RLG00000003716

Transcription initiation factor TFIID

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003127
Physical Location & Seq
Reverse (-)
51990098 .. 51992611
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003716

Sequence Viewer

Length: 468 bp
ATGAGCATCAGAGGCAATACTTTCGGCAAATACATCTACAAGAGGGGCAGAGCTTTTGTGTATAGTGTTGGGGTTGCTGGGAAGAGTTTAGGCCGGAAAATCATGGGTAAGGCAATGTTTGAAATGCAGGCTACTGAAGGAGAACCATCACTGCCCTGGGATGTATCTAGTCACATTTTTGATCTTGGATTGAATACCTTGTTGAAATTCATTTTAATCAACCTGTACAGGTGGATTAATCAGTTGGAGAAGGACAAAGATGTTGTTGCTCAGGCACAAGCAATTGCAATGCTTGAGTCCTTACCTCAGCTTCCATTTTGTGTTGTTACTGCTCTGCATAACTTTCTTATTGACTCCAAGGCCTTCTCAAGAGTTCGAATTGAGGCAGCCTTTGGATTGGCTAATACATCATCTGAGAACCGGGCTGATGTGGTTTTTGATCCCAGATTGGTCAAGGTTGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Peptidase_M1

Protein Analysis

156

Amino Acids

17.29

Weight (kDa)

9.48

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TAF2_C PF25577 76 - 137 6.9e-08 TAF2-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 434
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 1 cut(s) 227
AgsI TTSAA 3 cut(s) 122, 193, 205
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 2 cut(s) 53, 310
AluI AGCT 2 cut(s) 53, 310
AlwI GGATC 1 cut(s) 434
AoxI GGCC 2 cut(s) 91, 360
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 206
AseI ATTAAT 1 cut(s) 237
AsuC2I CCSGG 1 cut(s) 422
AsuII TTCGAA 1 cut(s) 376
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 398
BccI CCATC 1 cut(s) 154
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 1 cut(s) 422
BfaI CTAG 1 cut(s) 168
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 2 cut(s) 157, 422
BmrFI CCNGG 2 cut(s) 157, 422
BmsI GCATC 1 cut(s) 15
Bpu10I CCTNAGC 2 cut(s) 270, 306
Bpu14I TTCGAA 1 cut(s) 376
BpuEI CTTGAG 2 cut(s) 314, 352
BpuMI CCSGG 1 cut(s) 422
BsaJI CCNNGG 3 cut(s) 155, 156, 357
Bse3DI GCAATG 2 cut(s) 120, 294
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 3 cut(s) 155, 156, 357
BseGI GGATG 1 cut(s) 166
BseMI GCAATG 2 cut(s) 120, 294
BseMII CTCAG 3 cut(s) 284, 320, 405
BseXI GCAGC 1 cut(s) 398
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 2 cut(s) 93, 362
BsiSI CCGG 2 cut(s) 94, 421
BsnI GGCC 2 cut(s) 93, 362
Bsp119I TTCGAA 1 cut(s) 376
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 2 cut(s) 181, 439
BspANI GGCC 2 cut(s) 93, 362
BspCNI CTCAG 3 cut(s) 283, 319, 406
BspPI GGATC 1 cut(s) 434
BspT104I TTCGAA 1 cut(s) 376
BsrDI GCAATG 2 cut(s) 120, 294
BsrGI TGTACA 1 cut(s) 225
BssECI CCNNGG 3 cut(s) 155, 156, 357
BssMI GATC 2 cut(s) 181, 439
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 225
BstBI TTCGAA 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 3 cut(s) 270, 306, 414
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 2 cut(s) 184, 442
BstMBI GATC 2 cut(s) 181, 439
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 2 cut(s) 155, 420
BstV1I GCAGC 1 cut(s) 398
BsuRI GGCC 2 cut(s) 93, 362
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 103
CviJI RGCY 8 cut(s) 53, 93, 131, 310, 362, 389, 401, 425
CviKI_1 RGCY 8 cut(s) 53, 93, 131, 310, 362, 389, 401, 425
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 3 cut(s) 270, 306, 414
DpnI GATC 2 cut(s) 183, 441
DpnII GATC 2 cut(s) 181, 439
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 1 cut(s) 106
FaiI YATR 3 cut(s) 63, 104, 339
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 1 cut(s) 168
GluI GCNGC 1 cut(s) 387
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 2 cut(s) 93, 362
HapII CCGG 2 cut(s) 94, 421
Hin1II CATG 1 cut(s) 106
HinfI GANTC 2 cut(s) 296, 353
HpaII CCGG 2 cut(s) 94, 421
Hpy188I TCNGA 2 cut(s) 11, 415
Hpy188III TCNNGA 2 cut(s) 369, 465
HpyAV CCTTC 3 cut(s) 131, 244, 373
HpyCH4V TGCA 4 cut(s) 127, 287, 337, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 3 cut(s) 270, 306, 414
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 2 cut(s) 181, 439
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 170, 325
MalI GATC 2 cut(s) 183, 441
MboI GATC 2 cut(s) 181, 439
MboII GAAGA 1 cut(s) 94
MfeI CAATTG 1 cut(s) 282
MluCI AATT 3 cut(s) 206, 282, 378
MlyI GAGTC 2 cut(s) 305, 347
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 4 cut(s) 5, 36, 315, 376
MseI TTAA 2 cut(s) 215, 237
MspI CCGG 2 cut(s) 94, 421
MspR9I CCNGG 2 cut(s) 157, 422
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 422
NdeII GATC 2 cut(s) 181, 439
NlaIII CATG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 170
NspV TTCGAA 1 cut(s) 376
PasI CCCWGGG 1 cut(s) 156
PceI AGGCCT 1 cut(s) 362
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 2 cut(s) 304, 347
PpsI GAGTC 2 cut(s) 304, 347
PshBI ATTAAT 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 1 cut(s) 155
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 215, 237
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 2 cut(s) 181, 439
SchI GAGTC 2 cut(s) 305, 347
ScrFI CCNGG 2 cut(s) 157, 422
SetI ASST 7 cut(s) 55, 200, 225, 233, 307, 312, 459
SfaNI GCATC 1 cut(s) 15
SfuI TTCGAA 1 cut(s) 376
SmlI CTYRAG 2 cut(s) 293, 367
SmoI CTYRAG 2 cut(s) 293, 367
Sse9I AATT 3 cut(s) 206, 282, 378
SseBI AGGCCT 1 cut(s) 362
SspMI CTAG 1 cut(s) 168
StuI AGGCCT 1 cut(s) 362
StyD4I CCNGG 2 cut(s) 155, 420
StyI CCWWGG 1 cut(s) 357
TaqI TCGA 1 cut(s) 376
TasI AATT 3 cut(s) 206, 282, 378
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 2 cut(s) 215, 237
Tru9I TTAA 2 cut(s) 215, 237
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 199
TspRI CASTG 1 cut(s) 156
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 1 cut(s) 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 153
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.