Rh5DG495400

Transcription initiation factor TFIID

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003127
Physical Location & Seq
Reverse (-)
77698592 .. 77699907
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG495400.1

Sequence Viewer

Length: 207 bp
ATGCAGAGTATTGTCCTTTTATCATCTCTACTTAAGCGTATTGATCGGCTTATGTTTTCTTTAATTTATGTTTTCTTTGGAAATGGATGTACCAGGTTGATGCCTAGCTACAATGGTATCTTGTCAGTCAGCTGTATCAGGTCCCTGACACATATTGCCTTGAAACTTTTGGGATTTGTTCCTCTTGATCGTGTGTTTGAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Peptidase_M1

Protein Analysis

68

Amino Acids

7.72

Weight (kDa)

9.69

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 91
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 163, 200
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 2 cut(s) 108, 132
AluI AGCT 2 cut(s) 108, 132
AspS9I GGNCC 1 cut(s) 141
AvaII GGWCC 1 cut(s) 141
BaeI ACNNNNGTAYC 2 cut(s) 100, 133
BciT130I CCWGG 1 cut(s) 94
BfaI CTAG 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 90
BseBI CCWGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 43, 187
BspLI GGNNCC 1 cut(s) 143
BspTI CTTAAG 1 cut(s) 32
BssMI GATC 2 cut(s) 43, 187
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 204
BstAFI CTTAAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 92
BstKTI GATC 2 cut(s) 46, 190
BstMBI GATC 2 cut(s) 43, 187
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BtsCI GGATG 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 141
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 1 cut(s) 90
CviJI RGCY 3 cut(s) 49, 108, 132
CviKI_1 RGCY 3 cut(s) 49, 108, 132
CviQI GTAC 1 cut(s) 90
DpnI GATC 2 cut(s) 45, 189
DpnII GATC 2 cut(s) 43, 187
Eco47I GGWCC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 92
FaiI YATR 3 cut(s) 53, 69, 153
FaqI GGGAC 1 cut(s) 127
FokI GGATG 1 cut(s) 99
FspBI CTAG 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4V TGCA 1 cut(s) 4
Kzo9I GATC 2 cut(s) 43, 187
LpnPI CCDG 4 cut(s) 79, 106, 124, 158
LweI GCATC 1 cut(s) 90
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 1 cut(s) 105
MalI GATC 2 cut(s) 45, 189
MboI GATC 2 cut(s) 43, 187
MluCI AATT 1 cut(s) 63
MnlI CCTC 1 cut(s) 192
MseI TTAA 2 cut(s) 33, 62
MspA1I CMGCKG 1 cut(s) 132
MspCI CTTAAG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
NdeII GATC 2 cut(s) 43, 187
NlaIV GGNNCC 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 141
PspPPI RGGWCCY 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 132
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 33, 62
Sau3AI GATC 2 cut(s) 43, 187
Sau96I GGNCC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 94
SetI ASST 4 cut(s) 98, 110, 134, 143
SexAI ACCWGGT 1 cut(s) 92
SfaNI GCATC 1 cut(s) 90
SgeI CNNG 9 cut(s) 105, 106, 117, 133, 151, 157, 172, 197, 203
SinI GGWCC 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 1 cut(s) 63
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 204
TasI AATT 1 cut(s) 63
Tru1I TTAA 2 cut(s) 33, 62
Tru9I TTAA 2 cut(s) 33, 62
Vha464I CTTAAG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 141
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.