Transcription initiation factor TFIID
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73960 AT1G73960 |
| fragaria_vesca | FvH4_5g12730 |
| malus_domestica | MD06G1210800.v1.1 MD06G1211000.v1.1 MD14G1221500.v1.1 MD14G1221600.v1.1 |
| prunus_persica | Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 |
| pyrus_communis | pycom06g18830 pycom14g18330 |
| rosa_chinensis | RchiOBHm_Chr7g0184581 |
| rosa_laevigata | RLG00000003716 RLG00000004966 RLG00000020303 |
| rosa_multiflora | Rmu_ssc0000289.1_g000035 |
| rosa_roxburghii | Rroxscaffold_3G00269500 Rroxscaffold_7G00196400 |
| rosa_rugosa | Rorug06G0007300 Rorug07G0060900 |
| rosa_samantha | Rh2BG075800 Rh2CG077900 Rh5DG337600 Rh5DG495400 Rh6AG042200 Rh6AG254600 Rh7AG079100 Rh7BG068200 Rh7BG189600 Rh7CG069000 Rh7DG068300 Rh7DG191200 Rh7DG191900 |
| rosa_wichuraiana | Rw7G005620 Rw7G016350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 120 |
| AclWI | GGATC | 1 cut(s) | 319 |
| AcsI | RAATTY | 1 cut(s) | 182 |
| AcuI | CTGAAG | 1 cut(s) | 235 |
| AgsI | TTSAA | 6 cut(s) | 64, 101, 152, 182, 371, 497 |
| AluBI | AGCT | 4 cut(s) | 9, 33, 209, 500 |
| AluI | AGCT | 4 cut(s) | 9, 33, 209, 500 |
| Alw21I | GWGCWC | 1 cut(s) | 166 |
| AlwI | GGATC | 1 cut(s) | 319 |
| AoxI | GGCC | 3 cut(s) | 129, 373, 443 |
| ApeKI | GCWGC | 3 cut(s) | 206, 272, 458 |
| ApoI | RAATTY | 1 cut(s) | 182 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 68 |
| AspS9I | GGNCC | 2 cut(s) | 42, 444 |
| AsuHPI | GGTGA | 2 cut(s) | 274, 398 |
| AvaII | GGWCC | 1 cut(s) | 42 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 34 |
| Bbv12I | GWGCWC | 1 cut(s) | 166 |
| BbvI | GCAGC | 3 cut(s) | 218, 259, 445 |
| BccI | CCATC | 2 cut(s) | 253, 373 |
| BfaI | CTAG | 1 cut(s) | 6 |
| BfmI | CTRYAG | 2 cut(s) | 273, 480 |
| BisI | GCNGC | 3 cut(s) | 207, 273, 459 |
| BlsI | GCNGC | 3 cut(s) | 208, 274, 460 |
| Bme18I | GGWCC | 1 cut(s) | 42 |
| BmgT120I | GGNCC | 2 cut(s) | 42, 444 |
| BmiI | GGNNCC | 1 cut(s) | 44 |
| BmsI | GCATC | 1 cut(s) | 193 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 153, 185 |
| BsaAI | YACGTR | 1 cut(s) | 412 |
| BseGI | GGATG | 2 cut(s) | 245, 331 |
| BseXI | GCAGC | 3 cut(s) | 218, 259, 445 |
| Bsh1236I | CGCG | 1 cut(s) | 120 |
| BshFI | GGCC | 3 cut(s) | 131, 375, 445 |
| BsiHKAI | GWGCWC | 1 cut(s) | 166 |
| BslFI | GGGAC | 1 cut(s) | 28 |
| BsmFI | GGGAC | 1 cut(s) | 28 |
| BsmI | GAATGC | 1 cut(s) | 420 |
| BsnI | GGCC | 3 cut(s) | 131, 375, 445 |
| Bsp1286I | GDGCHC | 1 cut(s) | 166 |
| Bsp143I | GATC | 3 cut(s) | 88, 175, 311 |
| Bsp68I | TCGCGA | 1 cut(s) | 120 |
| BspANI | GGCC | 3 cut(s) | 131, 375, 445 |
| BspFNI | CGCG | 1 cut(s) | 120 |
| BspLI | GGNNCC | 1 cut(s) | 44 |
| BspMAI | CTGCAG | 1 cut(s) | 277 |
| BspPI | GGATC | 1 cut(s) | 319 |
| BspQI | GCTCTTC | 1 cut(s) | 234 |
| BssMI | GATC | 3 cut(s) | 88, 175, 311 |
| Bst6I | CTCTTC | 1 cut(s) | 234 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 281 |
| BstBAI | YACGTR | 1 cut(s) | 412 |
| BstC8I | GCNNGC | 2 cut(s) | 157, 282 |
| BstF5I | GGATG | 2 cut(s) | 245, 331 |
| BstFNI | CGCG | 1 cut(s) | 120 |
| BstKTI | GATC | 3 cut(s) | 91, 178, 314 |
| BstMBI | GATC | 3 cut(s) | 88, 175, 311 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 161, 212, 281 |
| BstSFI | CTRYAG | 2 cut(s) | 273, 480 |
| BstUI | CGCG | 1 cut(s) | 120 |
| BstV1I | GCAGC | 3 cut(s) | 218, 259, 445 |
| BstX2I | RGATCY | 1 cut(s) | 311 |
| BstYI | RGATCY | 1 cut(s) | 311 |
| BsuRI | GGCC | 3 cut(s) | 131, 375, 445 |
| BtsCI | GGATG | 2 cut(s) | 245, 331 |
| BtsI | GCAGTG | 2 cut(s) | 187, 282 |
| BtsIMutI | CAGTG | 2 cut(s) | 187, 282 |
| BtuMI | TCGCGA | 1 cut(s) | 120 |
| Cac8I | GCNNGC | 2 cut(s) | 157, 282 |
| Cfr13I | GGNCC | 2 cut(s) | 42, 444 |
| DpnI | GATC | 3 cut(s) | 90, 177, 313 |
| DpnII | GATC | 3 cut(s) | 88, 175, 311 |
| Eam1104I | CTCTTC | 1 cut(s) | 234 |
| EarI | CTCTTC | 1 cut(s) | 234 |
| Eco32I | GATATC | 1 cut(s) | 124 |
| Eco47I | GGWCC | 1 cut(s) | 42 |
| Eco57I | CTGAAG | 1 cut(s) | 235 |
| EcoO109I | RGGNCCY | 1 cut(s) | 42 |
| EcoRI | GAATTC | 1 cut(s) | 182 |
| EcoRV | GATATC | 1 cut(s) | 124 |
| FaiI | YATR | 8 cut(s) | 54, 134, 136, 224, 287, 295, 466, 505 |
| FaqI | GGGAC | 1 cut(s) | 28 |
| FauNDI | CATATG | 1 cut(s) | 134 |
| Fnu4HI | GCNGC | 3 cut(s) | 207, 273, 459 |
| FokI | GGATG | 2 cut(s) | 232, 338 |
| Fsp4HI | GCNGC | 3 cut(s) | 207, 273, 459 |
| FspBI | CTAG | 1 cut(s) | 6 |
| GluI | GCNGC | 3 cut(s) | 207, 273, 459 |
| HaeIII | GGCC | 3 cut(s) | 131, 375, 445 |
| HinfI | GANTC | 1 cut(s) | 343 |
| HphI | GGTGA | 2 cut(s) | 274, 398 |
| Hpy188I | TCNGA | 4 cut(s) | 74, 254, 316, 336 |
| Hpy188III | TCNNGA | 3 cut(s) | 86, 119, 179 |
| HpyAV | CCTTC | 4 cut(s) | 259, 365, 435, 485 |
| HpyCH4IV | ACGT | 1 cut(s) | 411 |
| HpyCH4V | TGCA | 6 cut(s) | 192, 206, 275, 297, 420, 437 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 161, 212, 281 |
| HpySE526I | ACGT | 1 cut(s) | 411 |
| Kzo9I | GATC | 3 cut(s) | 88, 175, 311 |
| LguI | GCTCTTC | 1 cut(s) | 234 |
| LpnPI | CCDG | 6 cut(s) | 25, 59, 245, 353, 389, 423 |
| Lsp1109I | GCAGC | 3 cut(s) | 218, 259, 445 |
| LweI | GCATC | 1 cut(s) | 193 |
| MaeI | CTAG | 1 cut(s) | 6 |
| MaeII | ACGT | 1 cut(s) | 411 |
| MaeIII | GTNAC | 1 cut(s) | 404 |
| MalI | GATC | 3 cut(s) | 90, 177, 313 |
| MboI | GATC | 3 cut(s) | 88, 175, 311 |
| MboII | GAAGA | 3 cut(s) | 251, 392, 485 |
| MflI | RGATCY | 1 cut(s) | 311 |
| MhlI | GDGCHC | 1 cut(s) | 166 |
| MluCI | AATT | 1 cut(s) | 182 |
| MnlI | CCTC | 6 cut(s) | 93, 248, 282, 299, 316, 478 |
| MroXI | GAANNNNTTC | 1 cut(s) | 68 |
| MseI | TTAA | 2 cut(s) | 387, 453 |
| MspA1I | CMGCKG | 1 cut(s) | 33 |
| Mva1269I | GAATGC | 1 cut(s) | 420 |
| MvnI | CGCG | 1 cut(s) | 120 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 161, 212, 281 |
| NdeI | CATATG | 1 cut(s) | 134 |
| NdeII | GATC | 3 cut(s) | 88, 175, 311 |
| NlaIV | GGNNCC | 1 cut(s) | 44 |
| NmuCI | GTSAC | 1 cut(s) | 404 |
| NruI | TCGCGA | 1 cut(s) | 120 |
| PciSI | GCTCTTC | 1 cut(s) | 234 |
| PctI | GAATGC | 1 cut(s) | 420 |
| PdmI | GAANNNNTTC | 1 cut(s) | 68 |
| PfeI | GAWTC | 1 cut(s) | 343 |
| PkrI | GCNGC | 3 cut(s) | 208, 274, 460 |
| Ppu21I | YACGTR | 1 cut(s) | 412 |
| PpuMI | RGGWCCY | 1 cut(s) | 42 |
| Psp5II | RGGWCCY | 1 cut(s) | 42 |
| PspN4I | GGNNCC | 1 cut(s) | 44 |
| PspPI | GGNCC | 2 cut(s) | 42, 444 |
| PspPPI | RGGWCCY | 1 cut(s) | 42 |
| PstI | CTGCAG | 1 cut(s) | 277 |
| PsuI | RGATCY | 1 cut(s) | 311 |
| PvuII | CAGCTG | 1 cut(s) | 33 |
| RruI | TCGCGA | 1 cut(s) | 120 |
| SapI | GCTCTTC | 1 cut(s) | 234 |
| SaqAI | TTAA | 2 cut(s) | 387, 453 |
| SatI | GCNGC | 3 cut(s) | 207, 273, 459 |
| Sau3AI | GATC | 3 cut(s) | 88, 175, 311 |
| Sau96I | GGNCC | 2 cut(s) | 42, 444 |
| SduI | GDGCHC | 1 cut(s) | 166 |
| SfaNI | GCATC | 1 cut(s) | 193 |
| SfcI | CTRYAG | 2 cut(s) | 273, 480 |
| SinI | GGWCC | 1 cut(s) | 42 |
| Sse9I | AATT | 1 cut(s) | 182 |
| SspMI | CTAG | 1 cut(s) | 6 |
| TaiI | ACGT | 1 cut(s) | 414 |
| TasI | AATT | 1 cut(s) | 182 |
| TfiI | GAWTC | 1 cut(s) | 343 |
| Tru1I | TTAA | 2 cut(s) | 387, 453 |
| Tru9I | TTAA | 2 cut(s) | 387, 453 |
| TscAI | CASTG | 2 cut(s) | 194, 282 |
| TseFI | GTSAC | 1 cut(s) | 404 |
| TseI | GCWGC | 3 cut(s) | 206, 272, 458 |
| Tsp45I | GTSAC | 1 cut(s) | 404 |
| TspDTI | ATGAA | 2 cut(s) | 252, 342 |
| TspRI | CASTG | 2 cut(s) | 194, 282 |
| VpaK11BI | GGWCC | 1 cut(s) | 42 |
| XapI | RAATTY | 1 cut(s) | 182 |
| XmnI | GAANNNNTTC | 1 cut(s) | 68 |
| XspI | CTAG | 1 cut(s) | 6 |