MD14G1221600.v1.1

Transcription initiation factor TFIID

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
30318033 .. 30321126
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1221600.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGAGGTGCAGCATTCTTCTGGAGAAGTCAAGCAGGAAACGATCAGTTGGCGTGAATGCGAGGTTAGTTCGTATTGATTATTGGGTAGAAAAAGCAGAGACAGGAATTTATTTTCATGATGCTGTTCTACATACTGATAACCAGATACGGCGTGCACGGTGCTGGTTCCCTTGTAAAGATGACAATTCACAAAGTTCTATGATCTGGAGTTCACCGTTGCACAAAATCTTGTGGCTGTTAGCACTGGCAGCTTACTATACCAGGCCCCCAACGCTATATGGAGTGCCAAAAGATCATAAACCATTTCATTTAGGTGAAGCGGAAAGCTTCCGAGAGCAGAAAAACATCTTTGCCGCTTTCATCCCAGAAAGTAAATATGTGGAACCACCTTCCGAAGCTCCAAACCTTTCTCATGGTGATTTAACTGTTCCTGAAACTTCCAGCGATGGGTTTGCCTTTCCAGCAGCTTCCAAGGATGATTTGGGTGCTCCAGAACCTACAACCGATGGTTTTGGTGCTCCAGAACTTCCCAGTGGTGGTCTTGGTGATCCAGAACCTTCTGGTAGTGGTTTGGTCGCTGAAGAACCTTCCATTGGTGGTTTTGCTGCTCCAGAACCTCGGATTGGTAGTTTTGATGGCTTAGCGGTTTCAGAACCTTCCATTGTGAGCCCTAGCAATCAAAATCTCGAGGAAGTAAACTCTTGGCATGATCTTGGATCCCGGATGACTGCCAGCATTGGTTGCGCAAAACTTGCTAGTGATGTGGATGATACAGGAAAGGAATTACAATGCACTGCCGATTCAAGCAAAGTTTCTGCGCTGCCTCGGCCCGAAGATCCATCACCTAGCTTTATCCAAGATAACCGAGATGCAGAAGTACAGAAGCATGCAGGTGTCCAAGCTCTTTCAGTTCCTAGGAACGATGTTATTGGTGGTTCATCCGGAATGTCGGATTCTCTTCCTCGCGGGAAAGAAAAGGAGAAAAAGAAAGACGAGAAACGAAAGAGGGATGGCCATAAGGGCCACCGAGATGATCCTGAGTATTTGGAGCGGAAGCGTATAAAGAAGGTGAAGAAGCCGAAGGAGAAAGAAATGGCGAAGCTGTTGAATGAGCGCGCGAAAGTACCTTCCGCGGAGTTACCAAGTCCGCAACTGTGCAACTCAAACCGGTCGAGCCCAGTGGATCCAACAAGTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

399

Amino Acids

43.53

Weight (kDa)

6.11

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 881
Acc16I TGCGCA 1 cut(s) 745
Acc36I ACCTGC 1 cut(s) 881
AccBSI CCGCTC 1 cut(s) 1051
AccII CGCG 4 cut(s) 966, 1116, 1118, 1133
AccIII TCCGGA 1 cut(s) 941
AciI CCGC 8 cut(s) 320, 354, 644, 966, 1051, 1131, 1133, 1148
AclWI GGATC 7 cut(s) 542, 711, 724, 830, 1028, 1178, 1191
AcoI YGGCCR 1 cut(s) 1012
AcsI RAATTY 1 cut(s) 105
AcuI CTGAAG 1 cut(s) 600
AfaI GTAC 2 cut(s) 879, 1125
AfiI CCNNNNNNNGG 4 cut(s) 447, 536, 593, 623
AgeI ACCGGT 1 cut(s) 1167
AgsI TTSAA 2 cut(s) 804, 1108
AjnI CCWGG 1 cut(s) 260
AjuI GAANNNNNNNTTGG 4 cut(s) 576, 606, 608, 638
AluBI AGCT 7 cut(s) 251, 327, 398, 467, 849, 902, 1102
AluI AGCT 7 cut(s) 251, 327, 398, 467, 849, 902, 1102
Alw21I GWGCWC 3 cut(s) 157, 490, 520
Alw26I GTCTC 1 cut(s) 92
Alw44I GTGCAC 1 cut(s) 153
AlwI GGATC 7 cut(s) 542, 711, 724, 830, 1028, 1178, 1191
Ama87I CYCGRG 1 cut(s) 686
Aor13HI TCCGGA 1 cut(s) 941
AoxI GGCC 4 cut(s) 263, 827, 1012, 1021
ApaLI GTGCAC 1 cut(s) 153
ApeKI GCWGC 5 cut(s) 9, 248, 464, 605, 820
ApoI RAATTY 1 cut(s) 105
AsiGI ACCGGT 1 cut(s) 1167
AspA2I CCTAGG 1 cut(s) 914
AspLEI GCGC 4 cut(s) 746, 820, 1116, 1118
AspS9I GGNCC 3 cut(s) 264, 828, 1021
AsuC2I CCSGG 1 cut(s) 721
AsuHPI GGTGA 6 cut(s) 204, 326, 428, 557, 834, 1081
AvaI CYCGRG 1 cut(s) 686
AvrII CCTAGG 1 cut(s) 914
BaeGI GKGCMC 1 cut(s) 157
BalI TGGCCA 1 cut(s) 1014
BamHI GGATCC 2 cut(s) 716, 1183
BanII GRGCYC 2 cut(s) 671, 1178
Bbv12I GWGCWC 3 cut(s) 157, 490, 520
BbvI GCAGC 5 cut(s) 21, 260, 476, 592, 807
BccI CCATC 5 cut(s) 440, 500, 629, 847, 1004
BceAI ACGGC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BciT130I CCWGG 1 cut(s) 262
BcnI CCSGG 1 cut(s) 721
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 4 cut(s) 672, 756, 846, 915
BfuAI ACCTGC 1 cut(s) 881
BglI GCCNNNNNGGC 1 cut(s) 1020
BisI GCNGC 6 cut(s) 10, 249, 354, 465, 606, 821
BlnI CCTAGG 1 cut(s) 914
BlpI GCTNAGC 1 cut(s) 640
BlsI GCNGC 6 cut(s) 11, 250, 355, 466, 607, 822
Bme1390I CCNGG 2 cut(s) 262, 721
BmeT110I CYCGRG 1 cut(s) 686
BmgT120I GGNCC 3 cut(s) 264, 828, 1021
BmiI GGNNCC 5 cut(s) 167, 266, 384, 718, 1185
BmrFI CCNGG 2 cut(s) 262, 721
BmrI ACTGGG 2 cut(s) 525, 1172
BmsI GCATC 2 cut(s) 109, 859
BmuI ACTGGG 2 cut(s) 525, 1172
BpmI CTGGAG 5 cut(s) 41, 226, 474, 504, 594
Bpu1102I GCTNAGC 1 cut(s) 640
BpuMI CCSGG 1 cut(s) 721
BsaJI CCNNGG 5 cut(s) 471, 617, 824, 914, 1131
BsaWI WCCGGW 2 cut(s) 941, 1167
Bsc4I CCNNNNNNNGG 4 cut(s) 447, 536, 593, 623
Bse118I RCCGGY 1 cut(s) 1167
Bse1I ACTGG 3 cut(s) 249, 531, 1178
BseAI TCCGGA 1 cut(s) 941
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 5 cut(s) 471, 617, 824, 914, 1131
BseGI GGATG 6 cut(s) 360, 481, 729, 772, 938, 1015
BseLI CCNNNNNNNGG 4 cut(s) 447, 536, 593, 623
BseMII CTCAG 1 cut(s) 1029
BseNI ACTGG 3 cut(s) 249, 531, 1178
BsePI GCGCGC 1 cut(s) 1114
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 5 cut(s) 21, 260, 476, 592, 807
BsgI GTGCAG 1 cut(s) 28
Bsh1236I CGCG 4 cut(s) 966, 1116, 1118, 1133
Bsh1285I CGRYCG 1 cut(s) 1172
BshFI GGCC 4 cut(s) 265, 829, 1014, 1023
BshTI ACCGGT 1 cut(s) 1167
BsiEI CGRYCG 1 cut(s) 1172
BsiHKAI GWGCWC 3 cut(s) 157, 490, 520
BsiHKCI CYCGRG 1 cut(s) 686
BsiSI CCGG 3 cut(s) 721, 942, 1168
BslI CCNNNNNNNGG 4 cut(s) 447, 536, 593, 623
BsmAI GTCTC 1 cut(s) 92
BsmI GAATGC 2 cut(s) 12, 61
BsnI GGCC 4 cut(s) 265, 829, 1014, 1023
BsoBI CYCGRG 1 cut(s) 686
Bsp1286I GDGCHC 5 cut(s) 157, 490, 520, 671, 1178
Bsp13I TCCGGA 1 cut(s) 941
Bsp143I GATC 9 cut(s) 41, 201, 292, 547, 709, 716, 835, 1033, 1183
Bsp1720I GCTNAGC 1 cut(s) 640
BspACI CCGC 8 cut(s) 320, 354, 644, 966, 1051, 1131, 1133, 1148
BspANI GGCC 4 cut(s) 265, 829, 1014, 1023
BspCNI CTCAG 1 cut(s) 1030
BspEI TCCGGA 1 cut(s) 941
BspFNI CGCG 4 cut(s) 966, 1116, 1118, 1133
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 5 cut(s) 167, 266, 384, 718, 1185
BspMI ACCTGC 1 cut(s) 881
BspPI GGATC 7 cut(s) 542, 711, 724, 830, 1028, 1178, 1191
BsrBI CCGCTC 1 cut(s) 1051
BsrFI RCCGGY 1 cut(s) 1167
BsrI ACTGG 3 cut(s) 249, 531, 1178
BssAI RCCGGY 1 cut(s) 1167
BssECI CCNNGG 5 cut(s) 471, 617, 824, 914, 1131
BssHII GCGCGC 1 cut(s) 1114
BssMI GATC 9 cut(s) 41, 201, 292, 547, 709, 716, 835, 1033, 1183
BssT1I CCWWGG 2 cut(s) 471, 914
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 4 cut(s) 159, 216, 427, 1155
Bst6I CTCTTC 1 cut(s) 963
BstAPI GCANNNNNTGC 2 cut(s) 741, 752
BstC8I GCNNGC 4 cut(s) 153, 733, 888, 1116
BstDEI CTNAG 2 cut(s) 640, 1038
BstDSI CCRYGG 1 cut(s) 1131
BstF5I GGATG 6 cut(s) 360, 481, 729, 772, 938, 1015
BstFNI CGCG 4 cut(s) 966, 1116, 1118, 1133
BstHHI GCGC 4 cut(s) 746, 820, 1116, 1118
BstKTI GATC 9 cut(s) 44, 204, 295, 550, 712, 719, 838, 1036, 1186
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 9 cut(s) 41, 201, 292, 547, 709, 716, 835, 1033, 1183
BstMCI CGRYCG 1 cut(s) 1172
BstMWI GCNNNNNNNGC 7 cut(s) 248, 271, 461, 741, 752, 826, 1020
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 890
BstSCI CCNGG 2 cut(s) 260, 719
BstSLI GKGCMC 1 cut(s) 157
BstUI CGCG 4 cut(s) 966, 1116, 1118, 1133
BstV1I GCAGC 5 cut(s) 21, 260, 476, 592, 807
BstX2I RGATCY 3 cut(s) 716, 835, 1183
BstYI RGATCY 3 cut(s) 716, 835, 1183
BsuRI GGCC 4 cut(s) 265, 829, 1014, 1023
BtgI CCRYGG 1 cut(s) 1131
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 6 cut(s) 360, 481, 729, 772, 938, 1015
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 4 cut(s) 242, 538, 792, 1185
BveI ACCTGC 1 cut(s) 881
Cac8I GCNNGC 4 cut(s) 153, 733, 888, 1116
CciI TCATGA 1 cut(s) 115
CfoI GCGC 4 cut(s) 746, 820, 1116, 1118
Cfr10I RCCGGY 1 cut(s) 1167
Cfr13I GGNCC 3 cut(s) 264, 828, 1021
Cfr42I CCGCGG 1 cut(s) 1134
Csp6I GTAC 2 cut(s) 878, 1124
CspAI ACCGGT 1 cut(s) 1167
CviAII CATG 4 cut(s) 116, 413, 707, 887
CviQI GTAC 2 cut(s) 878, 1124
DdeI CTNAG 2 cut(s) 640, 1038
DpnI GATC 9 cut(s) 43, 203, 294, 549, 711, 718, 837, 1035, 1185
DpnII GATC 9 cut(s) 41, 201, 292, 547, 709, 716, 835, 1033, 1183
EaeI YGGCCR 1 cut(s) 1012
Eam1104I CTCTTC 1 cut(s) 963
EarI CTCTTC 1 cut(s) 963
Eco130I CCWWGG 2 cut(s) 471, 914
Eco24I GRGCYC 2 cut(s) 671, 1178
Eco57I CTGAAG 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 686
EcoO109I RGGNCCY 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 471, 914
EcoT38I GRGCYC 2 cut(s) 671, 1178
ErhI CCWWGG 2 cut(s) 471, 914
FaeI CATG 4 cut(s) 119, 416, 710, 890
FatI CATG 4 cut(s) 115, 412, 706, 886
FauI CCCGC 1 cut(s) 959
Fnu4HI GCNGC 6 cut(s) 10, 249, 354, 465, 606, 821
FokI GGATG 6 cut(s) 347, 488, 736, 779, 925, 1022
FriOI GRGCYC 2 cut(s) 671, 1178
Fsp4HI GCNGC 6 cut(s) 10, 249, 354, 465, 606, 821
FspBI CTAG 4 cut(s) 672, 756, 846, 915
FspI TGCGCA 1 cut(s) 745
GlaI GCGC 4 cut(s) 745, 819, 1115, 1117
GluI GCNGC 6 cut(s) 10, 249, 354, 465, 606, 821
GsuI CTGGAG 5 cut(s) 41, 226, 474, 504, 594
HaeIII GGCC 4 cut(s) 265, 829, 1014, 1023
HapII CCGG 3 cut(s) 721, 942, 1168
HhaI GCGC 4 cut(s) 746, 820, 1116, 1118
Hin1II CATG 4 cut(s) 119, 416, 710, 890
Hin6I GCGC 4 cut(s) 744, 818, 1114, 1116
HinP1I GCGC 4 cut(s) 744, 818, 1114, 1116
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 2 cut(s) 800, 953
HpaII CCGG 3 cut(s) 721, 942, 1168
HphI GGTGA 6 cut(s) 204, 326, 428, 557, 834, 1081
Hpy166II GTNNAC 3 cut(s) 155, 212, 697
Hpy188I TCNGA 5 cut(s) 332, 394, 621, 652, 952
Hpy8I GTNNAC 3 cut(s) 155, 212, 697
HpyAV CCTTC 7 cut(s) 399, 567, 597, 666, 1060, 1075, 1137
HpyCH4III ACNGT 4 cut(s) 159, 216, 427, 1155
HpyCH4V TGCA 7 cut(s) 9, 155, 220, 792, 872, 890, 1158
HpyF10VI GCNNNNNNNGC 7 cut(s) 248, 271, 461, 741, 752, 826, 1020
HpyF3I CTNAG 2 cut(s) 640, 1038
Hsp92II CATG 4 cut(s) 119, 416, 710, 890
HspAI GCGC 4 cut(s) 744, 818, 1114, 1116
Kpn2I TCCGGA 1 cut(s) 941
KspI CCGCGG 1 cut(s) 1134
Kzo9I GATC 9 cut(s) 41, 201, 292, 547, 709, 716, 835, 1033, 1183
LmnI GCTCC 5 cut(s) 403, 493, 523, 613, 1048
Lsp1109I GCAGC 5 cut(s) 21, 260, 476, 592, 807
LweI GCATC 2 cut(s) 109, 859
MaeI CTAG 4 cut(s) 672, 756, 846, 915
MaeIII GTNAC 1 cut(s) 1137
MalI GATC 9 cut(s) 43, 203, 294, 549, 711, 718, 837, 1035, 1185
MbiI CCGCTC 1 cut(s) 1051
MboI GATC 9 cut(s) 41, 201, 292, 547, 709, 716, 835, 1033, 1183
MboII GAAGA 5 cut(s) 8, 593, 845, 950, 1084
MflI RGATCY 3 cut(s) 716, 835, 1183
MhlI GDGCHC 5 cut(s) 157, 490, 520, 671, 1178
MlsI TGGCCA 1 cut(s) 1014
MluCI AATT 3 cut(s) 105, 184, 782
MluNI TGGCCA 1 cut(s) 1014
MmeI TCCRAC 1 cut(s) 930
MnlI CCTC 6 cut(s) 54, 627, 682, 834, 972, 999
Mox20I TGGCCA 1 cut(s) 1014
MroI TCCGGA 1 cut(s) 941
MscI TGGCCA 1 cut(s) 1014
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 3 cut(s) 312, 891, 1029
Msp20I TGGCCA 1 cut(s) 1014
MspA1I CMGCKG 1 cut(s) 1133
MspI CCGG 3 cut(s) 721, 942, 1168
MspR9I CCNGG 2 cut(s) 262, 721
Mva1269I GAATGC 2 cut(s) 12, 61
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 4 cut(s) 966, 1116, 1118, 1133
MwoI GCNNNNNNNGC 7 cut(s) 248, 271, 461, 741, 752, 826, 1020
NciI CCSGG 1 cut(s) 721
NdeII GATC 9 cut(s) 41, 201, 292, 547, 709, 716, 835, 1033, 1183
NlaIII CATG 4 cut(s) 119, 416, 710, 890
NlaIV GGNNCC 5 cut(s) 167, 266, 384, 718, 1185
NmeAIII GCCGAG 1 cut(s) 805
NsbI TGCGCA 1 cut(s) 745
NspI RCATGY 1 cut(s) 890
PaeI GCATGC 1 cut(s) 890
PaeR7I CTCGAG 1 cut(s) 686
PagI TCATGA 1 cut(s) 115
PaqCI CACCTGC 1 cut(s) 881
PauI GCGCGC 1 cut(s) 1114
PctI GAATGC 2 cut(s) 12, 61
PfeI GAWTC 2 cut(s) 800, 953
PfoI TCCNGGA 1 cut(s) 719
PinAI ACCGGT 1 cut(s) 1167
PkrI GCNGC 6 cut(s) 11, 250, 355, 466, 607, 822
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 5 cut(s) 167, 266, 384, 718, 1185
PspPI GGNCC 3 cut(s) 264, 828, 1021
PsuI RGATCY 3 cut(s) 716, 835, 1183
PteI GCGCGC 1 cut(s) 1114
RsaI GTAC 2 cut(s) 879, 1125
RsaNI GTAC 2 cut(s) 878, 1124
RseI CAYNNNNRTG 3 cut(s) 312, 891, 1029
SacII CCGCGG 1 cut(s) 1134
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 6 cut(s) 10, 249, 354, 465, 606, 821
Sau3AI GATC 9 cut(s) 41, 201, 292, 547, 709, 716, 835, 1033, 1183
Sau96I GGNCC 3 cut(s) 264, 828, 1021
ScrFI CCNGG 2 cut(s) 262, 721
SduI GDGCHC 5 cut(s) 157, 490, 520, 671, 1178
SfaNI GCATC 2 cut(s) 109, 859
SfiI GGCCNNNNNGGCC 1 cut(s) 1020
Sfr274I CTCGAG 1 cut(s) 686
Sfr303I CCGCGG 1 cut(s) 1134
SgrBI CCGCGG 1 cut(s) 1134
SlaI CTCGAG 1 cut(s) 686
SmiMI CAYNNNNRTG 3 cut(s) 312, 891, 1029
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
SphI GCATGC 1 cut(s) 890
Sse9I AATT 3 cut(s) 105, 184, 782
SsiI CCGC 8 cut(s) 320, 354, 644, 966, 1051, 1131, 1133, 1148
SspMI CTAG 4 cut(s) 672, 756, 846, 915
StyD4I CCNGG 2 cut(s) 260, 719
StyI CCWWGG 2 cut(s) 471, 914
TaaI ACNGT 4 cut(s) 159, 216, 427, 1155
TaqI TCGA 2 cut(s) 687, 1172
TasI AATT 3 cut(s) 105, 184, 782
TatI WGTACW 1 cut(s) 877
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 2 cut(s) 800, 953
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 4 cut(s) 249, 538, 799, 1185
TseI GCWGC 5 cut(s) 9, 248, 464, 605, 820
TspDTI ATGAA 4 cut(s) 104, 296, 349, 927
TspRI CASTG 4 cut(s) 249, 538, 799, 1185
VneI GTGCAC 1 cut(s) 153
XapI RAATTY 1 cut(s) 105
XceI RCATGY 1 cut(s) 890
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XhoI CTCGAG 1 cut(s) 686
XmaJI CCTAGG 1 cut(s) 914
XspI CTAG 4 cut(s) 672, 756, 846, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.