Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003646

Physical Location & Seq

Genomic Coordinates Reverse (-)

37394719 .. 37405824

Gene Structure 11106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCTTCGGTCCCCCGGCACGGAGCTTCGAAGTTATCTTGACGCGGCACGTGGCGTCGCGTCGGCGGTGATGCGGGGGCATCGAGAAGAGAAGACCGCCCAATACGATCTCCTCTCGACGCCCTTTGTATTTTACTTGACAAATAGCGAAGAAAGATCTCCAGATGGTGTTGGGACGTTAGTTGATGTGGGCTTGAGTAAGGTATTCTCGTTGTTTGGTTTTGCTAGTCTTTCACGAGTTATTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

82

Amino Acids

8.94

Weight (kDa)

6.55

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19300
fragaria_vesca	FvH4_4g14960 FvH4_4g14960 FvH4_4g14960
malus_domestica	MD13G1186800.v1.1 MD16G1187700.v1.1
prunus_persica	Prupe.1G154500_v2.0.a1
pyrus_communis	pycom13g16170 pycom16g15750
rosa_chinensis	RchiOBHm_Chr4g0417131
rosa_laevigata	RLG00000007929 RLG00000032566 RLG00000032567
rosa_multiflora	Rmu_ssc0000340.1_g000001 Rmu_ssc0000340.1_g000007
rosa_roxburghii	Rroxscaffold_4G00306590 Rroxscaffold_5G00348510 Rroxscaffold_5G00360910 Rroxscaffold_6G00390930 Rroxscaffold_6G00415160 Rroxscaffold_6G00415170
rosa_rugosa	Rorug02G0113500 Rorug02G0178600 Rorug04G0146100
rosa_samantha	Rh1DG080400 Rh3DG141400 Rh4AG208600 Rh4BG088300 Rh4CG219600 Rh4DG206500 Rh6CG163700 Rh6DG155500 Rh7DG306400
rosa_wichuraiana	Rw4G017680 Rw7G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	44, 59
AciI	CCGC	4 cut(s)	44, 65, 73, 96
AcvI	CACGTG	1 cut(s)	50
AcyI	GRCGYC	2 cut(s)	54, 119
AfiI	CCNNNNNNNGG	1 cut(s)	19
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	79
AsuII	TTCGAA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	9
BauI	CACGAG	1 cut(s)	234
BbrPI	CACGTG	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	98
BccI	CCATC	1 cut(s)	158
BcnI	CCSGG	1 cut(s)	15
BfaI	CTAG	1 cut(s)	225
BglII	AGATCT	1 cut(s)	155
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	2 cut(s)	60, 88
BpiI	GAAGAC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	214
BpuMI	CCSGG	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	50
BsaHI	GRCGYC	2 cut(s)	54, 119
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	101
Bsh1236I	CGCG	2 cut(s)	44, 59
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	187
Bsp119I	TTCGAA	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	106, 155
BspACI	CCGC	4 cut(s)	44, 65, 73, 96
BspFNI	CGCG	2 cut(s)	44, 59
BspLI	GGNNCC	1 cut(s)	11
BspT104I	TTCGAA	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	2 cut(s)	106, 155
BssNI	GRCGYC	2 cut(s)	54, 119
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	81
BstACI	GRCGYC	2 cut(s)	54, 119
BstBAI	YACGTR	1 cut(s)	50
BstBI	TTCGAA	1 cut(s)	28
BstFNI	CGCG	2 cut(s)	44, 59
BstKTI	GATC	2 cut(s)	109, 158
BstMBI	GATC	2 cut(s)	106, 155
BstSCI	CCNGG	1 cut(s)	13
BstUI	CGCG	2 cut(s)	44, 59
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	9
CseI	GACGC	4 cut(s)	43, 48, 50, 127
CviJI	RGCY	2 cut(s)	25, 192
CviKI_1	RGCY	2 cut(s)	25, 192
DpnI	GATC	2 cut(s)	108, 157
DpnII	GATC	2 cut(s)	106, 155
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	9
Eco72I	CACGTG	1 cut(s)	50
FaqI	GGGAC	1 cut(s)	187
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	144
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	4 cut(s)	43, 48, 50, 127
Hin1I	GRCGYC	2 cut(s)	54, 119
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	79
Hpy188III	TCNNGA	5 cut(s)	38, 83, 115, 161, 234
Hpy99I	CGWCG	3 cut(s)	59, 64, 121
HpyCH4IV	ACGT	2 cut(s)	49, 176
HpySE526I	ACGT	2 cut(s)	49, 176
Hsp92I	GRCGYC	2 cut(s)	54, 119
Kzo9I	GATC	2 cut(s)	106, 155
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	2 cut(s)	28, 174
LweI	GCATC	2 cut(s)	60, 88
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	2 cut(s)	49, 176
MalI	GATC	2 cut(s)	108, 157
MboI	GATC	2 cut(s)	106, 155
MboII	GAAGA	3 cut(s)	98, 103, 161
MflI	RGATCY	1 cut(s)	155
MnlI	CCTC	1 cut(s)	122
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	15
MvnI	CGCG	2 cut(s)	44, 59
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	106, 155
NlaIV	GGNNCC	1 cut(s)	11
NspV	TTCGAA	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	46
PmaCI	CACGTG	1 cut(s)	50
PmlI	CACGTG	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	50
PspCI	CACGTG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	155
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	106, 155
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	4 cut(s)	27, 52, 179, 204
SfaNI	GCATC	2 cut(s)	60, 88
SfuI	TTCGAA	1 cut(s)	28
SinI	GGWCC	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
SsiI	CCGC	4 cut(s)	44, 65, 73, 96
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	13
TaiI	ACGT	2 cut(s)	52, 179
TaqI	TCGA	3 cut(s)	28, 82, 116
TauI	GCSGC	1 cut(s)	47
TspGWI	ACGGA	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	9
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.