pycom11g04640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002872
Physical Location & Seq
Reverse (-)
3589266 .. 3590029
764 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g04640.2

Sequence Viewer

Length: 516 bp
ATGAAAAATAGGTATTTTTGTATTTTCACTAAGTTTGAGGGTACCTTTCTTTTTAAAATTGTTTTTAAACCTTATTTGGTGAGCCCAAGGGGCCCACCCCCTGTTTTGTCCCCCCTGCCGTGTCCCTCATTTCTTCTTTCTTCTCCTTTTTTTTTCTTCTTTTCCTTCTTTTCTGTTGTTGTTTGCTCCTTTTTCCTTTCTTTTCGAAAACTCTCTCATTCCTCTCTTCTTCTTCCCCGTGACAACACACACACACACACACACACACCCACAACTACACCTACTCGAGGAAATCATCACCATCATCGCCATTCAACTGCATCTCTCTTTCTCTCTCTTTCCCCTGCTCGCGGCGCCGGGAGGACACGAACACCTCTGGCGAGTTTTGGTTGTTTTCCGGTTGGGTTTTGGAGTGTTTTTGGCACGGGTGAGTGCACACCCAATTTTCCGGCGAGCACCGCCCCTTTCGAGGCAATTTCCGGCCAAACCAGGGCGAGTTGGCCGACGTGCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.11

Weight (kDa)

9.99

Isoelectric Point (pI)

32.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 41
AccB1I GGYRCC 2 cut(s) 41, 353
AccII CGCG 1 cut(s) 351
AciI CCGC 2 cut(s) 351, 459
AcoI YGGCCR 2 cut(s) 481, 500
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 4 cut(s) 287, 350, 469, 490
AgsI TTSAA 1 cut(s) 315
AjiI CACGTC 1 cut(s) 507
AjnI CCWGG 1 cut(s) 488
Alw21I GWGCWC 2 cut(s) 437, 458
Alw44I GTGCAC 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 3 cut(s) 91, 481, 500
ApaI GGGCCC 1 cut(s) 95
ApaLI GTGCAC 1 cut(s) 433
Asp718I GGTACC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 91, 92
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 3 cut(s) 91, 290, 440
AsuII TTCGAA 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 285
BaeGI GKGCMC 2 cut(s) 95, 437
BanI GGYRCC 2 cut(s) 41, 353
BanII GRGCYC 2 cut(s) 86, 95
Bbv12I GWGCWC 2 cut(s) 437, 458
BccI CCATC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 490
BcnI CCSGG 1 cut(s) 358
BfoI RGCGCY 1 cut(s) 357
BglI GCCNNNNNGGC 1 cut(s) 90
BisI GCNGC 1 cut(s) 352
BlsI GCNGC 1 cut(s) 353
Bme1390I CCNGG 2 cut(s) 358, 490
BmeT110I CYCGRG 1 cut(s) 285
BmgBI CACGTC 1 cut(s) 507
BmgT120I GGNCC 2 cut(s) 91, 92
BmiI GGNNCC 4 cut(s) 43, 92, 93, 355
BmrFI CCNGG 2 cut(s) 358, 490
BmsI GCATC 1 cut(s) 329
Bpu14I TTCGAA 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 2 cut(s) 86, 489
BsaWI WCCGGW 1 cut(s) 397
Bsc4I CCNNNNNNNGG 4 cut(s) 287, 350, 469, 490
BseBI CCWGG 1 cut(s) 490
BseDI CCNNGG 2 cut(s) 86, 489
BseLI CCNNNNNNNGG 4 cut(s) 287, 350, 469, 490
BseSI GKGCMC 2 cut(s) 95, 437
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 3 cut(s) 93, 483, 502
BshNI GGYRCC 2 cut(s) 41, 353
BsiHKAI GWGCWC 2 cut(s) 437, 458
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 4 cut(s) 357, 398, 449, 480
BslFI GGGAC 2 cut(s) 94, 108
BslI CCNNNNNNNGG 4 cut(s) 287, 350, 469, 490
BsmFI GGGAC 2 cut(s) 94, 108
BsnI GGCC 3 cut(s) 93, 483, 502
BsoBI CYCGRG 1 cut(s) 285
Bsp119I TTCGAA 1 cut(s) 205
Bsp120I GGGCCC 1 cut(s) 91
Bsp1286I GDGCHC 4 cut(s) 86, 95, 437, 458
BspACI CCGC 2 cut(s) 351, 459
BspANI GGCC 3 cut(s) 93, 483, 502
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 4 cut(s) 43, 92, 93, 355
BspT104I TTCGAA 1 cut(s) 205
BspT107I GGYRCC 2 cut(s) 41, 353
BssECI CCNNGG 2 cut(s) 86, 489
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 490
Bst6I CTCTTC 1 cut(s) 231
BstACI GRCGYC 1 cut(s) 354
BstBI TTCGAA 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 349, 454
BstDEI CTNAG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 351
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstMWI GCNNNNNNNGC 3 cut(s) 90, 353, 458
BstNI CCWGG 1 cut(s) 490
BstSCI CCNGG 2 cut(s) 356, 488
BstSLI GKGCMC 2 cut(s) 95, 437
BstUI CGCG 1 cut(s) 351
BsuRI GGCC 3 cut(s) 93, 483, 502
BtgZI GCGATG 1 cut(s) 290
BtrI CACGTC 1 cut(s) 507
Cac8I GCNNGC 2 cut(s) 349, 454
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 91, 92
Csp6I GTAC 1 cut(s) 42
CviJI RGCY 4 cut(s) 84, 93, 483, 502
CviKI_1 RGCY 4 cut(s) 84, 93, 483, 502
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 1 cut(s) 30
DinI GGCGCC 1 cut(s) 355
DraI TTTAAA 2 cut(s) 55, 67
EaeI YGGCCR 2 cut(s) 481, 500
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 86
Eco24I GRGCYC 2 cut(s) 86, 95
Eco88I CYCGRG 1 cut(s) 285
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 86
EcoT38I GRGCYC 2 cut(s) 86, 95
EgeI GGCGCC 1 cut(s) 355
EheI GGCGCC 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 86
FaqI GGGAC 2 cut(s) 94, 108
Fnu4HI GCNGC 1 cut(s) 352
FriOI GRGCYC 2 cut(s) 86, 95
Fsp4HI GCNGC 1 cut(s) 352
GlaI GCGC 1 cut(s) 355
GluI GCNGC 1 cut(s) 352
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 3 cut(s) 93, 483, 502
HapII CCGG 4 cut(s) 357, 398, 449, 480
HhaI GCGC 1 cut(s) 356
Hin1I GRCGYC 1 cut(s) 354
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HpaII CCGG 4 cut(s) 357, 398, 449, 480
HphI GGTGA 3 cut(s) 91, 290, 440
Hpy166II GTNNAC 1 cut(s) 435
Hpy8I GTNNAC 1 cut(s) 435
Hpy99I CGWCG 1 cut(s) 508
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 2 cut(s) 320, 435
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 353, 458
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 506
Hsp92I GRCGYC 1 cut(s) 354
HspAI GCGC 1 cut(s) 354
KasI GGCGCC 1 cut(s) 353
KpnI GGTACC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 191
LweI GCATC 1 cut(s) 329
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 1 cut(s) 239
MboII GAAGA 6 cut(s) 125, 132, 148, 218, 221, 224
MhlI GDGCHC 4 cut(s) 86, 95, 437, 458
MluCI AATT 3 cut(s) 57, 442, 474
Mly113I GGCGCC 1 cut(s) 354
MnlI CCTC 7 cut(s) 31, 136, 232, 281, 354, 384, 463
MseI TTAA 2 cut(s) 54, 66
MspI CCGG 4 cut(s) 357, 398, 449, 480
MspR9I CCNGG 2 cut(s) 358, 490
MvaI CCWGG 1 cut(s) 490
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 90, 353, 458
NarI GGCGCC 1 cut(s) 354
NciI CCSGG 1 cut(s) 358
NlaIV GGNNCC 4 cut(s) 43, 92, 93, 355
NmuCI GTSAC 1 cut(s) 239
NspV TTCGAA 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 285
PkrI GCNGC 1 cut(s) 353
PluTI GGCGCC 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 488
PspGI CCWGG 1 cut(s) 488
PspN4I GGNNCC 4 cut(s) 43, 92, 93, 355
PspOMI GGGCCC 1 cut(s) 91
PspPI GGNCC 2 cut(s) 91, 92
PspXI VCTCGAGB 1 cut(s) 285
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 54, 66
SatI GCNGC 1 cut(s) 352
Sau96I GGNCC 2 cut(s) 91, 92
ScrFI CCNGG 2 cut(s) 358, 490
SduI GDGCHC 4 cut(s) 86, 95, 437, 458
SetI ASST 6 cut(s) 14, 47, 73, 283, 376, 509
SfaNI GCATC 1 cut(s) 329
SfoI GGCGCC 1 cut(s) 355
Sfr274I CTCGAG 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 3 cut(s) 57, 442, 474
SsiI CCGC 2 cut(s) 351, 459
SspDI GGCGCC 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 356, 488
StyI CCWWGG 1 cut(s) 86
TaiI ACGT 1 cut(s) 509
TaqI TCGA 3 cut(s) 205, 286, 468
TasI AATT 3 cut(s) 57, 442, 474
TauI GCSGC 1 cut(s) 354
Tru1I TTAA 2 cut(s) 54, 66
Tru9I TTAA 2 cut(s) 54, 66
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 17
VneI GTGCAC 1 cut(s) 433
XagI CCTNNNNNAGG 1 cut(s) 285
XhoI CTCGAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.