MD09G1275600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0002872
Physical Location & Seq
Forward (+)
35319324 .. 35319684
361 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1275600.v1.1.491

Sequence Viewer

Length: 246 bp
ATGAGCACATACCCATCACCACACCACCATCTCCGACGTCAACGGCGTCGTCATCATCATCATCAGTTCGTTTTCTCTCTCTCTCAGTTGCTGCGAGGACAGCAAAAACCAGTACTCGAGCTCCGACACAAACCGACGCCTTTCGAGGCCATTTCCGGCCAAACCACGGCGGGTTGGCCGGCGTGCAAGTTTCCGGCGAGTCCGACGGCTTTCGAGGCGTTTTCCGGCCAAACCACGGCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.24

Weight (kDa)

11.31

Isoelectric Point (pI)

88.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 40
AciI CCGC 1 cut(s) 170
AcoI YGGCCR 3 cut(s) 157, 176, 226
AcyI GRCGYC 3 cut(s) 37, 46, 137
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 166, 235
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw21I GWGCWC 2 cut(s) 8, 123
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 4 cut(s) 147, 157, 176, 226
ApeKI GCWGC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 9
AvaI CYCGRG 1 cut(s) 116
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 8, 123
BbvI GCAGC 1 cut(s) 78
BccI CCATC 2 cut(s) 22, 36
BceAI ACGGC 3 cut(s) 59, 183, 222
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
BmcAI AGTACT 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 116
BsaHI GRCGYC 3 cut(s) 37, 46, 137
BsaJI CCNNGG 2 cut(s) 165, 234
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 235
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 165, 234
BseLI CCNNNNNNNGG 2 cut(s) 166, 235
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 78
BshFI GGCC 4 cut(s) 149, 159, 178, 228
BsiHKAI GWGCWC 2 cut(s) 8, 123
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 4 cut(s) 156, 179, 194, 225
BslI CCNNNNNNNGG 2 cut(s) 166, 235
BsnI GGCC 4 cut(s) 149, 159, 178, 228
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 8, 123
BspACI CCGC 1 cut(s) 170
BspANI GGCC 4 cut(s) 149, 159, 178, 228
BspCNI CTCAG 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 165, 234
BssNI GRCGYC 3 cut(s) 37, 46, 137
BstACI GRCGYC 3 cut(s) 37, 46, 137
BstC8I GCNNGC 2 cut(s) 180, 184
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 2 cut(s) 165, 234
BstMWI GCNNNNNNNGC 2 cut(s) 100, 215
BstV1I GCAGC 1 cut(s) 78
BsuRI GGCC 4 cut(s) 149, 159, 178, 228
BtgI CCRYGG 2 cut(s) 165, 234
Cac8I GCNNGC 2 cut(s) 180, 184
CaiI CAGNNNCTG 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 178
CseI GACGC 2 cut(s) 35, 145
Csp6I GTAC 1 cut(s) 113
CviJI RGCY 6 cut(s) 121, 149, 159, 178, 209, 228
CviKI_1 RGCY 6 cut(s) 121, 149, 159, 178, 209, 228
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 1 cut(s) 84
EaeI YGGCCR 3 cut(s) 157, 176, 226
Ecl136II GAGCTC 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 123
FaiI YATR 1 cut(s) 10
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 92
HaeIII GGCC 4 cut(s) 149, 159, 178, 228
HapII CCGG 4 cut(s) 156, 179, 194, 225
HgaI GACGC 2 cut(s) 35, 145
Hin1I GRCGYC 3 cut(s) 37, 46, 137
HincII GTYRAC 1 cut(s) 41
HindII GTYRAC 1 cut(s) 41
HinfI GANTC 1 cut(s) 199
HpaII CCGG 4 cut(s) 156, 179, 194, 225
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 3 cut(s) 35, 125, 204
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 4 cut(s) 39, 51, 139, 208
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 215
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 37
Hsp92I GRCGYC 3 cut(s) 37, 46, 137
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 5 cut(s) 123, 169, 192, 207, 238
Lsp1109I GCAGC 1 cut(s) 78
MaeII ACGT 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 8, 123
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 3 cut(s) 58, 148, 227
MnlI CCTC 3 cut(s) 89, 139, 208
MroNI GCCGGC 1 cut(s) 178
MspI CCGG 4 cut(s) 156, 179, 194, 225
MwoI GCNNNNNNNGC 2 cut(s) 100, 215
NaeI GCCGGC 1 cut(s) 180
NgoMIV GCCGGC 1 cut(s) 178
PaeR7I CTCGAG 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 43
PdiI GCCGGC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 123
PspXI VCTCGAGB 1 cut(s) 116
PstNI CAGNNNCTG 1 cut(s) 91
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SacI GAGCTC 1 cut(s) 123
SatI GCNGC 1 cut(s) 92
ScaI AGTACT 1 cut(s) 114
SchI GAGTC 1 cut(s) 208
SduI GDGCHC 2 cut(s) 8, 123
SetI ASST 2 cut(s) 40, 123
Sfr274I CTCGAG 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SsiI CCGC 1 cut(s) 170
SstI GAGCTC 1 cut(s) 123
TaiI ACGT 1 cut(s) 40
TaqI TCGA 3 cut(s) 117, 144, 213
TatI WGTACW 1 cut(s) 112
TseI GCWGC 1 cut(s) 91
XhoI CTCGAG 1 cut(s) 116
ZraI GACGTC 1 cut(s) 38
ZrmI AGTACT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.