Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000289.1

Orthogroup ID

OG0003127

Physical Location & Seq

Genomic Coordinates Reverse (-)

204475 .. 214885

Gene Structure 10411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000289.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4563 bp

atggcgaagcctcgcaagcccaagaacgacgacgccaagcccgacaattccggacccgtcgtccgccaccagaagctctgcctctccatcgacctcgccaaccgtcgcatttacgggtacactgagctgaagattatggtgccggagatagggattgtagggttacacgcggagaatttggggattgagagtgtttccgtcgacggcgagccgacggagtttgagtactatcctcacagtaaccatagggattcggagagcgagagggactggagctcggtgacgtcaccgagctctgctgctgacgcggccggttcgagttatttgtcggctcttgagagagaattggtgccgaatttactgattaattgctgtaaggctttcaaggctggaagtgaagtacaggagcaggtggtggtggtggtggagaacgaggcggcccaacagtcgtctgaagaagccaagcagaatttgaggttggttcggattgattattgggtagagaaagcggagacagggatttacttctgtaataatgtgctacacaccgataaccaaatgcggcgtgcaaggtgctggttcccttgtatggatgactgttcacagagctgctgctatgatctggagtttactgtggcacggaatcttgtggctgttagcaatggaagcttactctaccaggttctgagcaaggatgatccgcctcgcaaaacatatgtctatagactagatgttccagttagtgctcggtggatatctttagtggttgcaccctttgaaatccttccggaccaccaatctggtctaatatctcacatgtgcttgccagcaaatctgtcaaagcttcgcaacactgtagattttttccacggtgcatttagctgttacaaggattatctagcggtaaactttccttttgggtcatacaaacaagtttttatagagcctgagatggcagtatcctccttgagttcaggggcatccatgagcattttcagttctcaagttttatttgatgagaagattattgatcagactattgacacgaggattaaacttgcatttgcccttgcaagacaatggtttggtgtttatatcactcctgatgcaccgaatgatgagtggctgctggatggtctagctgggtttttgacagatttatttataaaaaagtatttaggaaataatgaagcccgctatcggagatacaaggcaaattgtgccgtttgtagagcagatgatagtggtgcaactgcgctaagctccactgcttcttgtaaggatttgtttggcactcagtgcattggaatatacagcaaaattagatcatggaaatctgtggctatacttcaaatgttggaaaagcagatgggacccgagtctttccgtaaaattttgcaaacaatagtttcgagggctcaagataagacgcgttctctgagatctctcagtactaaggagtttaggcattttgctaataaagttggtaatcttgagcgtccttttctcaaagaattctttcctcgctgggtagaactgtgtggttgtccagtgctgaggatgggcttctcctacaacaaacgaaagaatatggttgaagttgcagttttacgtgggtgcacagaaatgtcggattcaagtgcttcaactgttaatgctaattcagaatctgaaaagcgtgacagtgatagtggatggcctggaatgatgagcatcagagttcatgaacttgatggtacatttgaccatccggttctgccaatggctggagaaacagtccagctgctggaaatacaatgtcattcaaaacttgctgctcgacgctttcagaagcctaaaaagggttcaaagcttgatggagcagatgataatggagatgcaactcctgccctagatatacgctccagtatggaatctccgttgctgtggatgagggcagatccagaaatggaataccttgctgaaattcatttcaatcaacctgtacagatgtggattaatcagttggagaaggacaaagatgttgttgctcaggcacaagcaattgcaatgcttgaatccttacctcagcttccattttctgttgttaatgctcttaataacttcctcattgactccaaggccttctggagagttcgaattgaggctgcctttgcattggctaatacagcatctgaggatacggattgggctggtctactccatttggtgacattctataaaagtcgaaggtttgatgcaaacattggactccccaagccaaatgacttccatgatattcccgaatacttagttcttgaggcaattccacatgctgtagctatggttagagctgctgaccagaaaagcccaagagaggctgttgagtttgtcctacaactgttgaagtacaatgacaacaatgggaactcttattctgatgtgttctggctttcttcattaattcagtctgtcggagaacttgaatttgggcaacagagtattgtccttttatcatctcttcttaagcgtattgatcggcttttgcaatttgacaggttgatgcctagctacaatggtatcttgtcagtcagctgtatcaggtccctgacacatattgccttgaaacttatgggatttgttcctcttgatcgtgtgtttgaactagtaaaaccatttcgcgatatcaaggccatatggcaagttggatttgttcctcttgatcgtgtgtttgaacttgtaaaaccttttcgcgatatcaaggccatatggcaagttagggttgaagcaagcagagcactccttgatcttgaattccattgcaaaggcattgatgcagctttggcattatttatgagatatttagatgaagagccatccttcagaggtcaggtgaagttggctgtgcatgctatgaggttatgcaaggtaagaggtggatctgattgtgaggatgaagttcagagccagactcttgtggctttacttcgcctacttgaaggccagatggcatttaataatatctttcttcgtcaccacgtattctgcatcctacaaatccttgcaggaaggcccccaaccttatatggagtgccaagagatcatagaccattgcttctaggtgatgcagaaggcttacacgtgcagaagaacatttttgctgctttcattccagaaagtaaatcccaggaaccaccttctgaccatgcacatgatggtgtgtctgttcccgaaacttccagagacgttttgggtgttccagaagctaccatggatgggttgtccgctccagccccaggagcttttagagatgggttgtccattgcagctccagaagtatccatggatgggttgtccgctccagccccaggagcttttagagatgggttgtccattgcagctccagaagtatccatggatgggttgtcagttccagctccagaagctcttagagatgggttggcctttgcagaagcttccaaggaagattttggtgcttcagaacctcccaatgatgctttcattggtttgggtcctttagaacctttcagtgatgatttggttacagtggtagatccttccgctggtggtttgggtgctgtggaaacttccaaggatgtcatggcagcagttccggaacctcccaaggatatcttgatagttcctgaaccttccaaggatatcttgatagctcctgatcgttccatggataacttggcagttcgtgaaccttccaaggaagcagataccatttccaacagtcacagacggaagttgccggttgttaagatcagggtaaaaaaatctgctactaatagcagagcagaagaaggcgataatcaaactgttgagagatctcaaggtgggcatgctagcagttcagtttctgtggatgcacctcacaggaatttccgagaagttgcgagccttagcaaccaaaactttgaggaagttaactcttgtcatgatcttggatctcggatgactgccagcatcggtagtgcaaaatttgcaagtgatgctgatgataatataggaagggaattgcagtgcactgctgattcaagcaaagtttctgtacagcctcgacccgatatttcatcacctagcttcatgcaagataaccaagatgcagatgtgcagaagtacgcaagccttcaggctctttcagctccgaggaatgatcttaatggtggttcttttggcacagtggatgtactgcctcgtgggaaggaaaaggagagaaagaaagacaaggacaagaaaaggaagcgggataaaggccatcgagatgatcccgagtatattgagcgaaaacgattaaagaaggaaaaaaggcagaaagagaaggagctgtcgaagttgttgagtgacagtgccaaagtaccttccctggacgtaccaagtaaggaggtacttggaatgaagcctgcaactttgcaactgaaaccagttgagcccagtagatcaaacaaattagtcctcgcaactgttgaagcgaccaggcccgaggcatcaggaactaaaaccatcacccccaagattcgtattaaaaccaaatttcgaactctggacaaatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

Peptidase_M1

Protein Analysis

1520

Amino Acids

168.87

Weight (kDa)

6.09

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73960 AT1G73960
fragaria_vesca	FvH4_5g12730
malus_domestica	MD06G1210800.v1.1 MD06G1211000.v1.1 MD14G1221500.v1.1 MD14G1221600.v1.1
prunus_persica	Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1 Prupe.5G217000_v2.0.a1
pyrus_communis	pycom06g18830 pycom14g18330
rosa_chinensis	RchiOBHm_Chr7g0184581
rosa_laevigata	RLG00000003716 RLG00000004966 RLG00000020303
rosa_multiflora	Rmu_ssc0000289.1_g000035
rosa_roxburghii	Rroxscaffold_3G00269500 Rroxscaffold_7G00196400
rosa_rugosa	Rorug06G0007300 Rorug07G0060900
rosa_samantha	Rh2BG075800 Rh2CG077900 Rh5DG337600 Rh5DG495400 Rh6AG042200 Rh6AG254600 Rh7AG079100 Rh7BG068200 Rh7BG189600 Rh7CG069000 Rh7DG068300 Rh7DG191200 Rh7DG191900
rosa_wichuraiana	Rw7G005620 Rw7G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1166
AarI	CACCTGC	1 cut(s)	400
AatII	GACGTC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	400
AccB1I	GGYRCC	2 cut(s)	139, 349
AccB7I	CCANNNNNTGG	2 cut(s)	1766, 1786
AccBSI	CCGCTC	2 cut(s)	3266, 3338
AccI	GTMKAC	2 cut(s)	201, 2197
AccII	CGCG	5 cut(s)	170, 308, 1432, 2661, 2733
AccIII	TCCGGA	3 cut(s)	50, 787, 3613
AclWI	GGATC	6 cut(s)	692, 1934, 2926, 3548, 3961, 4268
AcoI	YGGCCR	1 cut(s)	309
AcuI	CTGAAG	5 cut(s)	149, 474, 2845, 3462, 4121
AcvI	CACGTG	1 cut(s)	3121
AcyI	GRCGYC	2 cut(s)	33, 284
AdeI	CACNNNGTG	1 cut(s)	1299
AflII	CTTAAG	1 cut(s)	2504
AflIII	ACRYGT	3 cut(s)	816, 1430, 3118
AhdI	GACNNNNNGTC	1 cut(s)	59
AhlI	ACTAGT	1 cut(s)	2644
AjnI	CCWGG	7 cut(s)	678, 1699, 3165, 3274, 3346, 4371, 4481
AjuI	GAANNNNNNNTTGG	6 cut(s)	461, 493, 2451, 2483, 3482, 3514
Alw21I	GWGCWC	6 cut(s)	278, 296, 748, 1622, 2779, 4034
Alw26I	GTCTC	2 cut(s)	506, 3216
Alw44I	GTGCAC	2 cut(s)	1618, 4030
AlwI	GGATC	6 cut(s)	692, 1934, 2926, 3548, 3961, 4268
AlwNI	CAGNNNCTG	5 cut(s)	685, 1670, 1786, 2174, 3866
Ama87I	CYCGRG	3 cut(s)	1376, 4277, 4487
Aor13HI	TCCGGA	3 cut(s)	50, 787, 3613
ApaLI	GTGCAC	2 cut(s)	1618, 4030
ArsI	GACNNNNNNTTYG	2 cut(s)	702, 734
AseI	ATTAAT	3 cut(s)	366, 1998, 2441
Asp700I	GAANNNNTTC	2 cut(s)	783, 1518
AspLEI	GCGC	1 cut(s)	1258
AspS9I	GGNCC	8 cut(s)	53, 439, 790, 1373, 2583, 3051, 3512, 4485
AsuHPI	GGTGA	8 cut(s)	279, 292, 2221, 2884, 3005, 3113, 4074, 4504
AsuII	TTCGAA	2 cut(s)	2137, 4543
AsuNHI	GCTAGC	1 cut(s)	3851
AvaI	CYCGRG	3 cut(s)	1376, 4277, 4487
AvaII	GGWCC	5 cut(s)	53, 790, 1373, 2583, 3512
BaeGI	GKGCMC	2 cut(s)	1622, 4034
BaeI	ACNNNNGTAYC	2 cut(s)	2542, 2575
BanI	GGYRCC	2 cut(s)	139, 349
BanII	GRGCYC	4 cut(s)	278, 296, 1420, 4440
BauI	CACGAG	2 cut(s)	1045, 4203
BbrPI	CACGTG	1 cut(s)	3121
Bbv12I	GWGCWC	6 cut(s)	278, 296, 748, 1622, 2779, 4034
BbvCI	CCTCAGC	2 cut(s)	1556, 2067
BceAI	ACGGC	2 cut(s)	220, 1208
BciT130I	CCWGG	7 cut(s)	680, 1701, 3167, 3276, 3348, 4373, 4483
BciVI	GTATCC	4 cut(s)	970, 2173, 3328, 3400
BclI	TGATCA	1 cut(s)	1030
BcoDI	GTCTC	2 cut(s)	506, 3216
BcuI	ACTAGT	1 cut(s)	2644
BfaI	CTAG	9 cut(s)	728, 899, 1139, 1892, 2547, 2645, 3098, 3852, 4086
BfmI	CTRYAG	3 cut(s)	721, 855, 2316
BfrI	CTTAAG	1 cut(s)	2504
BfuAI	ACCTGC	1 cut(s)	400
BfuI	GTATCC	4 cut(s)	970, 2173, 3328, 3400
BglII	AGATCT	2 cut(s)	1442, 3833
BlpI	GCTNAGC	1 cut(s)	1259
BmcAI	AGTACT	2 cut(s)	227, 1453
Bme1390I	CCNGG	7 cut(s)	680, 1701, 3167, 3276, 3348, 4373, 4483
Bme18I	GGWCC	5 cut(s)	53, 790, 1373, 2583, 3512
BmeRI	GACNNNNNGTC	1 cut(s)	59
BmeT110I	CYCGRG	3 cut(s)	1376, 4277, 4487
BmgT120I	GGNCC	8 cut(s)	53, 439, 790, 1373, 2583, 3051, 3512, 4485
BmrFI	CCNGG	7 cut(s)	680, 1701, 3167, 3276, 3348, 4373, 4483
BmrI	ACTGGG	1 cut(s)	4434
BmtI	GCTAGC	1 cut(s)	3855
BmuI	ACTGGG	1 cut(s)	4434
BoxI	GACNNNNGTC	1 cut(s)	1378
BplI	GAGNNNNNCTC	2 cut(s)	2935, 2967
Bpu10I	CCTNAGC	4 cut(s)	1556, 2031, 2067, 3908
Bpu1102I	GCTNAGC	1 cut(s)	1259
Bpu14I	TTCGAA	2 cut(s)	2137, 4543
BpuEI	CTTGAG	7 cut(s)	356, 987, 988, 1404, 1514, 2318, 3822
BsaAI	YACGTR	3 cut(s)	1613, 3019, 3121
BsaBI	GATNNNNATC	1 cut(s)	1712
BsaHI	GRCGYC	2 cut(s)	33, 284
BsaWI	WCCGGW	4 cut(s)	50, 787, 1750, 3613
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 1761, 1791
Bse118I	RCCGGY	2 cut(s)	311, 3757
Bse1I	ACTGG	6 cut(s)	275, 737, 1550, 1905, 4430, 4440
Bse3DI	GCAATG	6 cut(s)	667, 2055, 2797, 3089, 3300, 3372
Bse8I	GATNNNNATC	1 cut(s)	1712
BseAI	TCCGGA	3 cut(s)	50, 787, 3613
BseBI	CCWGG	7 cut(s)	680, 1701, 3167, 3276, 3348, 4373, 4483
BseJI	GATNNNNATC	1 cut(s)	1712
BseMI	GCAATG	6 cut(s)	667, 2055, 2797, 3089, 3300, 3372
BseNI	ACTGG	6 cut(s)	275, 737, 1550, 1905, 4430, 4440
BseSI	GKGCMC	2 cut(s)	1622, 4034
BseX3I	CGGCCG	1 cut(s)	309
BseYI	CCCAGC	2 cut(s)	1142, 1527
BsgI	GTGCAG	2 cut(s)	3143, 4139
Bsh1236I	CGCG	5 cut(s)	170, 308, 1432, 2661, 2733
Bsh1285I	CGRYCG	1 cut(s)	312
BshNI	GGYRCC	2 cut(s)	139, 349
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	6 cut(s)	278, 296, 748, 1622, 2779, 4034
BsiHKCI	CYCGRG	3 cut(s)	1376, 4277, 4487
BsiSI	CCGG	7 cut(s)	51, 143, 312, 788, 1751, 3614, 3758
BslFI	GGGAC	3 cut(s)	281, 1386, 2569
BsmAI	GTCTC	2 cut(s)	506, 3216
BsmBI	CGTCTC	1 cut(s)	3216
BsmFI	GGGAC	3 cut(s)	281, 1386, 2569
BsoBI	CYCGRG	3 cut(s)	1376, 4277, 4487
Bsp119I	TTCGAA	2 cut(s)	2137, 4543
Bsp1286I	GDGCHC	8 cut(s)	278, 296, 748, 1420, 1622, 2779, 4034, 4440
Bsp13I	TCCGGA	3 cut(s)	50, 787, 3613
Bsp1407I	TGTACA	2 cut(s)	1984, 4057
Bsp1720I	GCTNAGC	1 cut(s)	1259
Bsp19I	CCATGG	4 cut(s)	3249, 3321, 3393, 3684
Bsp68I	TCGCGA	2 cut(s)	2661, 2733
BspEI	TCCGGA	3 cut(s)	50, 787, 3613
BspFNI	CGCG	5 cut(s)	170, 308, 1432, 2661, 2733
BspHI	TCATGA	2 cut(s)	1723, 3943
BspMI	ACCTGC	1 cut(s)	400
BspOI	GCTAGC	1 cut(s)	3855
BspPI	GGATC	6 cut(s)	692, 1934, 2926, 3548, 3961, 4268
BspQI	GCTCTTC	1 cut(s)	2844
BspT104I	TTCGAA	2 cut(s)	2137, 4543
BspT107I	GGYRCC	2 cut(s)	139, 349
BspTI	CTTAAG	1 cut(s)	2504
BsrBI	CCGCTC	2 cut(s)	3266, 3338
BsrDI	GCAATG	6 cut(s)	667, 2055, 2797, 3089, 3300, 3372
BsrFI	RCCGGY	2 cut(s)	311, 3757
BsrGI	TGTACA	2 cut(s)	1984, 4057
BsrI	ACTGG	6 cut(s)	275, 737, 1550, 1905, 4430, 4440
BssAI	RCCGGY	2 cut(s)	311, 3757
BssNI	GRCGYC	2 cut(s)	33, 284
BssSI	CACGAG	2 cut(s)	1045, 4203
Bst2BI	CACGAG	2 cut(s)	1045, 4203
Bst2UI	CCWGG	7 cut(s)	680, 1701, 3167, 3276, 3348, 4373, 4483
Bst6I	CTCTTC	2 cut(s)	2505, 2844
BstACI	GRCGYC	2 cut(s)	33, 284
BstAFI	CTTAAG	1 cut(s)	2504
BstAPI	GCANNNNNTGC	5 cut(s)	1220, 1299, 1886, 3989, 3998
BstAUI	TGTACA	2 cut(s)	1984, 4057
BstBAI	YACGTR	3 cut(s)	1613, 3019, 3121
BstBI	TTCGAA	2 cut(s)	2137, 4543
BstDSI	CCRYGG	5 cut(s)	868, 3249, 3321, 3393, 3684
BstFNI	CGCG	5 cut(s)	170, 308, 1432, 2661, 2733
BstHHI	GCGC	1 cut(s)	1258
BstMAI	GTCTC	2 cut(s)	506, 3216
BstMCI	CGRYCG	1 cut(s)	312
BstNI	CCWGG	7 cut(s)	680, 1701, 3167, 3276, 3348, 4373, 4483
BstNSI	RCATGY	4 cut(s)	820, 2315, 2891, 3851
BstPAI	GACNNNNGTC	1 cut(s)	1378
BstSCI	CCNGG	7 cut(s)	678, 1699, 3165, 3274, 3346, 4371, 4481
BstSFI	CTRYAG	3 cut(s)	721, 855, 2316
BstSLI	GKGCMC	2 cut(s)	1622, 4034
BstUI	CGCG	5 cut(s)	170, 308, 1432, 2661, 2733
BstX2I	RGATCY	6 cut(s)	1442, 1939, 2918, 3553, 3833, 3953
BstXI	CCANNNNNNTGG	1 cut(s)	800
BstYI	RGATCY	6 cut(s)	1442, 1939, 2918, 3553, 3833, 3953
BstZI	CGGCCG	1 cut(s)	309
BsuI	GTATCC	4 cut(s)	970, 2173, 3328, 3400
BtgI	CCRYGG	5 cut(s)	868, 3249, 3321, 3393, 3684
BtsI	GCAGTG	3 cut(s)	1266, 4032, 4034
BtuMI	TCGCGA	2 cut(s)	2661, 2733
BveI	ACCTGC	1 cut(s)	400
CaiI	CAGNNNCTG	5 cut(s)	685, 1670, 1786, 2174, 3866
CciI	TCATGA	2 cut(s)	1723, 3943
CfoI	GCGC	1 cut(s)	1258
Cfr10I	RCCGGY	2 cut(s)	311, 3757
Cfr13I	GGNCC	8 cut(s)	53, 439, 790, 1373, 2583, 3051, 3512, 4485
CseI	GACGC	5 cut(s)	41, 314, 1438, 1487, 1830
CsiI	ACCWGGT	1 cut(s)	678
DraIII	CACNNNGTG	1 cut(s)	1299
DriI	GACNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	309
EagI	CGGCCG	1 cut(s)	309
Eam1104I	CTCTTC	2 cut(s)	2505, 2844
Eam1105I	GACNNNNNGTC	1 cut(s)	59
EarI	CTCTTC	2 cut(s)	2505, 2844
EciI	GGCGGA	2 cut(s)	53, 690
Ecl136II	GAGCTC	2 cut(s)	276, 294
EclXI	CGGCCG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	2123
Eco24I	GRGCYC	4 cut(s)	278, 296, 1420, 4440
Eco32I	GATATC	5 cut(s)	756, 2665, 2737, 3631, 3661
Eco47I	GGWCC	5 cut(s)	53, 790, 1373, 2583, 3512
Eco52I	CGGCCG	1 cut(s)	309
Eco53kI	GAGCTC	2 cut(s)	276, 294
Eco57I	CTGAAG	5 cut(s)	149, 474, 2845, 3462, 4121
Eco72I	CACGTG	1 cut(s)	3121
Eco88I	CYCGRG	3 cut(s)	1376, 4277, 4487
EcoICRI	GAGCTC	2 cut(s)	276, 294
EcoO109I	RGGNCCY	4 cut(s)	1373, 2583, 3051, 3512
EcoRI	GAATTC	2 cut(s)	1514, 2792
EcoRII	CCWGG	7 cut(s)	678, 1699, 3165, 3274, 3346, 4371, 4481
EcoRV	GATATC	5 cut(s)	756, 2665, 2737, 3631, 3661
EcoT38I	GRGCYC	4 cut(s)	278, 296, 1420, 4440
Esp3I	CGTCTC	1 cut(s)	3216
FalI	AAGNNNNNCTT	4 cut(s)	3617, 3649, 3647, 3679
FaqI	GGGAC	3 cut(s)	281, 1386, 2569
FauI	CCCGC	2 cut(s)	1202, 4245
FauNDI	CATATG	3 cut(s)	715, 2675, 2747
FbaI	TGATCA	1 cut(s)	1030
FblI	GTMKAC	2 cut(s)	201, 2197
FriOI	GRGCYC	4 cut(s)	278, 296, 1420, 4440
FspBI	CTAG	9 cut(s)	728, 899, 1139, 1892, 2547, 2645, 3098, 3852, 4086
GlaI	GCGC	1 cut(s)	1257
GsaI	CCCAGC	2 cut(s)	1146, 1531
HapII	CCGG	7 cut(s)	51, 143, 312, 788, 1751, 3614, 3758
HgaI	GACGC	5 cut(s)	41, 314, 1438, 1487, 1830
HhaI	GCGC	1 cut(s)	1258
Hin1I	GRCGYC	2 cut(s)	33, 284
Hin6I	GCGC	1 cut(s)	1256
HinP1I	GCGC	1 cut(s)	1256
HincII	GTYRAC	2 cut(s)	202, 3934
HindII	GTYRAC	2 cut(s)	202, 3934
HindIII	AAGCTT	4 cut(s)	667, 842, 1850, 3453
HpaI	GTTAAC	1 cut(s)	3934
HpaII	CCGG	7 cut(s)	51, 143, 312, 788, 1751, 3614, 3758
HphI	GGTGA	8 cut(s)	279, 292, 2221, 2884, 3005, 3113, 4074, 4504
Hpy99I	CGWCG	8 cut(s)	32, 35, 62, 108, 203, 206, 217, 1824
HpyCH4IV	ACGT	6 cut(s)	284, 1612, 3018, 3120, 3225, 4377
HpySE526I	ACGT	6 cut(s)	284, 1612, 3018, 3120, 3225, 4377
Hsp92I	GRCGYC	2 cut(s)	33, 284
HspAI	GCGC	1 cut(s)	1256
KflI	GGGWCCC	1 cut(s)	1373
Kpn2I	TCCGGA	3 cut(s)	50, 787, 3613
Ksp22I	TGATCA	1 cut(s)	1030
KspAI	GTTAAC	1 cut(s)	3934
LguI	GCTCTTC	1 cut(s)	2844
MabI	ACCWGGT	1 cut(s)	678
MaeI	CTAG	9 cut(s)	728, 899, 1139, 1892, 2547, 2645, 3098, 3852, 4086
MaeII	ACGT	6 cut(s)	284, 1612, 3018, 3120, 3225, 4377
MbiI	CCGCTC	2 cut(s)	3266, 3338
MfeI	CAATTG	1 cut(s)	2043
MflI	RGATCY	6 cut(s)	1442, 1939, 2918, 3553, 3833, 3953
MhlI	GDGCHC	8 cut(s)	278, 296, 748, 1420, 1622, 2779, 4034, 4440
MluI	ACGCGT	1 cut(s)	1430
MlyI	GAGTC	4 cut(s)	1388, 2108, 2244, 2944
MmeI	TCCRAC	6 cut(s)	1338, 1611, 1986, 2434, 2665, 3759
MroI	TCCGGA	3 cut(s)	50, 787, 3613
MroXI	GAANNNNTTC	2 cut(s)	783, 1518
MslI	CAYNNNNRTG	4 cut(s)	1625, 3189, 3195, 4269
MspA1I	CMGCKG	3 cut(s)	1783, 2574, 3563
MspCI	CTTAAG	1 cut(s)	2504
MspI	CCGG	7 cut(s)	51, 143, 312, 788, 1751, 3614, 3758
MspR9I	CCNGG	7 cut(s)	680, 1701, 3167, 3276, 3348, 4373, 4483
MunI	CAATTG	1 cut(s)	2043
MvaI	CCWGG	7 cut(s)	680, 1701, 3167, 3276, 3348, 4373, 4483
MvnI	CGCG	5 cut(s)	170, 308, 1432, 2661, 2733
NcoI	CCATGG	4 cut(s)	3249, 3321, 3393, 3684
NdeI	CATATG	3 cut(s)	715, 2675, 2747
NheI	GCTAGC	1 cut(s)	3851
NmuCI	GTSAC	7 cut(s)	280, 285, 1679, 2209, 3011, 3740, 4349
NruI	TCGCGA	2 cut(s)	2661, 2733
NspI	RCATGY	4 cut(s)	820, 2315, 2891, 3851
NspV	TTCGAA	2 cut(s)	2137, 4543
PaeI	GCATGC	2 cut(s)	2891, 3851
PagI	TCATGA	2 cut(s)	1723, 3943
PaqCI	CACCTGC	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	2123
PciI	ACATGT	1 cut(s)	816
PciSI	GCTCTTC	1 cut(s)	2844
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdmI	GAANNNNTTC	2 cut(s)	783, 1518
PfeI	GAWTC	8 cut(s)	251, 643, 1634, 1667, 1913, 2057, 4040, 4522
PflMI	CCANNNNNTGG	2 cut(s)	1766, 1786
PleI	GAGTC	4 cut(s)	1387, 2108, 2244, 2944
PmaCI	CACGTG	1 cut(s)	3121
PmlI	CACGTG	1 cut(s)	3121
PpsI	GAGTC	4 cut(s)	1387, 2108, 2244, 2944
Ppu21I	YACGTR	3 cut(s)	1613, 3019, 3121
PpuMI	RGGWCCY	3 cut(s)	1373, 2583, 3512
PscI	ACATGT	1 cut(s)	816
PshAI	GACNNNNGTC	1 cut(s)	1378
PshBI	ATTAAT	3 cut(s)	366, 1998, 2441
PsiI	TTATAA	1 cut(s)	1166
Psp124BI	GAGCTC	2 cut(s)	278, 296
Psp5II	RGGWCCY	3 cut(s)	1373, 2583, 3512
Psp6I	CCWGG	7 cut(s)	678, 1699, 3165, 3274, 3346, 4371, 4481
PspCI	CACGTG	1 cut(s)	3121
PspFI	CCCAGC	2 cut(s)	1142, 1527
PspGI	CCWGG	7 cut(s)	678, 1699, 3165, 3274, 3346, 4371, 4481
PspPI	GGNCC	8 cut(s)	53, 439, 790, 1373, 2583, 3051, 3512, 4485
PspPPI	RGGWCCY	3 cut(s)	1373, 2583, 3512
PstNI	CAGNNNCTG	5 cut(s)	685, 1670, 1786, 2174, 3866
PsuI	RGATCY	6 cut(s)	1442, 1939, 2918, 3553, 3833, 3953
PvuII	CAGCTG	2 cut(s)	1783, 2574
RruI	TCGCGA	2 cut(s)	2661, 2733
RseI	CAYNNNNRTG	4 cut(s)	1625, 3189, 3195, 4269
SacI	GAGCTC	2 cut(s)	278, 296
SalI	GTCGAC	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	2844
Sau96I	GGNCC	8 cut(s)	53, 439, 790, 1373, 2583, 3051, 3512, 4485
ScaI	AGTACT	2 cut(s)	227, 1453
SchI	GAGTC	4 cut(s)	1388, 2108, 2244, 2944
ScrFI	CCNGG	7 cut(s)	680, 1701, 3167, 3276, 3348, 4373, 4483
SduI	GDGCHC	8 cut(s)	278, 296, 748, 1420, 1622, 2779, 4034, 4440
SexAI	ACCWGGT	1 cut(s)	678
SfcI	CTRYAG	3 cut(s)	721, 855, 2316
SfuI	TTCGAA	2 cut(s)	2137, 4543
SgrDI	CGTCGACG	1 cut(s)	200
SinI	GGWCC	5 cut(s)	53, 790, 1373, 2583, 3512
SmiMI	CAYNNNNRTG	4 cut(s)	1625, 3189, 3195, 4269
SmlI	CTYRAG	8 cut(s)	335, 967, 1002, 1419, 1493, 2297, 2504, 3837
SmoI	CTYRAG	8 cut(s)	335, 967, 1002, 1419, 1493, 2297, 2504, 3837
SpeI	ACTAGT	1 cut(s)	2644
SphI	GCATGC	2 cut(s)	2891, 3851
SseBI	AGGCCT	1 cut(s)	2123
SspMI	CTAG	9 cut(s)	728, 899, 1139, 1892, 2547, 2645, 3098, 3852, 4086
SstI	GAGCTC	2 cut(s)	278, 296
StuI	AGGCCT	1 cut(s)	2123
StyD4I	CCNGG	7 cut(s)	678, 1699, 3165, 3274, 3346, 4371, 4481
TaiI	ACGT	6 cut(s)	287, 1615, 3021, 3123, 3228, 4380
TatI	WGTACW	7 cut(s)	225, 400, 1451, 1984, 2388, 4057, 4195
TauI	GCSGC	3 cut(s)	311, 440, 565
TfiI	GAWTC	8 cut(s)	251, 643, 1634, 1667, 1913, 2057, 4040, 4522
TseFI	GTSAC	7 cut(s)	280, 285, 1679, 2209, 3011, 3740, 4349
Tsp45I	GTSAC	7 cut(s)	280, 285, 1679, 2209, 3011, 3740, 4349
TspGWI	ACGGA	7 cut(s)	187, 230, 655, 1376, 1908, 2198, 3763
Van91I	CCANNNNNTGG	2 cut(s)	1766, 1786
Vha464I	CTTAAG	1 cut(s)	2504
VneI	GTGCAC	2 cut(s)	1618, 4030
VpaK11BI	GGWCC	5 cut(s)	53, 790, 1373, 2583, 3512
VspI	ATTAAT	3 cut(s)	366, 1998, 2441
XceI	RCATGY	4 cut(s)	820, 2315, 2891, 3851
XcmI	CCANNNNNNNNNTGG	4 cut(s)	3191, 3226, 3598, 3691
XmiI	GTMKAC	2 cut(s)	201, 2197
XmnI	GAANNNNTTC	2 cut(s)	783, 1518
XspI	CTAG	9 cut(s)	728, 899, 1139, 1892, 2547, 2645, 3098, 3852, 4086
ZraI	GACGTC	1 cut(s)	285
ZrmI	AGTACT	2 cut(s)	227, 1453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.