 997 |
| SchI | GAGTC | 4 cut(s) | 932, 1652, 1788, 2416 |
| ScrFI | CCNGG | 5 cut(s) | 224, 1245, 2748, 3773, 3883 |
| SduI | GDGCHC | 6 cut(s) | 292, 964, 2251, 2710, 3434, 3840 |
| SexAI | ACCWGGT | 1 cut(s) | 222 |
| SfcI | CTRYAG | 3 cut(s) | 265, 399, 1860 |
| SfuI | TTCGAA | 2 cut(s) | 1681, 3952 |
| SinI | GGWCC | 4 cut(s) | 334, 917, 2127, 2912 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1169, 2661, 2667, 3348, 3669 |
| SmlI | CTYRAG | 7 cut(s) | 511, 546, 963, 1037, 1841, 2048, 3237 |
| SmoI | CTYRAG | 7 cut(s) | 511, 546, 963, 1037, 1841, 2048, 3237 |
| SphI | GCATGC | 2 cut(s) | 2363, 3251 |
| SseBI | AGGCCT | 1 cut(s) | 1667 |
| SsiI | CCGC | 8 cut(s) | 53, 106, 245, 739, 1692, 2736, 2961, 3652 |
| StuI | AGGCCT | 1 cut(s) | 1667 |
| StyD4I | CCNGG | 5 cut(s) | 222, 1243, 2746, 3771, 3881 |
| StyI | CCWWGG | 9 cut(s) | 1662, 2721, 2793, 2859, 2991, 3024, 3054, 3084, 3114 |
| TaiI | ACGT | 5 cut(s) | 1159, 1286, 2493, 2595, 3780 |
| TaqI | TCGA | 7 cut(s) | 956, 1681, 1771, 3466, 3667, 3737, 3952 |
| TatI | WGTACW | 5 cut(s) | 995, 1528, 1932, 3457, 3595 |
| TauI | GCSGC | 2 cut(s) | 109, 1694 |
| TfiI | GAWTC | 7 cut(s) | 187, 1178, 1211, 1457, 1601, 3440, 3931 |
| TseFI | GTSAC | 5 cut(s) | 1223, 1753, 2483, 3140, 3749 |
| Tsp45I | GTSAC | 5 cut(s) | 1223, 1753, 2483, 3140, 3749 |
| TspGWI | ACGGA | 6 cut(s) | 199, 920, 1452, 1742, 2904, 3163 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1310, 1330 |
| Vha464I | CTTAAG | 1 cut(s) | 2048 |
| VneI | GTGCAC | 1 cut(s) | 3430 |
| VpaK11BI | GGWCC | 4 cut(s) | 334, 917, 2127, 2912 |
| VspI | ATTAAT | 2 cut(s) | 1542, 1985 |
| XbaI | TCTAGA | 1 cut(s) | 2690 |
| XceI | RCATGY | 4 cut(s) | 364, 1859, 2363, 3251 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2663, 2998, 3091 |
| XmiI | GTMKAC | 1 cut(s) | 1741 |
| XmnI | GAANNNNTTC | 2 cut(s) | 327, 1062 |
| ZrmI | AGTACT | 1 cut(s) | 997 |