pycom14g19290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0002872
Physical Location & Seq
Reverse (-)
20678174 .. 20679753
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g19290.4

Sequence Viewer

Length: 264 bp
ATGCAAGTTCCGGCGGACACCCGTGGCTTCCAGGCTGTTTTTCGGCCAACTCCGACCACGATGACGGGAACCAAGGGGGCGTTTAATTGTGGCGTTTCCGTCTTCGCTAGTTGCGTGGCTCTTCGGCGGCGAAGTACTGACTTAGAATCGAGGCATACAATCCCGACGTCCAGGCCCTTCCGCATCGGCATCTTCGAGTCCTCTCGGTGTAGGACCCACTCCTTGGTTTCATTCAATTTTATATTATTTTCTTTAGTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.72

Weight (kDa)

11.41

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 223
AciI CCGC 3 cut(s) 14, 127, 181
AcoI YGGCCR 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 2 cut(s) 30, 170
AoxI GGCC 2 cut(s) 44, 173
AspS9I GGNCC 2 cut(s) 174, 213
AvaII GGWCC 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 94
BciT130I CCWGG 2 cut(s) 32, 172
BfaI CTAG 2 cut(s) 108, 262
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
BmcAI AGTACT 1 cut(s) 136
Bme1390I CCNGG 2 cut(s) 32, 172
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 174, 213
BmiI GGNNCC 2 cut(s) 70, 215
BmrFI CCNGG 2 cut(s) 32, 172
BmsI GCATC 2 cut(s) 192, 198
BpiI GAAGAC 1 cut(s) 94
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 22, 72, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 223
BseBI CCWGG 2 cut(s) 32, 172
BseDI CCNNGG 3 cut(s) 22, 72, 222
BseLI CCNNNNNNNGG 1 cut(s) 223
BshFI GGCC 2 cut(s) 46, 175
BsiSI CCGG 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 223
BsnI GGCC 2 cut(s) 46, 175
BspACI CCGC 3 cut(s) 14, 127, 181
BspANI GGCC 2 cut(s) 46, 175
BspLI GGNNCC 2 cut(s) 70, 215
BspQI GCTCTTC 1 cut(s) 126
BssECI CCNNGG 3 cut(s) 22, 72, 222
BssNI GRCGYC 1 cut(s) 167
BssT1I CCWWGG 2 cut(s) 72, 222
Bst2UI CCWGG 2 cut(s) 32, 172
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 22
BstNI CCWGG 2 cut(s) 32, 172
BstSCI CCNGG 2 cut(s) 30, 170
BstV2I GAAGAC 1 cut(s) 94
BsuRI GGCC 2 cut(s) 46, 175
BtgI CCRYGG 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 174, 213
Csp6I GTAC 1 cut(s) 135
CviJI RGCY 5 cut(s) 27, 35, 46, 119, 175
CviKI_1 RGCY 5 cut(s) 27, 35, 46, 119, 175
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 2 cut(s) 72, 222
Eco47I GGWCC 1 cut(s) 213
EcoO109I RGGNCCY 2 cut(s) 174, 213
EcoRII CCWGG 2 cut(s) 30, 170
EcoT14I CCWWGG 2 cut(s) 72, 222
ErhI CCWWGG 2 cut(s) 72, 222
FaiI YATR 2 cut(s) 156, 242
Fnu4HI GCNGC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 2 cut(s) 108, 262
GluI GCNGC 1 cut(s) 128
HaeIII GGCC 2 cut(s) 46, 175
HapII CCGG 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 167
HinfI GANTC 2 cut(s) 146, 197
HpaII CCGG 1 cut(s) 11
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 167
LguI GCTCTTC 1 cut(s) 126
LpnPI CCDG 5 cut(s) 17, 24, 44, 157, 184
LweI GCATC 2 cut(s) 192, 198
MaeI CTAG 2 cut(s) 108, 262
MaeII ACGT 1 cut(s) 167
MboII GAAGA 3 cut(s) 94, 113, 184
MluCI AATT 2 cut(s) 85, 235
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 144, 211
MseI TTAA 1 cut(s) 84
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 32, 172
MvaI CCWGG 2 cut(s) 32, 172
NlaIV GGNNCC 2 cut(s) 70, 215
PciSI GCTCTTC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 192
PfeI GAWTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 213
Psp5II RGGWCCY 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 30, 170
PspGI CCWGG 2 cut(s) 30, 170
PspN4I GGNNCC 2 cut(s) 70, 215
PspPI GGNCC 2 cut(s) 174, 213
PspPPI RGGWCCY 1 cut(s) 213
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 128
Sau96I GGNCC 2 cut(s) 174, 213
ScaI AGTACT 1 cut(s) 136
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 32, 172
SetI ASST 1 cut(s) 170
SfaNI GCATC 2 cut(s) 192, 198
SinI GGWCC 1 cut(s) 213
Sse9I AATT 2 cut(s) 85, 235
SsiI CCGC 3 cut(s) 14, 127, 181
SspMI CTAG 2 cut(s) 108, 262
StyD4I CCNGG 2 cut(s) 30, 170
StyI CCWWGG 2 cut(s) 72, 222
TaiI ACGT 1 cut(s) 170
TaqI TCGA 2 cut(s) 149, 195
TasI AATT 2 cut(s) 85, 235
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 88
Van91I CCANNNNNTGG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 213
XspI CTAG 2 cut(s) 108, 262
ZraI GACGTC 1 cut(s) 168
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.