Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003646

Physical Location & Seq

Genomic Coordinates Forward (+)

12186662 .. 12190913

Gene Structure 4252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G154500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGCAAGAAGAAGAAAAGAGCCGAATCAGAAGCCGAAGCAGAGCAAGAGAACAAAGTCGACACTGTTAATGGCGATTCTCATAAGAAAGACAAGAAGAAGAAGCACAACGTCGACAAAGCCGCGCTGATACCTACTGTGAGCGTAGCCGTCCCCGGCTCCATCATCCACAACGCTCAATCCCTCGAACTCGCCACCAGATTGGCTGGTCAGATTGCTCGTGCCATGACGATTTTCCGAATCGACGAGGTGGTGATATTTGACAACAAGAGTGAGTCTGGTTCACCACCAGAAGCTAATTCGGATGAGGATGAAAGTGGTGCTGCTTTTCTTGTACGAATCTTGAGGTACCTTGAGACACCTCAATATTTGAGAAAAGCTCTGTTTCCAAAACATAACAGCTTAAGATTTGTGGGTATGTTGCCTCCACTTGATGCTCCGCACCATCTTCGCAAACATGAATGGGGTCCGTTTCGGGAAGGTGTCACACTAAAAGAAAGATCTCCTAACCCTGCGGGAACACTAGTTGATGTGGGTTTGAGTAAGAATGTCATCGTTGATCAAGTACTTGAACCTGGGACGAGAGTTACTGTGGCTATGGGAGCCAACCGGAATTTGGATGCTGATATATCACGCCAGGTTGTTTCATCTTCCAAGCCTAGGGAAGAAGCAGGAACGTATTGGGGGTACAAAGTGCGCTATGCTTCCAATATTACTTCAGTAAGGAATGAATGCCCATACAAGGGTGGCTATGATCACTCAATTGGTACCTCCGAGCATGGTCAGATTATTAATTCCTCTGATCTCACTATACCTACCTTCAGGCATCTATTGATTGCTTTTGGTGGACTTGCTGGGTTGGAAGAGAGCATTGAAGAAGATAATAACTTAAAGGCAAAAAATGTGCGAGAGGTATTTGATTTGTATTTGAACACATGTCCACATCAGGGGAGTCGAACAATTCGAACAGAGGAAGCCATTTTCATTTCACTTCAGTATTTCCAAGAACCAATCAACAGAGCATTGCTGAGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrn_RNA_3

Protein Analysis

346

Amino Acids

38.38

Weight (kDa)

7.8

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19300
fragaria_vesca	FvH4_4g14960 FvH4_4g14960 FvH4_4g14960
malus_domestica	MD13G1186800.v1.1 MD16G1187700.v1.1
prunus_persica	Prupe.1G154500_v2.0.a1
pyrus_communis	pycom13g16170 pycom16g15750
rosa_chinensis	RchiOBHm_Chr4g0417131
rosa_laevigata	RLG00000007929 RLG00000032566 RLG00000032567
rosa_multiflora	Rmu_ssc0000340.1_g000001 Rmu_ssc0000340.1_g000007
rosa_roxburghii	Rroxscaffold_4G00306590 Rroxscaffold_5G00348510 Rroxscaffold_5G00360910 Rroxscaffold_6G00390930 Rroxscaffold_6G00415160 Rroxscaffold_6G00415170
rosa_rugosa	Rorug02G0113500 Rorug02G0178600 Rorug04G0146100
rosa_samantha	Rh1DG080400 Rh3DG141400 Rh4AG208600 Rh4BG088300 Rh4CG219600 Rh4DG206500 Rh6CG163700 Rh6DG155500 Rh7DG306400
rosa_wichuraiana	Rw4G017680 Rw7G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	348, 767
AccB1I	GGYRCC	2 cut(s)	348, 767
AccI	GTMKAC	2 cut(s)	60, 114
AccII	CGCG	1 cut(s)	125
AciI	CCGC	3 cut(s)	123, 440, 515
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	3 cut(s)	702, 805, 977
AfaI	GTAC	5 cut(s)	336, 350, 567, 689, 769
AfiI	CCNNNNNNNGG	5 cut(s)	616, 660, 742, 743, 947
AflII	CTTAAG	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	935
AgsI	TTSAA	3 cut(s)	572, 875, 931
AhlI	ACTAGT	1 cut(s)	523
AjnI	CCWGG	2 cut(s)	574, 636
AluBI	AGCT	3 cut(s)	296, 380, 402
AluI	AGCT	3 cut(s)	296, 380, 402
Alw26I	GTCTC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	613
AseI	ATTAAT	1 cut(s)	792
Asp718I	GGTACC	2 cut(s)	348, 767
AspA2I	CCTAGG	1 cut(s)	659
AspLEI	GCGC	2 cut(s)	127, 699
AspS9I	GGNCC	1 cut(s)	467
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	265, 276
AsuII	TTCGAA	1 cut(s)	964
AvaII	GGWCC	1 cut(s)	467
AvrII	CCTAGG	1 cut(s)	659
BanI	GGYRCC	2 cut(s)	348, 767
BauI	CACGAG	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	2 cut(s)	170, 453
BceAI	ACGGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	2 cut(s)	576, 638
BclI	TGATCA	2 cut(s)	559, 754
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	350
BcuI	ACTAGT	1 cut(s)	523
BfaI	CTAG	2 cut(s)	524, 660
BfrI	CTTAAG	1 cut(s)	403
BglII	AGATCT	1 cut(s)	500
BisI	GCNGC	2 cut(s)	123, 324
BlnI	CCTAGG	1 cut(s)	659
BlsI	GCNGC	2 cut(s)	124, 325
BmcAI	AGTACT	1 cut(s)	567
Bme1390I	CCNGG	3 cut(s)	156, 576, 638
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	5 cut(s)	160, 350, 468, 604, 769
BmrFI	CCNGG	3 cut(s)	156, 576, 638
BmsI	GCATC	3 cut(s)	424, 610, 835
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
Bpu14I	TTCGAA	1 cut(s)	964
BpuEI	CTTGAG	2 cut(s)	364, 374
BpuMI	CCSGG	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	154, 575, 659
BsaWI	WCCGGW	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	5 cut(s)	616, 660, 742, 743, 947
Bse3DI	GCAATG	1 cut(s)	1022
BseBI	CCWGG	2 cut(s)	576, 638
BseDI	CCNNGG	3 cut(s)	154, 575, 659
BseGI	GGATG	4 cut(s)	165, 310, 316, 625
BseLI	CCNNNNNNNGG	5 cut(s)	616, 660, 742, 743, 947
BseMI	GCAATG	1 cut(s)	1022
BseMII	CTCAG	1 cut(s)	1019
BseXI	GCAGC	1 cut(s)	310
BseYI	CCCAGC	1 cut(s)	854
Bsh1236I	CGCG	1 cut(s)	125
BshNI	GGYRCC	2 cut(s)	348, 767
BsiSI	CCGG	2 cut(s)	156, 610
BslFI	GGGAC	2 cut(s)	137, 592
BslI	CCNNNNNNNGG	5 cut(s)	616, 660, 742, 743, 947
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	2 cut(s)	137, 592
BsmI	GAATGC	1 cut(s)	737
Bsp119I	TTCGAA	1 cut(s)	964
Bsp143I	GATC	4 cut(s)	500, 559, 754, 802
BspACI	CCGC	3 cut(s)	123, 440, 515
BspCNI	CTCAG	1 cut(s)	1020
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	5 cut(s)	160, 350, 468, 604, 769
BspT104I	TTCGAA	1 cut(s)	964
BspT107I	GGYRCC	2 cut(s)	348, 767
BspTI	CTTAAG	1 cut(s)	403
BsrDI	GCAATG	1 cut(s)	1022
BssECI	CCNNGG	3 cut(s)	154, 575, 659
BssMI	GATC	4 cut(s)	500, 559, 754, 802
BssSI	CACGAG	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	659
Bst2BI	CACGAG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	576, 638
Bst4CI	ACNGT	3 cut(s)	67, 139, 592
Bst6I	CTCTTC	1 cut(s)	858
BstAFI	CTTAAG	1 cut(s)	403
BstBI	TTCGAA	1 cut(s)	964
BstDEI	CTNAG	1 cut(s)	1028
BstF5I	GGATG	4 cut(s)	165, 310, 316, 625
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	2 cut(s)	127, 699
BstKTI	GATC	4 cut(s)	503, 562, 757, 805
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	4 cut(s)	500, 559, 754, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	2 cut(s)	576, 638
BstNSI	RCATGY	1 cut(s)	939
BstSCI	CCNGG	3 cut(s)	154, 574, 636
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	500
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	500
BtsCI	GGATG	4 cut(s)	165, 310, 316, 625
BtsIMutI	CAGTG	1 cut(s)	63
CfoI	GCGC	2 cut(s)	127, 699
Cfr13I	GGNCC	1 cut(s)	467
Csp6I	GTAC	5 cut(s)	335, 349, 566, 688, 768
CviAII	CATG	4 cut(s)	226, 458, 779, 936
CviQI	GTAC	5 cut(s)	335, 349, 566, 688, 768
DdeI	CTNAG	1 cut(s)	1028
DpnI	GATC	4 cut(s)	502, 561, 756, 804
DpnII	GATC	4 cut(s)	500, 559, 754, 802
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco130I	CCWWGG	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	467
Eco57I	CTGAAG	3 cut(s)	702, 805, 977
EcoRII	CCWGG	2 cut(s)	574, 636
EcoT14I	CCWWGG	1 cut(s)	659
ErhI	CCWWGG	1 cut(s)	659
FaeI	CATG	4 cut(s)	229, 461, 782, 939
FaqI	GGGAC	2 cut(s)	137, 592
FatI	CATG	4 cut(s)	225, 457, 778, 935
FauI	CCCGC	1 cut(s)	508
FbaI	TGATCA	2 cut(s)	559, 754
FblI	GTMKAC	2 cut(s)	60, 114
Fnu4HI	GCNGC	2 cut(s)	123, 324
FokI	GGATG	4 cut(s)	152, 317, 323, 632
Fsp4HI	GCNGC	2 cut(s)	123, 324
FspBI	CTAG	2 cut(s)	524, 660
GlaI	GCGC	2 cut(s)	126, 698
GluI	GCNGC	2 cut(s)	123, 324
GsaI	CCCAGC	1 cut(s)	858
HapII	CCGG	2 cut(s)	156, 610
HhaI	GCGC	2 cut(s)	127, 699
Hin1II	CATG	4 cut(s)	229, 461, 782, 939
Hin6I	GCGC	2 cut(s)	125, 697
HinP1I	GCGC	2 cut(s)	125, 697
HincII	GTYRAC	2 cut(s)	61, 115
HindII	GTYRAC	2 cut(s)	61, 115
HinfI	GANTC	6 cut(s)	26, 77, 240, 275, 339, 952
HpaII	CCGG	2 cut(s)	156, 610
HphI	GGTGA	2 cut(s)	265, 276
Hpy166II	GTNNAC	5 cut(s)	61, 115, 284, 848, 941
Hpy188I	TCNGA	7 cut(s)	31, 213, 239, 304, 775, 786, 802
Hpy188III	TCNNGA	2 cut(s)	343, 476
Hpy8I	GTNNAC	5 cut(s)	61, 115, 284, 848, 941
Hpy99I	CGWCG	2 cut(s)	116, 248
HpyAV	CCTTC	2 cut(s)	473, 829
HpyCH4III	ACNGT	3 cut(s)	67, 139, 592
HpyCH4IV	ACGT	2 cut(s)	111, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	1 cut(s)	1028
HpySE526I	ACGT	2 cut(s)	111, 677
Hsp92II	CATG	4 cut(s)	229, 461, 782, 939
HspAI	GCGC	2 cut(s)	125, 697
KpnI	GGTACC	2 cut(s)	352, 771
Ksp22I	TGATCA	2 cut(s)	559, 754
Kzo9I	GATC	4 cut(s)	500, 559, 754, 802
LmnI	GCTCC	3 cut(s)	164, 442, 602
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	3 cut(s)	424, 610, 835
MaeI	CTAG	2 cut(s)	524, 660
MaeII	ACGT	2 cut(s)	111, 677
MaeIII	GTNAC	2 cut(s)	484, 586
MalI	GATC	4 cut(s)	502, 561, 756, 804
MboI	GATC	4 cut(s)	500, 559, 754, 802
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	1 cut(s)	500
MluCI	AATT	5 cut(s)	298, 613, 762, 793, 960
MlyI	GAGTC	2 cut(s)	284, 961
MmeI	TCCRAC	1 cut(s)	840
MseI	TTAA	4 cut(s)	69, 404, 792, 890
MspCI	CTTAAG	1 cut(s)	403
MspI	CCGG	2 cut(s)	156, 610
MspR9I	CCNGG	3 cut(s)	156, 576, 638
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	1 cut(s)	737
MvaI	CCWGG	2 cut(s)	576, 638
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	602
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	4 cut(s)	500, 559, 754, 802
NlaIII	CATG	4 cut(s)	229, 461, 782, 939
NlaIV	GGNNCC	5 cut(s)	160, 350, 468, 604, 769
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	939
NspV	TTCGAA	1 cut(s)	964
PciI	ACATGT	1 cut(s)	935
PcsI	WCGNNNNNNNCGW	1 cut(s)	961
PctI	GAATGC	1 cut(s)	737
PfeI	GAWTC	4 cut(s)	26, 77, 240, 339
PkrI	GCNGC	2 cut(s)	124, 325
PleI	GAGTC	2 cut(s)	283, 960
PpsI	GAGTC	2 cut(s)	283, 960
PscI	ACATGT	1 cut(s)	935
PshBI	ATTAAT	1 cut(s)	792
Psp6I	CCWGG	2 cut(s)	574, 636
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	2 cut(s)	574, 636
PspN4I	GGNNCC	5 cut(s)	160, 350, 468, 604, 769
PspPI	GGNCC	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	500
RsaI	GTAC	5 cut(s)	336, 350, 567, 689, 769
RsaNI	GTAC	5 cut(s)	335, 349, 566, 688, 768
SalI	GTCGAC	2 cut(s)	59, 113
SaqAI	TTAA	4 cut(s)	69, 404, 792, 890
SatI	GCNGC	2 cut(s)	123, 324
Sau3AI	GATC	4 cut(s)	500, 559, 754, 802
Sau96I	GGNCC	1 cut(s)	467
ScaI	AGTACT	1 cut(s)	567
SchI	GAGTC	2 cut(s)	284, 961
ScrFI	CCNGG	3 cut(s)	156, 576, 638
SfaNI	GCATC	3 cut(s)	424, 610, 835
SfuI	TTCGAA	1 cut(s)	964
SinI	GGWCC	1 cut(s)	467
SmlI	CTYRAG	3 cut(s)	343, 353, 403
SmoI	CTYRAG	3 cut(s)	343, 353, 403
SpeI	ACTAGT	1 cut(s)	523
Sse9I	AATT	5 cut(s)	298, 613, 762, 793, 960
SsiI	CCGC	3 cut(s)	123, 440, 515
SspI	AATATT	2 cut(s)	368, 712
SspMI	CTAG	2 cut(s)	524, 660
StyD4I	CCNGG	3 cut(s)	154, 574, 636
StyI	CCWWGG	1 cut(s)	659
TaaI	ACNGT	3 cut(s)	67, 139, 592
TaiI	ACGT	2 cut(s)	114, 680
TaqI	TCGA	6 cut(s)	60, 114, 186, 243, 955, 964
TasI	AATT	5 cut(s)	298, 613, 762, 793, 960
TatI	WGTACW	1 cut(s)	565
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	4 cut(s)	26, 77, 240, 339
Tru1I	TTAA	4 cut(s)	69, 404, 792, 890
Tru9I	TTAA	4 cut(s)	69, 404, 792, 890
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	5 cut(s)	327, 474, 636, 744, 973
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	70
Vha464I	CTTAAG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	467
VspI	ATTAAT	1 cut(s)	792
XapI	RAATTY	1 cut(s)	613
XceI	RCATGY	1 cut(s)	939
XcmI	CCANNNNNNNNNTGG	1 cut(s)	613
XmaJI	CCTAGG	1 cut(s)	659
XmiI	GTMKAC	2 cut(s)	60, 114
XspI	CTAG	2 cut(s)	524, 660
ZrmI	AGTACT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.