pycom14g05870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0002872
Physical Location & Seq
Forward (+)
5719109 .. 5720045
937 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g05870.1

Sequence Viewer

Length: 225 bp
ATGCCCACACCTATACACGAAGAAACCACCTCGGAGACATTTCCCAGTTTTCCGGCGAGCACCGCCCATTTCGAGGCAATTTCCGGCCAAACCACGGTGAGTTGGCCGGCGTGCAAGTTTCCGGCGGACACCCGTGGCTTCCAGGCTGTTTTCCGGCCAACTCCGGCCACGATGACGGGAACCAAGGGGGCGATTATCTGTGGTGTTTCTTTCTTCGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

7.92

Weight (kDa)

6.7

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 63, 125
AcoI YGGCCR 4 cut(s) 85, 104, 155, 165
AfiI CCNNNNNNNGG 2 cut(s) 73, 94
AjnI CCWGG 1 cut(s) 141
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 29
AoxI GGCC 4 cut(s) 85, 104, 155, 165
AsuHPI GGTGA 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 39
BsaJI CCNNGG 4 cut(s) 30, 93, 133, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 94
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 4 cut(s) 30, 93, 133, 183
BseLI CCNNNNNNNGG 2 cut(s) 73, 94
BseNI ACTGG 1 cut(s) 45
BshFI GGCC 4 cut(s) 87, 106, 157, 167
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 6 cut(s) 53, 84, 107, 122, 154, 164
BslI CCNNNNNNNGG 2 cut(s) 73, 94
BsmAI GTCTC 1 cut(s) 29
BsnI GGCC 4 cut(s) 87, 106, 157, 167
Bsp1286I GDGCHC 1 cut(s) 62
BspACI CCGC 2 cut(s) 63, 125
BspANI GGCC 4 cut(s) 87, 106, 157, 167
BspLI GGNNCC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 4 cut(s) 30, 93, 133, 183
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 3 cut(s) 58, 108, 112
BstDSI CCRYGG 2 cut(s) 93, 133
BstMAI GTCTC 1 cut(s) 29
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BsuRI GGCC 4 cut(s) 87, 106, 157, 167
BtgI CCRYGG 2 cut(s) 93, 133
Cac8I GCNNGC 3 cut(s) 58, 108, 112
Cfr10I RCCGGY 1 cut(s) 106
CviJI RGCY 6 cut(s) 87, 106, 138, 146, 157, 167
CviKI_1 RGCY 6 cut(s) 87, 106, 138, 146, 157, 167
EaeI YGGCCR 4 cut(s) 85, 104, 155, 165
EciI GGCGGA 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaiI YATR 1 cut(s) 14
FspBI CTAG 1 cut(s) 219
HaeIII GGCC 4 cut(s) 87, 106, 157, 167
HapII CCGG 6 cut(s) 53, 84, 107, 122, 154, 164
HpaII CCGG 6 cut(s) 53, 84, 107, 122, 154, 164
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
KroI GCCGGC 1 cut(s) 106
KroNI GCCGGC 1 cut(s) 108
LpnPI CCDG 9 cut(s) 58, 66, 97, 120, 128, 135, 155, 167, 177
MaeI CTAG 1 cut(s) 219
MboII GAAGA 2 cut(s) 32, 205
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 78
MnlI CCTC 2 cut(s) 40, 67
MroNI GCCGGC 1 cut(s) 106
MspI CCGG 6 cut(s) 53, 84, 107, 122, 154, 164
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 62
NaeI GCCGGC 1 cut(s) 108
NgoMIV GCCGGC 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 62
SetI ASST 2 cut(s) 13, 32
Sse9I AATT 1 cut(s) 78
SsiI CCGC 2 cut(s) 63, 125
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 78
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.