Rh7DG068300

Transcription initiation factor TFIID

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003127
Physical Location & Seq
Forward (+)
5251448 .. 5262984
11537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG068300.1

Sequence Viewer

Length: 3963 bp
ATGTTGGTGCAGAATTTGAGGTTGGTTCGGATTGATTATTGGGTAGAGAAAGCGGAGACAGGGATTTACTTCTGTAATAATGTGCTACACACCGATAACCAAATGCGGCGTGCAAGGTGCTGGTTCCCTTGTATGGATGACTGTTCACAGAGCTGCTGCTATGATCTCGAGTTTACTGTGGCACGGAATCTTGTGGCTGTTAGCAATGGAAGCTTACTCTACCAGGTTCTGAGCAAGGATGATCCGCCTCGCAAAACATATGTCTATAGACTAGATGTTCCAGTTAGTGCTCGGTGGATATCTTTAGTGGTTGCACCCTTTGAAATCCTTCCGGACCACCAATCTGGTCTAATATCTCACATGTGCTTGCCAGCAAATCTGTCAAAGCTTCGCAACACTGTAGATTTTTTCCACGGTGCATTTAGCTGTTACAAGGATTATCTAGCGGTAAACTTTCCTTTTGGGTCATACAAACAAGTTTTTATAGAGCCTGAGATGGCAGTATCCTCCTTGAGTTCAGGGGCATCCATGAGCATTTTCAGTTCTCAAGTTTTATTTGATGAGAAGATTATTGATCAGACTATTGACACGAGGATTAAACTTGCATTTGCCCTTGCAAGACAATGGTTTGGTGTTTATATCACTCCTGATGCACCGAATGATGAGTGGCTGCTGGATGGTCTAGCTGGGTTTTTGACAGATTTATTTATAAAAAAGTATTTAGGAAATAATGAAGCCCGCTATCGGAGATACAAGGCAAATTGTGCCGTTTGTAGAGCAGATGATAGTGGTGCAACTGCGCTAAGCTCCACTGCTTCTTGTAAGGATTTGTTTGGCACTCAGTGCATTGGAATATACAGCAAAATTAGATCATGGAAATCTGTGGCTATACTTCAAATGTTGGAAAAGCAGATGGGACCCGAGTCTTTCCGTAAAATTTTGCAAACAATAGTTTCGAGGGCTCAAGATAAGACGCGTTCTCTGAGATCTCTCAGTACTAAGGAGTTTAGGCATTTTGCTAATAAAGTTGGTAATCTTGAGCGTCCTTTTCTCAAAGAATTCTTTCCTCGCTGGGTAGAACTGTGTGGTTGTCCAGTGCTGAGGATGGGCTTCTCCTACAACAAACGAAAGAATATGGTTGAAGTTGCAGTTTTACGTGGGTGCACAGAAATGTCGGATTCAAGTGCTTCAACTGTTAATGCTAATTCAGAATCTGAAAAGCGTGACAGTGATAGTGGATGGCCTGGAATGATGAGCATCAGAGTTCATGAACTTGATGGTACATTTGACCATCCGGTTCTGCCAATGGCTGGAGAAACAGTCCAGCTGCTGGAAATACAATGTCATTCAAAACTTGCTGCTAGACGCTTTCAGAAGCCTAAAAAGGGTTCAAAGCTTGATGGAGCAGATGATAATGGAGATGCAACTCCTGCCCTAGATATACGCTCCAGTATGGAATCTCCGTTGCTGTGGATGAGGGCAGATCCAGAAATGGAATACCTTGCTGAAATTCATTTCAATCAACCTGTACAGATGTGGATTAATCAGTTGGAGAAGGACAAAGATGTTGTTGCTCAGGCACAAGCAATTGCAATGCTTGAATCCTTACCTCAGCTTCCATTTTCTGTTGTTAATGCTCTTAATAACTTCCTCATTGACTCCAAGGCCTTCTGGAGAGTTCGAATTGAGGCTGCCTTTGCATTGGCTAATACAGCATCTGAGGATACGGATTGGGCTGGTCTACTCCATTTGGTGACATTCTATAAAAGTCGAAGGTTTGATGCAAACATTGGACTCCCCAAGCCAAATGACTTCCATGATATTCCCGAATACTTAGTTCTTGAGGCAATTCCACATGCTGTAGCTATGGTTAGAGCTGCTGACCAGAAAAGCCCAAGAGAGGCTGTTGAGTTTGTCCTACAACTGTTGAAGTACAATGACAACAATGGGAACTCTTATTCTGATGTGTTCTGGCTTTCTTCATTAATTCAGTCTGTCGGAGAACTTGAATTTGGGCAACAGAGTATTGTCCTTTTATCATCTCTTCTTAAGCGTATTGATCGGCTTTTGCAATTTGACAGGTTGATGCCTAGCTACAATGGTATCTTGTCAGTCAGCTGTATCAGGTCCCTGACACATATTGCCTTGAAACTTATGGGATTTGTTCCTCTTGATCGTGTGTTTGAGCTTGTAAAACCTTTTCGCGATATCAAGGCCATATGGCAAGTTAGGGTTGAAGCAAGCCGAGCACTCCTTGATCTTGAATTCCACTGCAAAGGCATTGATGCAGCTTTGGCATTATTTATGAGATATTTAGATGAAGAGCCATCCTTCAGAGGTCAGATGAAGTTGGCTGTGCATGCTATGAGGTTATGCAAGGTAAGAGGTGGATCTGATTGTGAGGATGAAGTTCAGAGCCAGACTCTTGTGGCTTTACTTCGCCTACTTGAAGGCCAGATGGCATTTAATAATATCTTTCTTCGTCACCACGTATTCTGCATCCTACAAATCCTTGCAGGAAGGCCCCCAACCTTATATGGAGTGCCAAGAGATCATAGACCATTGCTTCTAGGTGATGCAGAAGGCTTACACGTGCAGAAGAACATTTTTGCTTCTTTCATTCCAGAAAGTAAATCTCAGGAACCACCTTCTGACCATGCACATGATGGTGTGTCTGTTCCCGAAACTTCCAGAGATGTTTTGGGTGCTCCAGAAGCTACCATGGATGGGTTGTCCGCTCCAGCCCCAGGAGCTTTTAGAGATGGGTTGTCCATTGCAGCTCCAGAAGCATCCATGGATGGGTTGTCAGTTCCAGCTCCAGAAGCTCTTAGAGATGGGTTGGCCTTTGCAGAAGCTTCCAAGGAAGATTTTGGTGCTTCAGAACCTCCCAATGATGCTTTCATTGGTTTGGGTCCTTTAGAACCTTTCAGTGATGATTTGGTTACAGTGGTAGATCCTTCCGCTGGTGGTTTGGGTGCTGTGGAAACTTCCAAGGATGTCATGGCAGCAGTTCCGGAACCTCCCAAGGATATCTTGATAGTTCCTGAACCTTCCAAGGATATCTTGATAGCTCCTGATCGTTCCATGGATAACTTGGCAGTTCGTGAACCTTCCAAGGAAGCAGATACCATTTCCAACAGTCACAGACGGAAGTTGCCAGTTGTTAAGATCAGGGTAAAAAAATCTGCTACTAATAGCAGAGCAGAAGAAGGCGATAATCAAACTGTTGAGAGATCTCAAGGTGGGCATGCTAGCAGTTCAGTTTCTGTGGATGCACCTCACAGGAATTTCCGAGAAGTTGTGAGCCTTAGCAACCAAAACTTTGAGGAAGTTAACTCTTGTCATGATCTTGGATCTCGGATGACTGCCAGCATCGGTAGTGCAAAATTTGCAAGTGATGCTGATGATAATATAGGAAGGGAATTGCAGTGCACTGCTGATTCAAGCAAAGTTTCTGTACAGCCTCGACCCGATATTTCATCACCTAGCTTCATGCAAGATAACCAAGATGCAGATGTGCAGAAGTACGCAAGCCTTCAGGCTCTTTCAGCTCCGAGGAATGATCTTAATGGTGGTTCTTTTGGCACAATGGATGTACTGCCTCATGGGAAGGAAAAGGAGAGAAAGAAAGACAAGGACAAGAAAAGGAAGCGGGATAAAGGCCATCGAGATGATCCCGAGTATATTGAGCGAAAACGATTAAAGAAGGAGAAAAGGCAGAAAGAGAAGGAGCTGTCGAAGTTGTTGAGTGACAGTGCCAAAGTACCTTCCCTGGACGTACCAAGTAAGGAGGTACTTGGAATGAAGCCTGCAACTTTGCAACTGAAACCAGTTGAGCCCAGTAGATCAAACAAATTAGTCCTCGCAACTGTTGAAGCGACCAGGCCCGAGGCATCAGGAACTAAAACCATCACCCCCAAGATTCGTATTAAAACCAAATTTCGAACTCTGGACAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Peptidase_M1

Protein Analysis

1320

Amino Acids

147.13

Weight (kDa)

6.5

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M1 PF01433 139 - 332 2.8e-13 Peptidase family M1 domain
TAF2_3rd PF25316 362 - 509 2.2e-40 TAF2 Ig-like domain
TPR_TAF2_C PF25577 512 - 813 8.2e-38 TAF2-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 710
AccB7I CCANNNNNTGG 2 cut(s) 1310, 1330
AccBSI CCGCTC 1 cut(s) 2738
AccI GTMKAC 1 cut(s) 1741
AccII CGCG 2 cut(s) 976, 2205
AccIII TCCGGA 2 cut(s) 331, 3013
AciI CCGC 8 cut(s) 53, 106, 245, 446, 739, 2736, 2961, 3652
AclWI GGATC 6 cut(s) 236, 1478, 2398, 2948, 3361, 3668
AcsI RAATTY 9 cut(s) 13, 936, 1058, 1509, 2009, 2264, 3286, 3386, 3938
AcuI CTGAAG 3 cut(s) 2317, 2862, 3521
AcvI CACGTG 1 cut(s) 2593
AdeI CACNNNGTG 1 cut(s) 843
AflII CTTAAG 1 cut(s) 2048
AflIII ACRYGT 3 cut(s) 360, 974, 2590
AjnI CCWGG 5 cut(s) 222, 1243, 2746, 3771, 3881
AjuI GAANNNNNNNTTGG 5 cut(s) 37, 1995, 2027, 2882, 2914
Alw21I GWGCWC 5 cut(s) 292, 1166, 2251, 2710, 3434
Alw26I GTCTC 1 cut(s) 50
Alw44I GTGCAC 2 cut(s) 1162, 3430
AlwI GGATC 6 cut(s) 236, 1478, 2398, 2948, 3361, 3668
AlwNI CAGNNNCTG 5 cut(s) 229, 1214, 1330, 1718, 3266
Ama87I CYCGRG 4 cut(s) 167, 920, 3677, 3887
Aor13HI TCCGGA 2 cut(s) 331, 3013
AoxI GGCC 8 cut(s) 1241, 1665, 2214, 2452, 2522, 2841, 3661, 3884
ApaLI GTGCAC 2 cut(s) 1162, 3430
ApoI RAATTY 9 cut(s) 13, 936, 1058, 1509, 2009, 2264, 3286, 3386, 3938
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
AseI ATTAAT 2 cut(s) 1542, 1985
Asp700I GAANNNNTTC 2 cut(s) 327, 1062
AspLEI GCGC 1 cut(s) 802
AspS9I GGNCC 6 cut(s) 334, 917, 2127, 2523, 2912, 3885
AsuHPI GGTGA 5 cut(s) 1765, 2477, 2585, 3474, 3904
AsuII TTCGAA 2 cut(s) 1681, 3943
AsuNHI GCTAGC 1 cut(s) 3251
AvaI CYCGRG 4 cut(s) 167, 920, 3677, 3887
AvaII GGWCC 4 cut(s) 334, 917, 2127, 2912
BaeGI GKGCMC 2 cut(s) 1166, 3434
BaeI ACNNNNGTAYC 2 cut(s) 2086, 2119
BanII GRGCYC 2 cut(s) 964, 3840
BauI CACGAG 1 cut(s) 589
BbrPI CACGTG 1 cut(s) 2593
Bbv12I GWGCWC 5 cut(s) 292, 1166, 2251, 2710, 3434
BbvCI CCTCAGC 2 cut(s) 1100, 1611
BceAI ACGGC 1 cut(s) 752
BciT130I CCWGG 5 cut(s) 224, 1245, 2748, 3773, 3883
BciVI GTATCC 2 cut(s) 514, 1717
BclI TGATCA 1 cut(s) 574
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 9 cut(s) 272, 443, 683, 1362, 1436, 2091, 2570, 3252, 3486
BfmI CTRYAG 3 cut(s) 265, 399, 1860
BfrI CTTAAG 1 cut(s) 2048
BfuI GTATCC 2 cut(s) 514, 1717
BglII AGATCT 2 cut(s) 986, 3233
BlpI GCTNAGC 1 cut(s) 803
BmcAI AGTACT 1 cut(s) 997
Bme1390I CCNGG 5 cut(s) 224, 1245, 2748, 3773, 3883
Bme18I GGWCC 4 cut(s) 334, 917, 2127, 2912
BmeT110I CYCGRG 4 cut(s) 167, 920, 3677, 3887
BmgT120I GGNCC 6 cut(s) 334, 917, 2127, 2523, 2912, 3885
BmiI GGNNCC 8 cut(s) 125, 918, 919, 2129, 2525, 2643, 2913, 3018
BmrFI CCNGG 5 cut(s) 224, 1245, 2748, 3773, 3883
BmrI ACTGGG 1 cut(s) 3834
BmtI GCTAGC 1 cut(s) 3255
BmuI ACTGGG 1 cut(s) 3834
BoxI GACNNNNGTC 1 cut(s) 922
BplI GAGNNNNNCTC 2 cut(s) 2407, 2439
BpmI CTGGAG 7 cut(s) 1332, 1432, 1693, 2694, 2724, 2766, 2802
Bpu10I CCTNAGC 4 cut(s) 1100, 1575, 1611, 3308
Bpu1102I GCTNAGC 1 cut(s) 803
Bpu14I TTCGAA 2 cut(s) 1681, 3943
BpuEI CTTGAG 6 cut(s) 531, 532, 948, 1058, 1862, 3222
BsaAI YACGTR 3 cut(s) 1157, 2491, 2593
BsaBI GATNNNNATC 1 cut(s) 1256
BsaWI WCCGGW 3 cut(s) 331, 1294, 3013
BsaXI ACNNNNNCTCC 2 cut(s) 1305, 1335
Bse1I ACTGG 6 cut(s) 281, 1094, 1449, 3158, 3830, 3840
Bse3DI GCAATG 4 cut(s) 211, 1599, 2561, 2772
Bse8I GATNNNNATC 1 cut(s) 1256
BseAI TCCGGA 2 cut(s) 331, 3013
BseBI CCWGG 5 cut(s) 224, 1245, 2748, 3773, 3883
BseJI GATNNNNATC 1 cut(s) 1256
BseMI GCAATG 4 cut(s) 211, 1599, 2561, 2772
BseNI ACTGG 6 cut(s) 281, 1094, 1449, 3158, 3830, 3840
BseSI GKGCMC 2 cut(s) 1166, 3434
BseYI CCCAGC 2 cut(s) 686, 1071
BsgI GTGCAG 3 cut(s) 29, 2615, 3539
Bsh1236I CGCG 2 cut(s) 976, 2205
BshFI GGCC 8 cut(s) 1243, 1667, 2216, 2454, 2524, 2843, 3663, 3886
BsiHKAI GWGCWC 5 cut(s) 292, 1166, 2251, 2710, 3434
BsiHKCI CYCGRG 4 cut(s) 167, 920, 3677, 3887
BsiSI CCGG 3 cut(s) 332, 1295, 3014
BslFI GGGAC 2 cut(s) 930, 2113
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 2 cut(s) 930, 2113
BsnI GGCC 8 cut(s) 1243, 1667, 2216, 2454, 2524, 2843, 3663, 3886
BsoBI CYCGRG 4 cut(s) 167, 920, 3677, 3887
Bsp119I TTCGAA 2 cut(s) 1681, 3943
Bsp1286I GDGCHC 7 cut(s) 292, 964, 1166, 2251, 2710, 3434, 3840
Bsp13I TCCGGA 2 cut(s) 331, 3013
Bsp1407I TGTACA 2 cut(s) 1528, 3457
Bsp1720I GCTNAGC 1 cut(s) 803
Bsp19I CCATGG 3 cut(s) 2721, 2793, 3084
Bsp68I TCGCGA 1 cut(s) 2205
BspACI CCGC 8 cut(s) 53, 106, 245, 446, 739, 2736, 2961, 3652
BspANI GGCC 8 cut(s) 1243, 1667, 2216, 2454, 2524, 2843, 3663, 3886
BspEI TCCGGA 2 cut(s) 331, 3013
BspFNI CGCG 2 cut(s) 976, 2205
BspHI TCATGA 2 cut(s) 1267, 3343
BspLI GGNNCC 8 cut(s) 125, 918, 919, 2129, 2525, 2643, 2913, 3018
BspOI GCTAGC 1 cut(s) 3255
BspPI GGATC 6 cut(s) 236, 1478, 2398, 2948, 3361, 3668
BspQI GCTCTTC 1 cut(s) 2316
BspT104I TTCGAA 2 cut(s) 1681, 3943
BspTI CTTAAG 1 cut(s) 2048
BsrBI CCGCTC 1 cut(s) 2738
BsrDI GCAATG 4 cut(s) 211, 1599, 2561, 2772
BsrGI TGTACA 2 cut(s) 1528, 3457
BsrI ACTGG 6 cut(s) 281, 1094, 1449, 3158, 3830, 3840
BssSI CACGAG 1 cut(s) 589
BssT1I CCWWGG 9 cut(s) 1662, 2721, 2793, 2859, 2991, 3024, 3054, 3084, 3114
Bst2BI CACGAG 1 cut(s) 589
Bst2UI CCWGG 5 cut(s) 224, 1245, 2748, 3773, 3883
Bst6I CTCTTC 2 cut(s) 2049, 2316
BstAFI CTTAAG 1 cut(s) 2048
BstAPI GCANNNNNTGC 5 cut(s) 764, 843, 1430, 3389, 3398
BstAUI TGTACA 2 cut(s) 1528, 3457
BstBAI YACGTR 3 cut(s) 1157, 2491, 2593
BstBI TTCGAA 2 cut(s) 1681, 3943
BstDSI CCRYGG 4 cut(s) 412, 2721, 2793, 3084
BstFNI CGCG 2 cut(s) 976, 2205
BstHHI GCGC 1 cut(s) 802
BstMAI GTCTC 1 cut(s) 50
BstNI CCWGG 5 cut(s) 224, 1245, 2748, 3773, 3883
BstNSI RCATGY 4 cut(s) 364, 1859, 2363, 3251
BstPAI GACNNNNGTC 1 cut(s) 922
BstSCI CCNGG 5 cut(s) 222, 1243, 2746, 3771, 3881
BstSFI CTRYAG 3 cut(s) 265, 399, 1860
BstSLI GKGCMC 2 cut(s) 1166, 3434
BstUI CGCG 2 cut(s) 976, 2205
BstX2I RGATCY 6 cut(s) 986, 1483, 2390, 2953, 3233, 3353
BstXI CCANNNNNNTGG 1 cut(s) 344
BstYI RGATCY 6 cut(s) 986, 1483, 2390, 2953, 3233, 3353
BsuI GTATCC 2 cut(s) 514, 1717
BsuRI GGCC 8 cut(s) 1243, 1667, 2216, 2454, 2524, 2843, 3663, 3886
BtgI CCRYGG 4 cut(s) 412, 2721, 2793, 3084
BtsI GCAGTG 4 cut(s) 810, 2269, 3432, 3434
BtuMI TCGCGA 1 cut(s) 2205
CaiI CAGNNNCTG 5 cut(s) 229, 1214, 1330, 1718, 3266
CciI TCATGA 2 cut(s) 1267, 3343
CfoI GCGC 1 cut(s) 802
Cfr13I GGNCC 6 cut(s) 334, 917, 2127, 2523, 2912, 3885
CseI GACGC 3 cut(s) 982, 1031, 1374
CsiI ACCWGGT 1 cut(s) 222
DraIII CACNNNGTG 1 cut(s) 843
Eam1104I CTCTTC 2 cut(s) 2049, 2316
EarI CTCTTC 2 cut(s) 2049, 2316
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 9 cut(s) 1662, 2721, 2793, 2859, 2991, 3024, 3054, 3084, 3114
Eco147I AGGCCT 1 cut(s) 1667
Eco24I GRGCYC 2 cut(s) 964, 3840
Eco32I GATATC 4 cut(s) 300, 2209, 3031, 3061
Eco47I GGWCC 4 cut(s) 334, 917, 2127, 2912
Eco57I CTGAAG 3 cut(s) 2317, 2862, 3521
Eco72I CACGTG 1 cut(s) 2593
Eco88I CYCGRG 4 cut(s) 167, 920, 3677, 3887
EcoO109I RGGNCCY 4 cut(s) 917, 2127, 2523, 2912
EcoRI GAATTC 2 cut(s) 1058, 2264
EcoRII CCWGG 5 cut(s) 222, 1243, 2746, 3771, 3881
EcoRV GATATC 4 cut(s) 300, 2209, 3031, 3061
EcoT14I CCWWGG 9 cut(s) 1662, 2721, 2793, 2859, 2991, 3024, 3054, 3084, 3114
EcoT38I GRGCYC 2 cut(s) 964, 3840
ErhI CCWWGG 9 cut(s) 1662, 2721, 2793, 2859, 2991, 3024, 3054, 3084, 3114
FalI AAGNNNNNCTT 4 cut(s) 3017, 3049, 3047, 3079
FaqI GGGAC 2 cut(s) 930, 2113
FauI CCCGC 2 cut(s) 746, 3645
FauNDI CATATG 2 cut(s) 259, 2219
FbaI TGATCA 1 cut(s) 574
FblI GTMKAC 1 cut(s) 1741
FriOI GRGCYC 2 cut(s) 964, 3840
FspBI CTAG 9 cut(s) 272, 443, 683, 1362, 1436, 2091, 2570, 3252, 3486
GlaI GCGC 1 cut(s) 801
GsaI CCCAGC 2 cut(s) 690, 1075
GsuI CTGGAG 7 cut(s) 1332, 1432, 1693, 2694, 2724, 2766, 2802
HaeIII GGCC 8 cut(s) 1243, 1667, 2216, 2454, 2524, 2843, 3663, 3886
HapII CCGG 3 cut(s) 332, 1295, 3014
HgaI GACGC 3 cut(s) 982, 1031, 1374
HhaI GCGC 1 cut(s) 802
Hin6I GCGC 1 cut(s) 800
HinP1I GCGC 1 cut(s) 800
HincII GTYRAC 1 cut(s) 3334
HindII GTYRAC 1 cut(s) 3334
HindIII AAGCTT 4 cut(s) 211, 386, 1394, 2853
HpaI GTTAAC 1 cut(s) 3334
HpaII CCGG 3 cut(s) 332, 1295, 3014
HphI GGTGA 5 cut(s) 1765, 2477, 2585, 3474, 3904
Hpy166II GTNNAC 8 cut(s) 146, 174, 451, 1164, 1742, 3107, 3334, 3432
Hpy8I GTNNAC 8 cut(s) 146, 174, 451, 1164, 1742, 3107, 3334, 3432
HpyCH4IV ACGT 4 cut(s) 1156, 2490, 2592, 3777
HpySE526I ACGT 4 cut(s) 1156, 2490, 2592, 3777
HspAI GCGC 1 cut(s) 800
KflI GGGWCCC 1 cut(s) 917
Kpn2I TCCGGA 2 cut(s) 331, 3013
Ksp22I TGATCA 1 cut(s) 574
KspAI GTTAAC 1 cut(s) 3334
LguI GCTCTTC 1 cut(s) 2316
MabI ACCWGGT 1 cut(s) 222
MaeI CTAG 9 cut(s) 272, 443, 683, 1362, 1436, 2091, 2570, 3252, 3486
MaeII ACGT 4 cut(s) 1156, 2490, 2592, 3777
MaeIII GTNAC 7 cut(s) 428, 1223, 1753, 2483, 2941, 3140, 3749
MbiI CCGCTC 1 cut(s) 2738
MboII GAAGA 8 cut(s) 577, 1971, 2036, 2333, 2471, 2611, 2876, 3218
MfeI CAATTG 1 cut(s) 1587
MflI RGATCY 6 cut(s) 986, 1483, 2390, 2953, 3233, 3353
MhlI GDGCHC 7 cut(s) 292, 964, 1166, 2251, 2710, 3434, 3840
MluI ACGCGT 1 cut(s) 974
MlyI GAGTC 4 cut(s) 932, 1652, 1788, 2416
MmeI TCCRAC 5 cut(s) 882, 1155, 1530, 1978, 3159
MroI TCCGGA 2 cut(s) 331, 3013
MroXI GAANNNNTTC 2 cut(s) 327, 1062
MslI CAYNNNNRTG 4 cut(s) 1169, 2661, 2667, 3669
MspA1I CMGCKG 3 cut(s) 1327, 2118, 2963
MspCI CTTAAG 1 cut(s) 2048
MspI CCGG 3 cut(s) 332, 1295, 3014
MspR9I CCNGG 5 cut(s) 224, 1245, 2748, 3773, 3883
MunI CAATTG 1 cut(s) 1587
MvaI CCWGG 5 cut(s) 224, 1245, 2748, 3773, 3883
MvnI CGCG 2 cut(s) 976, 2205
NcoI CCATGG 3 cut(s) 2721, 2793, 3084
NdeI CATATG 2 cut(s) 259, 2219
NheI GCTAGC 1 cut(s) 3251
NlaIV GGNNCC 8 cut(s) 125, 918, 919, 2129, 2525, 2643, 2913, 3018
NmeAIII GCCGAG 1 cut(s) 2270
NmuCI GTSAC 5 cut(s) 1223, 1753, 2483, 3140, 3749
NruI TCGCGA 1 cut(s) 2205
NspI RCATGY 4 cut(s) 364, 1859, 2363, 3251
NspV TTCGAA 2 cut(s) 1681, 3943
PaeI GCATGC 2 cut(s) 2363, 3251
PaeR7I CTCGAG 1 cut(s) 167
PagI TCATGA 2 cut(s) 1267, 3343
PceI AGGCCT 1 cut(s) 1667
PciI ACATGT 1 cut(s) 360
PciSI GCTCTTC 1 cut(s) 2316
PdmI GAANNNNTTC 2 cut(s) 327, 1062
PfeI GAWTC 7 cut(s) 187, 1178, 1211, 1457, 1601, 3440, 3922
PflMI CCANNNNNTGG 2 cut(s) 1310, 1330
PleI GAGTC 4 cut(s) 931, 1652, 1788, 2416
PmaCI CACGTG 1 cut(s) 2593
PmlI CACGTG 1 cut(s) 2593
PpsI GAGTC 4 cut(s) 931, 1652, 1788, 2416
Ppu21I YACGTR 3 cut(s) 1157, 2491, 2593
PpuMI RGGWCCY 3 cut(s) 917, 2127, 2912
PscI ACATGT 1 cut(s) 360
PshAI GACNNNNGTC 1 cut(s) 922
PshBI ATTAAT 2 cut(s) 1542, 1985
PsiI TTATAA 1 cut(s) 710
Psp5II RGGWCCY 3 cut(s) 917, 2127, 2912
Psp6I CCWGG 5 cut(s) 222, 1243, 2746, 3771, 3881
PspCI CACGTG 1 cut(s) 2593
PspFI CCCAGC 2 cut(s) 686, 1071
PspGI CCWGG 5 cut(s) 222, 1243, 2746, 3771, 3881
PspN4I GGNNCC 8 cut(s) 125, 918, 919, 2129, 2525, 2643, 2913, 3018
PspPI GGNCC 6 cut(s) 334, 917, 2127, 2523, 2912, 3885
PspPPI RGGWCCY 3 cut(s) 917, 2127, 2912
PstNI CAGNNNCTG 5 cut(s) 229, 1214, 1330, 1718, 3266
PsuI RGATCY 6 cut(s) 986, 1483, 2390, 2953, 3233, 3353
PvuII CAGCTG 2 cut(s) 1327, 2118
RruI TCGCGA 1 cut(s) 2205
RseI CAYNNNNRTG 4 cut(s) 1169, 2661, 2667, 3669
SapI GCTCTTC 1 cut(s) 2316
Sau96I GGNCC 6 cut(s) 334, 917, 2127, 2523, 2912, 3885
ScaI AGTACT 1 cut(s) 997
SchI GAGTC 4 cut(s) 932, 1652, 1788, 2416
ScrFI CCNGG 5 cut(s) 224, 1245, 2748, 3773, 3883
SduI GDGCHC 7 cut(s) 292, 964, 1166, 2251, 2710, 3434, 3840
SexAI ACCWGGT 1 cut(s) 222
SfcI CTRYAG 3 cut(s) 265, 399, 1860
Sfr274I CTCGAG 1 cut(s) 167
SfuI TTCGAA 2 cut(s) 1681, 3943
SinI GGWCC 4 cut(s) 334, 917, 2127, 2912
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 4 cut(s) 1169, 2661, 2667, 3669
SmlI CTYRAG 8 cut(s) 167, 511, 546, 963, 1037, 1841, 2048, 3237
SmoI CTYRAG 8 cut(s) 167, 511, 546, 963, 1037, 1841, 2048, 3237
SphI GCATGC 2 cut(s) 2363, 3251
SseBI AGGCCT 1 cut(s) 1667
SsiI CCGC 8 cut(s) 53, 106, 245, 446, 739, 2736, 2961, 3652
SspMI CTAG 9 cut(s) 272, 443, 683, 1362, 1436, 2091, 2570, 3252, 3486
StuI AGGCCT 1 cut(s) 1667
StyD4I CCNGG 5 cut(s) 222, 1243, 2746, 3771, 3881
StyI CCWWGG 9 cut(s) 1662, 2721, 2793, 2859, 2991, 3024, 3054, 3084, 3114
TaiI ACGT 4 cut(s) 1159, 2493, 2595, 3780
TaqI TCGA 8 cut(s) 168, 956, 1681, 1771, 3466, 3667, 3737, 3943
TatI WGTACW 5 cut(s) 995, 1528, 1932, 3457, 3595
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 7 cut(s) 187, 1178, 1211, 1457, 1601, 3440, 3922
TseFI GTSAC 5 cut(s) 1223, 1753, 2483, 3140, 3749
Tsp45I GTSAC 5 cut(s) 1223, 1753, 2483, 3140, 3749
TspGWI ACGGA 5 cut(s) 199, 920, 1452, 1742, 3163
Van91I CCANNNNNTGG 2 cut(s) 1310, 1330
Vha464I CTTAAG 1 cut(s) 2048
VneI GTGCAC 2 cut(s) 1162, 3430
VpaK11BI GGWCC 4 cut(s) 334, 917, 2127, 2912
VspI ATTAAT 2 cut(s) 1542, 1985
XapI RAATTY 9 cut(s) 13, 936, 1058, 1509, 2009, 2264, 3286, 3386, 3938
XceI RCATGY 4 cut(s) 364, 1859, 2363, 3251
XcmI CCANNNNNNNNNTGG 4 cut(s) 2663, 2698, 2998, 3091
XhoI CTCGAG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 1741
XmnI GAANNNNTTC 2 cut(s) 327, 1062
XspI CTAG 9 cut(s) 272, 443, 683, 1362, 1436, 2091, 2570, 3252, 3486
ZrmI AGTACT 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.