MD10G1309300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0002872
Physical Location & Seq
Forward (+)
39422202 .. 39423255
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1309300.v1.1.491

Sequence Viewer

Length: 168 bp
ATGACACGGAGTAAGCTCCGGCGAGCACCGCCCCTTTCGAGGCCATTTCCGGCCAAACCACGGCGAGTTGGCCGGCGTTTAAGTTTCCGGCGAGTCCGACGGCTTTCGAGGAATTTTCCGGCCAAACCACGGCGAGTTAGACGTCGTGTGAGGGGCAATTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.83

Weight (kDa)

12.0

Isoelectric Point (pI)

125.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 145
AciI CCGC 1 cut(s) 29
AcoI YGGCCR 3 cut(s) 51, 70, 120
AcsI RAATTY 1 cut(s) 112
AcyI GRCGYC 1 cut(s) 142
AfiI CCNNNNNNNGG 3 cut(s) 39, 60, 129
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw21I GWGCWC 1 cut(s) 28
AoxI GGCC 4 cut(s) 41, 51, 70, 120
ApoI RAATTY 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 28
BceAI ACGGC 3 cut(s) 77, 116, 146
BsaHI GRCGYC 1 cut(s) 142
BsaJI CCNNGG 2 cut(s) 59, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 60, 129
Bse118I RCCGGY 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 59, 128
BseLI CCNNNNNNNGG 3 cut(s) 39, 60, 129
BshFI GGCC 4 cut(s) 43, 53, 72, 122
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 5 cut(s) 19, 50, 73, 88, 119
BslI CCNNNNNNNGG 3 cut(s) 39, 60, 129
BsnI GGCC 4 cut(s) 43, 53, 72, 122
Bsp1286I GDGCHC 1 cut(s) 28
BspACI CCGC 1 cut(s) 29
BspANI GGCC 4 cut(s) 43, 53, 72, 122
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 59, 128
BssNI GRCGYC 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 24, 74
BstDSI CCRYGG 2 cut(s) 59, 128
BstMWI GCNNNNNNNGC 1 cut(s) 28
BsuRI GGCC 4 cut(s) 43, 53, 72, 122
BtgI CCRYGG 2 cut(s) 59, 128
Cac8I GCNNGC 2 cut(s) 24, 74
Cfr10I RCCGGY 1 cut(s) 72
CviJI RGCY 6 cut(s) 16, 43, 53, 72, 103, 122
CviKI_1 RGCY 6 cut(s) 16, 43, 53, 72, 103, 122
EaeI YGGCCR 3 cut(s) 51, 70, 120
HaeIII GGCC 4 cut(s) 43, 53, 72, 122
HapII CCGG 5 cut(s) 19, 50, 73, 88, 119
Hin1I GRCGYC 1 cut(s) 142
HinfI GANTC 1 cut(s) 93
HpaII CCGG 5 cut(s) 19, 50, 73, 88, 119
Hpy188I TCNGA 1 cut(s) 98
Hpy99I CGWCG 2 cut(s) 102, 147
HpyCH4IV ACGT 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpySE526I ACGT 1 cut(s) 142
Hsp92I GRCGYC 1 cut(s) 142
KroI GCCGGC 1 cut(s) 72
KroNI GCCGGC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 5 cut(s) 32, 63, 86, 101, 132
MaeII ACGT 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 2 cut(s) 112, 157
MlyI GAGTC 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 3 cut(s) 33, 102, 144
MroNI GCCGGC 1 cut(s) 72
MseI TTAA 1 cut(s) 80
MspI CCGG 5 cut(s) 19, 50, 73, 88, 119
MwoI GCNNNNNNNGC 1 cut(s) 28
NaeI GCCGGC 1 cut(s) 74
NgoMIV GCCGGC 1 cut(s) 72
PdiI GCCGGC 1 cut(s) 74
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 80
SchI GAGTC 1 cut(s) 102
SduI GDGCHC 1 cut(s) 28
SetI ASST 2 cut(s) 18, 145
Sse9I AATT 2 cut(s) 112, 157
SsiI CCGC 1 cut(s) 29
TaiI ACGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 38, 107
TasI AATT 2 cut(s) 112, 157
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TspGWI ACGGA 1 cut(s) 22
XapI RAATTY 1 cut(s) 112
ZraI GACGTC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.