Rw7G005620

Transcription initiation factor TFIID

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003127
Physical Location & Seq
Forward (+)
4727253 .. 4737498
10246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G005620.1

Sequence Viewer

Length: 4419 bp
ATGGCGAAGCCTCGCAAGCCCAAGAACGACGACGCCAAGCCCGACAATTCCGGACCCGTCGTCCGCCACCAGAAGCTCTGCCTCTCCATCGACCTCGCCAACCGTCGCATTTACGGGTACACTGAGCTGAAGATTATGGTGCCGGAGATAGGGATTGTAGGGTTACACGCGGAGAATTTGGGGATTGAGAGTGTTTCCGTCGACGGCGAGCCGACGGAGTTTGAGTACTATCCTCACAGTAACCATAGGGATTCGGAGAGCGAGAGGGACTGGAGCTCGGTGACGTCACCGAGCTCTGCTGCTGACGCGGCCGGTTCGAGTTATTTGTCGGCTCTTGAGAGAGAATTGGTACCGAATTTACTGATTAATTGCTGTAAGGCTTTCAAGGCTGGAAGTGAAGTACAGGAGCAGGTGGTGGTGGTGGTGGAGAATGAGGCGGCGCAACAGTCGTCTGAAGAAGCCAAGCAGAATTTGAGGTTGGTTCGGATTGATTATTGGGTAGAGAAAGCGGAGACAGGGATTTACTTCTGTAATAATGTGCTACACACCGATAACCAAATGCGGCGTGCAAGGTGCTGGTTCCCTTGTATGGATGACTGTTCACAGAGCTGCTGCTATGATCTGGAGTTTACTGTGGCACGGAATCTTGTGGCTGTTAGCAATGGAAGCTTACTCTACCAGGTTCTGAGCAAGGATGATCCGCCTCGCAAAACATATGTCTATAGACTAGATGTTCCAGTTAGTGCTCGGTGGATATCTTTAGTGGTTGCACCCTTTGAAATCCTTCCGGACCACCAATCTGGTCTAATATCTCACATGTGCTTGCCAGCAAATCTGTCAAAGCTTCGCAACACTGTAGATTTTTTCCACGGTGCATTTAGCTGTTACAAGGATTATCTAGCGGTAAACTTTCCTTTTGGGTCATACAAACAAGTTTTTATAGAGCCTGAGATGGCAGTATCCTCCTTGAGTTCAGGGGCATCCATGAGCATTTTCAGTTCTCAAGTTTTATTTGATGAGAAGATTATTGATCAGACTATTGACACGAGGATTAAACTTGCATTTGCCCTTGCAAGACAATGGTTTGGTGTTTATATCACTCCTGATGCACCGAATGATGAGTGGCTGCTTGATGGTCTAGCTGGGTTTTTGACAGATTTATTTATAAAAAAGTATTTAGGAAATAATGAAGCCCGCTATCGGAGATACAAGGCAAATTGTGCCGTTTGTAGAGCAGATGATAGTGGTGCAACTGCGCTAAGCTCCACTGCTTCTTGTAAGGATTTGTTTGGCACTCAGTGCATTGGAATATACAGCAAAATTAGATCATGGAAATCTGTGGCTATACTTCAAATGTTGGAAAAGCAGATGGGACCCGAGTCTTTCCGTAAAATTTTGCAAACAATAGTTTCGAGGGCCCAAGATAAGACGCGTTCTCTGAGATCTCTCAGTACTAAGGAGTTTAGGCATTTTGCTAATAAAGTTGGTAATCTTGAGCGTCCTTTTCTCAAAGAATTCTTTCCTCGCTGGGTAGAACTGTGTGGTTGTCCAGTGCTGAGGATGGGCTTCTCCTACAACAAACGAAAGAATATGGTTGAAGTTGCAGTTTTACGTGGGTGCACAGAAATGTCGGATTCAAGTGCTTCAACTGTTAATGCTAATTCAGAATCTGAAAAGCGTGACAGTGATAGTGGATGGCCTGGAATGATGAGCATCAGAGTTCATGAACTTGATGGTACATTTGACCATCCGGTTCTGCCAATGGCTGGAGAAACAGTCCAGCTGCTGGAAATACAATGTCATTCAAAACTTGCTGCTAGACGCTTTCAGAAGCCTAAAAAGGGTTCAAAGCTTGATGGAGCAGATGATAATGGAGATGCAACTCCTGCCCTAGATATACGCTCCAGTATGGAATCTCCGTTGCTGTGGATGAGGGCAGATCCAGAAATGGAATACCTTGCTGAAATTCATTTCAATCAACCTGTACAGATGTGGATTAATCAGTTGGAGAAGGACAAAGATGTTGTTGCTCAGGCACAAGCAATTGCAATGCTTGAATCCTTACCTCAGCTTCCATTTTCTGTTGTTAATGCTCTTAATAACTTCCTCATTGACTCCAAGGCCTTCTGGAGAGTTCGAATTGAGGCTGCCTTTGCATTGGCTAATACAGCATCTGAGGATACGGATTGGGCTGGTCTACTCCATTTGGTGACATTCTATAAAAGTCGAAGGTTTGATGCAAACATTGGACTCCCCAAGCCAAATGACTTCCATGATATTCCCGAATACTTAGTTCTTGAGGCAATTCCACATGCTGTAGCTATGGTTAGAGCTGCTGACCAGAAAAGCCCAAGAGAGGCTGTTGAGTTTGTCCTACAACTGTTGAAGTACAATGACAACAATGGGAACTCTTATTCTGATGTGTTCTGGCTTTCTTCATTAATTCAGTCTGTCGGAGAACTTGAATTTGGGCAACAGAGTATTGTCCTTTTATCATCTCTTCTTAAGCGTATTGATCGGCTTTTGCAATTTGACAGGTTGATGCCTAGCTACAATGGTATCTTGTCAGTCAGCTGTATCAGGTCCCTGACACATATTGCCTTGAAACTTATGGGATTTGTTCCTCTTGATCGTGTGTTTGAACTTGTAAAACCTTTTCGCGATATCAAGGCCATATGGCAAGTTAGGGTTGAAGCAAGCAGAGCACTCCTTGATCTTGAATTCCACTGCAAAGGCATTGATGCAGCTTTGGCATTATTTATGAGATATTTAGATGAAGAGCCATCCTTCAGAGGTCAGGTGAAGTTGGCTGTGCATGCTATGAGGTTATGCAAGGTAAGAGGTGGATCTGATTGTGAGGATGAAGTTCAGAGCCAGACTCTTGTGGCTTTACTTCGCCTACTTGAAGGCCAGATGGCATTTAATAATATCTTTCTTCGTCACCACGTATTCTGCATCCTACAAATCCTTGCAGGAAGGCCCCCAACCTTATTTGGAGTGCCAAGAGATCATAGACCATTGCTTCTAGGTGATGCAGAAGGCTTACACGTGCAGAAGAACATTTTTGCTGCTTTCATTCCAGAAAGTAAATCCCAGGAACCACCTTCTGACCATGCACATGATGGTGTGTCTGTTCCCGAAACTTCCAGAGACGTTTTGGGTGTTCCAGAAGCTACCATGGATGGGTTGTCCGCTCCAGCCCCAGGAGCTTTTAGAGATGGGTTGTCCATTGCAGCTCCAGAAGTATCCATGGATGGGTTGTCAGTTCCAGCTCCAGAAGCTCTTAGAGATGGGTTGGCCTTTGCAGAAGCTTCCAAGGAAGATTTTGGTGCTTCAGAACCTCCCAATGATGCTTTCATTGGTTTGGGTCCTTTAGAACCTTTCAGTGATGATTTGGTTACAGTGGTAGATCCTTCCGCTGGTGGTTTGGGTGCTGTGGAAACTTCCAAGGATGTCATGGCAGCAGTTCCGGAACCTCCCAAGGATATCTTGATAGTTCCTGAACCTTCCAAGGATATCTTGATAGCTCCTGATCGTTCCATGGATAACTTGGCAGTTCGTGAACCTTCCAAGGAAGCAGATACCATTTCCAACAGTCACAGACGGAAGTTGCCAGTTGTTAAGATCAGGGTAAAAAAATCTGCTACTAATAGCAGAGCAGAAGAAGGCGATAATCAAACTGTTGAGAGATCTCAAGGTGGGCATGCTAGCAGTTCAGTTTCTGTGGATGCACCTCACAGGAATTTCCGAGAAGTTGCGAGCCTTAGCAACCAAAACTTTGAGGAAGTTAACTCTTGTCATGATCGTGGATCTCGGATGACTGCCAGCATCGGTAGTGCAAAATTTGCAAGTGATGCTGATGATAATATAGGAAGGGAATTGCAGTGCACTGCTGATTCAAGCAAAGTTTCTGTACAGCCTCGACCCGATATTTCATCACCTAGCTTCATGCAAGATAACCAAGATGCAGATGTGCAGAAGTACGCAAGCCTTCAGGCTCTTTCAGCTCCGAGGAATGATCTTAATGGTGGTTCTTTTGGCACAGTGGATGTACTGCCTCGTGGGAAGGAAAAGGAGAGAAAGAAAGACAAGGACAAGAAAAGGAAGCGGGATAAAGGCCATCGAGATGATCCCGAGTATATTGAGCGAAAACGATTAAAGAAGGAGAAAAGGCAGAAAGAGAAGGAGCTGTCGAAGTTGTTGAGTGACAGTGCCAAAGTACCTTCCCTGGACGTACCAAGTAAGGAGGTACTTGGAATGAAGTCTGCAACTTTGCAACTGAAACCAGTTGAGCCCAGTAGATCAAACAAATTAGTCCTCGCAACTGTTGAAGGGACCAGGCCCGAGGCATCAGGAACTAAAACCATCACCCCTAAGATTCGTATTAAAACCAAATTTCGAACTCTGGACAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Peptidase_M1

Protein Analysis

1472

Amino Acids

163.71

Weight (kDa)

6.18

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M1 PF01433 291 - 484 3.3e-13 Peptidase family M1 domain
TAF2_3rd PF25316 514 - 661 2.5e-40 TAF2 Ig-like domain
TPR_TAF2_C PF25577 664 - 965 1.1e-37 TAF2-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1166
AarI CACCTGC 1 cut(s) 400
AatII GACGTC 1 cut(s) 287
Acc36I ACCTGC 1 cut(s) 400
Acc65I GGTACC 1 cut(s) 349
AccB1I GGYRCC 2 cut(s) 139, 349
AccB7I CCANNNNNTGG 2 cut(s) 1766, 1786
AccBSI CCGCTC 1 cut(s) 3194
AccI GTMKAC 2 cut(s) 201, 2197
AccII CGCG 4 cut(s) 170, 308, 1432, 2661
AccIII TCCGGA 3 cut(s) 50, 787, 3469
AclWI GGATC 6 cut(s) 692, 1934, 2854, 3404, 3817, 4124
AcoI YGGCCR 1 cut(s) 309
AcuI CTGAAG 5 cut(s) 149, 474, 2773, 3318, 3977
AcvI CACGTG 1 cut(s) 3049
AcyI GRCGYC 2 cut(s) 33, 284
AdeI CACNNNGTG 1 cut(s) 1299
AflII CTTAAG 1 cut(s) 2504
AflIII ACRYGT 3 cut(s) 816, 1430, 3046
AhdI GACNNNNNGTC 1 cut(s) 59
AjnI CCWGG 6 cut(s) 678, 1699, 3093, 3202, 4227, 4337
AjuI GAANNNNNNNTTGG 6 cut(s) 461, 493, 2451, 2483, 3338, 3370
Alw21I GWGCWC 6 cut(s) 278, 296, 748, 1622, 2707, 3890
Alw26I GTCTC 2 cut(s) 506, 3144
Alw44I GTGCAC 2 cut(s) 1618, 3886
AlwI GGATC 6 cut(s) 692, 1934, 2854, 3404, 3817, 4124
AlwNI CAGNNNCTG 5 cut(s) 685, 1670, 1786, 2174, 3722
Ama87I CYCGRG 3 cut(s) 1376, 4133, 4343
Aor13HI TCCGGA 3 cut(s) 50, 787, 3469
ApaI GGGCCC 1 cut(s) 1420
ApaLI GTGCAC 2 cut(s) 1618, 3886
ArsI GACNNNNNNTTYG 2 cut(s) 702, 734
AseI ATTAAT 3 cut(s) 366, 1998, 2441
Asp700I GAANNNNTTC 2 cut(s) 783, 1518
Asp718I GGTACC 1 cut(s) 349
AspLEI GCGC 2 cut(s) 442, 1258
AsuHPI GGTGA 8 cut(s) 279, 292, 2221, 2812, 2933, 3041, 3930, 4360
AsuII TTCGAA 2 cut(s) 2137, 4399
AsuNHI GCTAGC 1 cut(s) 3707
AvaI CYCGRG 3 cut(s) 1376, 4133, 4343
AvaII GGWCC 6 cut(s) 53, 790, 1373, 2583, 3368, 4335
BaeGI GKGCMC 3 cut(s) 1420, 1622, 3890
BaeI ACNNNNGTAYC 2 cut(s) 2542, 2575
BanI GGYRCC 2 cut(s) 139, 349
BanII GRGCYC 4 cut(s) 278, 296, 1420, 4296
BauI CACGAG 2 cut(s) 1045, 4059
BbrPI CACGTG 1 cut(s) 3049
Bbv12I GWGCWC 6 cut(s) 278, 296, 748, 1622, 2707, 3890
BbvCI CCTCAGC 2 cut(s) 1556, 2067
BceAI ACGGC 2 cut(s) 220, 1208
BciT130I CCWGG 6 cut(s) 680, 1701, 3095, 3204, 4229, 4339
BciVI GTATCC 3 cut(s) 970, 2173, 3256
BclI TGATCA 1 cut(s) 1030
BcoDI GTCTC 2 cut(s) 506, 3144
BfaI CTAG 9 cut(s) 728, 899, 1139, 1818, 1892, 2547, 3026, 3708, 3942
BfmI CTRYAG 3 cut(s) 721, 855, 2316
BfrI CTTAAG 1 cut(s) 2504
BfuAI ACCTGC 1 cut(s) 400
BfuI GTATCC 3 cut(s) 970, 2173, 3256
BglII AGATCT 2 cut(s) 1442, 3689
BlpI GCTNAGC 1 cut(s) 1259
BmcAI AGTACT 2 cut(s) 227, 1453
Bme1390I CCNGG 6 cut(s) 680, 1701, 3095, 3204, 4229, 4339
Bme18I GGWCC 6 cut(s) 53, 790, 1373, 2583, 3368, 4335
BmeRI GACNNNNNGTC 1 cut(s) 59
BmeT110I CYCGRG 3 cut(s) 1376, 4133, 4343
BmrFI CCNGG 6 cut(s) 680, 1701, 3095, 3204, 4229, 4339
BmrI ACTGGG 1 cut(s) 4290
BmtI GCTAGC 1 cut(s) 3711
BmuI ACTGGG 1 cut(s) 4290
BoxI GACNNNNGTC 1 cut(s) 1378
BplI GAGNNNNNCTC 2 cut(s) 2863, 2895
BpmI CTGGAG 8 cut(s) 292, 644, 1788, 1888, 2149, 3180, 3222, 3258
Bpu10I CCTNAGC 4 cut(s) 1556, 2031, 2067, 3764
Bpu1102I GCTNAGC 1 cut(s) 1259
Bpu14I TTCGAA 2 cut(s) 2137, 4399
BpuEI CTTGAG 6 cut(s) 356, 987, 988, 1514, 2318, 3678
BsaAI YACGTR 3 cut(s) 1613, 2947, 3049
BsaBI GATNNNNATC 1 cut(s) 1712
BsaHI GRCGYC 2 cut(s) 33, 284
BsaWI WCCGGW 4 cut(s) 50, 787, 1750, 3469
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 1761, 1791
Bse118I RCCGGY 1 cut(s) 311
Bse1I ACTGG 7 cut(s) 275, 737, 1550, 1905, 3614, 4286, 4296
Bse3DI GCAATG 4 cut(s) 667, 2055, 3017, 3228
Bse8I GATNNNNATC 1 cut(s) 1712
BseAI TCCGGA 3 cut(s) 50, 787, 3469
BseBI CCWGG 6 cut(s) 680, 1701, 3095, 3204, 4229, 4339
BseJI GATNNNNATC 1 cut(s) 1712
BseMI GCAATG 4 cut(s) 667, 2055, 3017, 3228
BseNI ACTGG 7 cut(s) 275, 737, 1550, 1905, 3614, 4286, 4296
BseSI GKGCMC 3 cut(s) 1420, 1622, 3890
BseX3I CGGCCG 1 cut(s) 309
BseYI CCCAGC 2 cut(s) 1142, 1527
BsgI GTGCAG 2 cut(s) 3071, 3995
Bsh1236I CGCG 4 cut(s) 170, 308, 1432, 2661
Bsh1285I CGRYCG 1 cut(s) 312
BshNI GGYRCC 2 cut(s) 139, 349
BsiEI CGRYCG 1 cut(s) 312
BsiHKAI GWGCWC 6 cut(s) 278, 296, 748, 1622, 2707, 3890
BsiHKCI CYCGRG 3 cut(s) 1376, 4133, 4343
BsiSI CCGG 6 cut(s) 51, 143, 312, 788, 1751, 3470
BslFI GGGAC 4 cut(s) 281, 1386, 2569, 4348
BsmAI GTCTC 2 cut(s) 506, 3144
BsmBI CGTCTC 1 cut(s) 3144
BsmFI GGGAC 4 cut(s) 281, 1386, 2569, 4348
BsoBI CYCGRG 3 cut(s) 1376, 4133, 4343
Bsp119I TTCGAA 2 cut(s) 2137, 4399
Bsp120I GGGCCC 1 cut(s) 1416
Bsp1286I GDGCHC 8 cut(s) 278, 296, 748, 1420, 1622, 2707, 3890, 4296
Bsp13I TCCGGA 3 cut(s) 50, 787, 3469
Bsp1407I TGTACA 2 cut(s) 1984, 3913
Bsp1720I GCTNAGC 1 cut(s) 1259
Bsp19I CCATGG 3 cut(s) 3177, 3249, 3540
Bsp68I TCGCGA 1 cut(s) 2661
BspEI TCCGGA 3 cut(s) 50, 787, 3469
BspFNI CGCG 4 cut(s) 170, 308, 1432, 2661
BspHI TCATGA 2 cut(s) 1723, 3799
BspMI ACCTGC 1 cut(s) 400
BspOI GCTAGC 1 cut(s) 3711
BspPI GGATC 6 cut(s) 692, 1934, 2854, 3404, 3817, 4124
BspQI GCTCTTC 1 cut(s) 2772
BspT104I TTCGAA 2 cut(s) 2137, 4399
BspT107I GGYRCC 2 cut(s) 139, 349
BspTI CTTAAG 1 cut(s) 2504
BsrBI CCGCTC 1 cut(s) 3194
BsrDI GCAATG 4 cut(s) 667, 2055, 3017, 3228
BsrFI RCCGGY 1 cut(s) 311
BsrGI TGTACA 2 cut(s) 1984, 3913
BsrI ACTGG 7 cut(s) 275, 737, 1550, 1905, 3614, 4286, 4296
BssAI RCCGGY 1 cut(s) 311
BssNI GRCGYC 2 cut(s) 33, 284
BssSI CACGAG 2 cut(s) 1045, 4059
BssT1I CCWWGG 9 cut(s) 2118, 3177, 3249, 3315, 3447, 3480, 3510, 3540, 3570
Bst2BI CACGAG 2 cut(s) 1045, 4059
Bst2UI CCWGG 6 cut(s) 680, 1701, 3095, 3204, 4229, 4339
Bst6I CTCTTC 2 cut(s) 2505, 2772
BstACI GRCGYC 2 cut(s) 33, 284
BstAFI CTTAAG 1 cut(s) 2504
BstAPI GCANNNNNTGC 5 cut(s) 1220, 1299, 1886, 3845, 3854
BstAUI TGTACA 2 cut(s) 1984, 3913
BstBAI YACGTR 3 cut(s) 1613, 2947, 3049
BstBI TTCGAA 2 cut(s) 2137, 4399
BstDSI CCRYGG 4 cut(s) 868, 3177, 3249, 3540
BstFNI CGCG 4 cut(s) 170, 308, 1432, 2661
BstHHI GCGC 2 cut(s) 442, 1258
BstMAI GTCTC 2 cut(s) 506, 3144
BstMCI CGRYCG 1 cut(s) 312
BstNI CCWGG 6 cut(s) 680, 1701, 3095, 3204, 4229, 4339
BstNSI RCATGY 4 cut(s) 820, 2315, 2819, 3707
BstPAI GACNNNNGTC 1 cut(s) 1378
BstSCI CCNGG 6 cut(s) 678, 1699, 3093, 3202, 4227, 4337
BstSFI CTRYAG 3 cut(s) 721, 855, 2316
BstSLI GKGCMC 3 cut(s) 1420, 1622, 3890
BstUI CGCG 4 cut(s) 170, 308, 1432, 2661
BstX2I RGATCY 6 cut(s) 1442, 1939, 2846, 3409, 3689, 3809
BstXI CCANNNNNNTGG 1 cut(s) 800
BstYI RGATCY 6 cut(s) 1442, 1939, 2846, 3409, 3689, 3809
BstZI CGGCCG 1 cut(s) 309
BsuI GTATCC 3 cut(s) 970, 2173, 3256
BtgI CCRYGG 4 cut(s) 868, 3177, 3249, 3540
BtsI GCAGTG 4 cut(s) 1266, 2725, 3888, 3890
BtuMI TCGCGA 1 cut(s) 2661
BveI ACCTGC 1 cut(s) 400
CaiI CAGNNNCTG 5 cut(s) 685, 1670, 1786, 2174, 3722
CciI TCATGA 2 cut(s) 1723, 3799
CfoI GCGC 2 cut(s) 442, 1258
Cfr10I RCCGGY 1 cut(s) 311
CseI GACGC 5 cut(s) 41, 314, 1438, 1487, 1830
CsiI ACCWGGT 1 cut(s) 678
DraIII CACNNNGTG 1 cut(s) 1299
DriI GACNNNNNGTC 1 cut(s) 59
EaeI YGGCCR 1 cut(s) 309
EagI CGGCCG 1 cut(s) 309
Eam1104I CTCTTC 2 cut(s) 2505, 2772
Eam1105I GACNNNNNGTC 1 cut(s) 59
EarI CTCTTC 2 cut(s) 2505, 2772
EciI GGCGGA 2 cut(s) 53, 690
Ecl136II GAGCTC 2 cut(s) 276, 294
EclXI CGGCCG 1 cut(s) 309
Eco130I CCWWGG 9 cut(s) 2118, 3177, 3249, 3315, 3447, 3480, 3510, 3540, 3570
Eco147I AGGCCT 1 cut(s) 2123
Eco24I GRGCYC 4 cut(s) 278, 296, 1420, 4296
Eco32I GATATC 4 cut(s) 756, 2665, 3487, 3517
Eco47I GGWCC 6 cut(s) 53, 790, 1373, 2583, 3368, 4335
Eco52I CGGCCG 1 cut(s) 309
Eco53kI GAGCTC 2 cut(s) 276, 294
Eco57I CTGAAG 5 cut(s) 149, 474, 2773, 3318, 3977
Eco72I CACGTG 1 cut(s) 3049
Eco88I CYCGRG 3 cut(s) 1376, 4133, 4343
EcoICRI GAGCTC 2 cut(s) 276, 294
EcoO109I RGGNCCY 5 cut(s) 1373, 1416, 2583, 2979, 3368
EcoRI GAATTC 2 cut(s) 1514, 2720
EcoRII CCWGG 6 cut(s) 678, 1699, 3093, 3202, 4227, 4337
EcoRV GATATC 4 cut(s) 756, 2665, 3487, 3517
EcoT14I CCWWGG 9 cut(s) 2118, 3177, 3249, 3315, 3447, 3480, 3510, 3540, 3570
EcoT38I GRGCYC 4 cut(s) 278, 296, 1420, 4296
ErhI CCWWGG 9 cut(s) 2118, 3177, 3249, 3315, 3447, 3480, 3510, 3540, 3570
Esp3I CGTCTC 1 cut(s) 3144
FalI AAGNNNNNCTT 4 cut(s) 3473, 3505, 3503, 3535
FaqI GGGAC 4 cut(s) 281, 1386, 2569, 4348
FauI CCCGC 2 cut(s) 1202, 4101
FauNDI CATATG 2 cut(s) 715, 2675
FbaI TGATCA 1 cut(s) 1030
FblI GTMKAC 2 cut(s) 201, 2197
FriOI GRGCYC 4 cut(s) 278, 296, 1420, 4296
FspBI CTAG 9 cut(s) 728, 899, 1139, 1818, 1892, 2547, 3026, 3708, 3942
GlaI GCGC 2 cut(s) 441, 1257
GsaI CCCAGC 2 cut(s) 1146, 1531
GsuI CTGGAG 8 cut(s) 292, 644, 1788, 1888, 2149, 3180, 3222, 3258
HapII CCGG 6 cut(s) 51, 143, 312, 788, 1751, 3470
HgaI GACGC 5 cut(s) 41, 314, 1438, 1487, 1830
HhaI GCGC 2 cut(s) 442, 1258
Hin1I GRCGYC 2 cut(s) 33, 284
Hin6I GCGC 2 cut(s) 440, 1256
HinP1I GCGC 2 cut(s) 440, 1256
HincII GTYRAC 2 cut(s) 202, 3790
HindII GTYRAC 2 cut(s) 202, 3790
HindIII AAGCTT 4 cut(s) 667, 842, 1850, 3309
HpaI GTTAAC 1 cut(s) 3790
HpaII CCGG 6 cut(s) 51, 143, 312, 788, 1751, 3470
HphI GGTGA 8 cut(s) 279, 292, 2221, 2812, 2933, 3041, 3930, 4360
Hpy99I CGWCG 7 cut(s) 32, 35, 62, 108, 203, 206, 217
HpyCH4IV ACGT 6 cut(s) 284, 1612, 2946, 3048, 3153, 4233
HpySE526I ACGT 6 cut(s) 284, 1612, 2946, 3048, 3153, 4233
Hsp92I GRCGYC 2 cut(s) 33, 284
HspAI GCGC 2 cut(s) 440, 1256
KflI GGGWCCC 1 cut(s) 1373
Kpn2I TCCGGA 3 cut(s) 50, 787, 3469
KpnI GGTACC 1 cut(s) 353
Ksp22I TGATCA 1 cut(s) 1030
KspAI GTTAAC 1 cut(s) 3790
LguI GCTCTTC 1 cut(s) 2772
MabI ACCWGGT 1 cut(s) 678
MaeI CTAG 9 cut(s) 728, 899, 1139, 1818, 1892, 2547, 3026, 3708, 3942
MaeII ACGT 6 cut(s) 284, 1612, 2946, 3048, 3153, 4233
MbiI CCGCTC 1 cut(s) 3194
MfeI CAATTG 1 cut(s) 2043
MflI RGATCY 6 cut(s) 1442, 1939, 2846, 3409, 3689, 3809
MhlI GDGCHC 8 cut(s) 278, 296, 748, 1420, 1622, 2707, 3890, 4296
MluI ACGCGT 1 cut(s) 1430
MlyI GAGTC 4 cut(s) 1388, 2108, 2244, 2872
MmeI TCCRAC 5 cut(s) 1338, 1611, 1986, 2434, 3615
MroI TCCGGA 3 cut(s) 50, 787, 3469
MroXI GAANNNNTTC 2 cut(s) 783, 1518
MslI CAYNNNNRTG 5 cut(s) 1625, 3117, 3123, 3804, 4125
MspA1I CMGCKG 3 cut(s) 1783, 2574, 3419
MspCI CTTAAG 1 cut(s) 2504
MspI CCGG 6 cut(s) 51, 143, 312, 788, 1751, 3470
MspR9I CCNGG 6 cut(s) 680, 1701, 3095, 3204, 4229, 4339
MunI CAATTG 1 cut(s) 2043
MvaI CCWGG 6 cut(s) 680, 1701, 3095, 3204, 4229, 4339
MvnI CGCG 4 cut(s) 170, 308, 1432, 2661
NcoI CCATGG 3 cut(s) 3177, 3249, 3540
NdeI CATATG 2 cut(s) 715, 2675
NheI GCTAGC 1 cut(s) 3707
NmuCI GTSAC 7 cut(s) 280, 285, 1679, 2209, 2939, 3596, 4205
NruI TCGCGA 1 cut(s) 2661
NspI RCATGY 4 cut(s) 820, 2315, 2819, 3707
NspV TTCGAA 2 cut(s) 2137, 4399
PaeI GCATGC 2 cut(s) 2819, 3707
PagI TCATGA 2 cut(s) 1723, 3799
PaqCI CACCTGC 1 cut(s) 400
PceI AGGCCT 1 cut(s) 2123
PciI ACATGT 1 cut(s) 816
PciSI GCTCTTC 1 cut(s) 2772
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdmI GAANNNNTTC 2 cut(s) 783, 1518
PfeI GAWTC 8 cut(s) 251, 643, 1634, 1667, 1913, 2057, 3896, 4378
PflMI CCANNNNNTGG 2 cut(s) 1766, 1786
PleI GAGTC 4 cut(s) 1387, 2108, 2244, 2872
PmaCI CACGTG 1 cut(s) 3049
PmlI CACGTG 1 cut(s) 3049
PpsI GAGTC 4 cut(s) 1387, 2108, 2244, 2872
Ppu21I YACGTR 3 cut(s) 1613, 2947, 3049
PpuMI RGGWCCY 3 cut(s) 1373, 2583, 3368
PscI ACATGT 1 cut(s) 816
PshAI GACNNNNGTC 1 cut(s) 1378
PshBI ATTAAT 3 cut(s) 366, 1998, 2441
PsiI TTATAA 1 cut(s) 1166
Psp124BI GAGCTC 2 cut(s) 278, 296
Psp5II RGGWCCY 3 cut(s) 1373, 2583, 3368
Psp6I CCWGG 6 cut(s) 678, 1699, 3093, 3202, 4227, 4337
PspCI CACGTG 1 cut(s) 3049
PspFI CCCAGC 2 cut(s) 1142, 1527
PspGI CCWGG 6 cut(s) 678, 1699, 3093, 3202, 4227, 4337
PspOMI GGGCCC 1 cut(s) 1416
PspPPI RGGWCCY 3 cut(s) 1373, 2583, 3368
PstNI CAGNNNCTG 5 cut(s) 685, 1670, 1786, 2174, 3722
PsuI RGATCY 6 cut(s) 1442, 1939, 2846, 3409, 3689, 3809
PvuII CAGCTG 2 cut(s) 1783, 2574
RruI TCGCGA 1 cut(s) 2661
RseI CAYNNNNRTG 5 cut(s) 1625, 3117, 3123, 3804, 4125
SacI GAGCTC 2 cut(s) 278, 296
SalI GTCGAC 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 2772
ScaI AGTACT 2 cut(s) 227, 1453
SchI GAGTC 4 cut(s) 1388, 2108, 2244, 2872
ScrFI CCNGG 6 cut(s) 680, 1701, 3095, 3204, 4229, 4339
SduI GDGCHC 8 cut(s) 278, 296, 748, 1420, 1622, 2707, 3890, 4296
SexAI ACCWGGT 1 cut(s) 678
SfcI CTRYAG 3 cut(s) 721, 855, 2316
SfuI TTCGAA 2 cut(s) 2137, 4399
SgrDI CGTCGACG 1 cut(s) 200
SinI GGWCC 6 cut(s) 53, 790, 1373, 2583, 3368, 4335
SmiMI CAYNNNNRTG 5 cut(s) 1625, 3117, 3123, 3804, 4125
SmlI CTYRAG 7 cut(s) 335, 967, 1002, 1493, 2297, 2504, 3693
SmoI CTYRAG 7 cut(s) 335, 967, 1002, 1493, 2297, 2504, 3693
SphI GCATGC 2 cut(s) 2819, 3707
SseBI AGGCCT 1 cut(s) 2123
SspMI CTAG 9 cut(s) 728, 899, 1139, 1818, 1892, 2547, 3026, 3708, 3942
SstI GAGCTC 2 cut(s) 278, 296
StuI AGGCCT 1 cut(s) 2123
StyD4I CCNGG 6 cut(s) 678, 1699, 3093, 3202, 4227, 4337
StyI CCWWGG 9 cut(s) 2118, 3177, 3249, 3315, 3447, 3480, 3510, 3540, 3570
TaiI ACGT 6 cut(s) 287, 1615, 2949, 3051, 3156, 4236
TatI WGTACW 7 cut(s) 225, 400, 1451, 1984, 2388, 3913, 4051
TauI GCSGC 3 cut(s) 311, 440, 565
TfiI GAWTC 8 cut(s) 251, 643, 1634, 1667, 1913, 2057, 3896, 4378
TseFI GTSAC 7 cut(s) 280, 285, 1679, 2209, 2939, 3596, 4205
Tsp45I GTSAC 7 cut(s) 280, 285, 1679, 2209, 2939, 3596, 4205
TspGWI ACGGA 7 cut(s) 187, 230, 655, 1376, 1908, 2198, 3619
Van91I CCANNNNNTGG 2 cut(s) 1766, 1786
Vha464I CTTAAG 1 cut(s) 2504
VneI GTGCAC 2 cut(s) 1618, 3886
VpaK11BI GGWCC 6 cut(s) 53, 790, 1373, 2583, 3368, 4335
VspI ATTAAT 3 cut(s) 366, 1998, 2441
XceI RCATGY 4 cut(s) 820, 2315, 2819, 3707
XcmI CCANNNNNNNNNTGG 4 cut(s) 3119, 3154, 3454, 3547
XmiI GTMKAC 2 cut(s) 201, 2197
XmnI GAANNNNTTC 2 cut(s) 783, 1518
XspI CTAG 9 cut(s) 728, 899, 1139, 1818, 1892, 2547, 3026, 3708, 3942
ZraI GACGTC 1 cut(s) 285
ZrmI AGTACT 2 cut(s) 227, 1453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.