Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000340.1

Orthogroup ID

OG0003646

Physical Location & Seq

Genomic Coordinates Forward (+)

10808 .. 12812

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000340.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgggtaaaaagaagaagagaaccgaagcggaagaagaaatcaaagccgacgacattgttaacggcgacttgcataacaaaaccaacaagaagaagaagaagaagaaacccaaaaccgacacagccgccgtgattcccaccgtcaccgtagccatcgccggttccatcattcacaacgctcaatccctcgaactcgccactcggaagaagagaaccgaagcggaagaagaaatcaaagccgacgacattgttaacggcgacttgcataacaaaaccaacaacaagaagaagaagaataaacccaaaacagacacagccgccgtgattcccaccgtcaccgtagccatcgccggttccatcgttcacaacgctcaatccctcgaactcgccactcggctggccggtcagatagctcgtgccgtcacgattttccgagttgatgaggtggtggtatttgacaacaacggtgagtctggctcgccggaagctaataattccgatgagaatgaaagcggggctgcttttcttataagaatcttgcggtatcttgagacgccgcagtatctgaggaaagctctatttccgaaacataatagcttgagatttgtgggcttgttgcctcctcttgatgcgccgcaccatctgcgtagacacgaatggggtgcatttcgggaaggtgtcacgctaaaggaaagatctccggatggtgttgggacattagttgatgtgggcttgagtaagaatgttgtcgttgaccacgtacttgatcctggaacaagagttactgtggctatgggagacagctggaatttggatgctgatatatcacggcaggttgtatcatcatccaagccaagggaagaagcagggatgtattgggggtacaaagtgcggtatgcttccaatatcacttcggtaatgactgaatgtccgtacgagggtggttatgatcatttgattggaacctcagagcatggtcagattataaattcctctgatctcaatatacctactttcaggtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrn_RNA_3

Protein Analysis

341

Amino Acids

37.59

Weight (kDa)

8.86

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19300
fragaria_vesca	FvH4_4g14960 FvH4_4g14960 FvH4_4g14960
malus_domestica	MD13G1186800.v1.1 MD16G1187700.v1.1
prunus_persica	Prupe.1G154500_v2.0.a1
pyrus_communis	pycom13g16170 pycom16g15750
rosa_chinensis	RchiOBHm_Chr4g0417131
rosa_laevigata	RLG00000007929 RLG00000032566 RLG00000032567
rosa_multiflora	Rmu_ssc0000340.1_g000001 Rmu_ssc0000340.1_g000007
rosa_roxburghii	Rroxscaffold_4G00306590 Rroxscaffold_5G00348510 Rroxscaffold_5G00360910 Rroxscaffold_6G00390930 Rroxscaffold_6G00415160 Rroxscaffold_6G00415170
rosa_rugosa	Rorug02G0113500 Rorug02G0178600 Rorug04G0146100
rosa_samantha	Rh1DG080400 Rh3DG141400 Rh4AG208600 Rh4BG088300 Rh4CG219600 Rh4DG206500 Rh6CG163700 Rh6DG155500 Rh7DG306400
rosa_wichuraiana	Rw4G017680 Rw7G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	530, 986
Acc36I	ACCTGC	1 cut(s)	823
AccI	GTMKAC	1 cut(s)	649
AccIII	TCCGGA	1 cut(s)	700
AciI	CCGC	9 cut(s)	29, 126, 221, 318, 513, 541, 557, 635, 892
AclWI	GGATC	1 cut(s)	761
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	2 cut(s)	808, 988
AcyI	GRCGYC	1 cut(s)	554
AfaI	GTAC	4 cut(s)	762, 884, 935, 1022
AfiI	CCNNNNNNNGG	2 cut(s)	855, 938
AhdI	GACNNNNNGTC	1 cut(s)	927
AjnI	CCWGG	1 cut(s)	769
AluBI	AGCT	5 cut(s)	413, 488, 575, 597, 804
AluI	AGCT	5 cut(s)	413, 488, 575, 597, 804
Alw26I	GTCTC	2 cut(s)	545, 792
AlwI	GGATC	1 cut(s)	761
AlwNI	CAGNNNCTG	1 cut(s)	565
Aor13HI	TCCGGA	1 cut(s)	700
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	2 cut(s)	808, 988
AspLEI	GCGC	1 cut(s)	634
AsuHPI	GGTGA	3 cut(s)	136, 328, 479
BauI	CACGAG	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	6 cut(s)	161, 173, 353, 365, 648, 698
BceAI	ACGGC	6 cut(s)	79, 113, 271, 305, 404, 845
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	1 cut(s)	771
BclI	TGATCA	1 cut(s)	949
BcoDI	GTCTC	2 cut(s)	545, 792
BfuAI	ACCTGC	1 cut(s)	823
BglII	AGATCT	1 cut(s)	695
BisI	GCNGC	5 cut(s)	126, 318, 519, 557, 635
BlsI	GCNGC	5 cut(s)	127, 319, 520, 558, 636
Bme1390I	CCNGG	1 cut(s)	771
BmeRI	GACNNNNNGTC	1 cut(s)	927
BmiI	GGNNCC	3 cut(s)	163, 355, 964
BmrFI	CCNGG	1 cut(s)	771
BmsI	GCATC	2 cut(s)	619, 805
BplI	GAGNNNNNCTC	4 cut(s)	461, 493, 559, 591
BpuEI	CTTGAG	3 cut(s)	569, 619, 754
BsaAI	YACGTR	1 cut(s)	760
BsaHI	GRCGYC	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	854
BsaWI	WCCGGW	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	2 cut(s)	855, 938
Bse118I	RCCGGY	3 cut(s)	158, 350, 401
BseAI	TCCGGA	1 cut(s)	700
BseBI	CCWGG	1 cut(s)	771
BseDI	CCNNGG	1 cut(s)	854
BseGI	GGATG	4 cut(s)	709, 820, 845, 876
BseLI	CCNNNNNNNGG	2 cut(s)	855, 938
BseMII	CTCAG	2 cut(s)	557, 981
BseRI	GAGGAG	1 cut(s)	612
BseXI	GCAGC	1 cut(s)	505
BshFI	GGCC	1 cut(s)	401
BsiSI	CCGG	5 cut(s)	159, 351, 402, 482, 701
BsiWI	CGTACG	1 cut(s)	933
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	2 cut(s)	855, 938
BsmAI	GTCTC	2 cut(s)	545, 792
BsmBI	CGTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	727
BsnI	GGCC	1 cut(s)	401
Bsp13I	TCCGGA	1 cut(s)	700
Bsp143I	GATC	4 cut(s)	695, 766, 949, 997
BspACI	CCGC	9 cut(s)	29, 126, 221, 318, 513, 541, 557, 635, 892
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	2 cut(s)	558, 980
BspEI	TCCGGA	1 cut(s)	700
BspLI	GGNNCC	3 cut(s)	163, 355, 964
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	1 cut(s)	761
BsrFI	RCCGGY	3 cut(s)	158, 350, 401
BssAI	RCCGGY	3 cut(s)	158, 350, 401
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	4 cut(s)	695, 766, 949, 997
BssNI	GRCGYC	1 cut(s)	554
BssSI	CACGAG	1 cut(s)	414
BssT1I	CCWWGG	1 cut(s)	854
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	771
Bst4CI	ACNGT	6 cut(s)	142, 148, 334, 340, 467, 787
Bst6I	CTCTTC	2 cut(s)	11, 203
BstACI	GRCGYC	1 cut(s)	554
BstAPI	GCANNNNNTGC	1 cut(s)	643
BstBAI	YACGTR	1 cut(s)	760
BstC8I	GCNNGC	2 cut(s)	399, 479
BstDEI	CTNAG	2 cut(s)	566, 967
BstF5I	GGATG	4 cut(s)	709, 820, 845, 876
BstHHI	GCGC	1 cut(s)	634
BstKTI	GATC	4 cut(s)	698, 769, 952, 1000
BstMAI	GTCTC	2 cut(s)	545, 792
BstMBI	GATC	4 cut(s)	695, 766, 949, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	643
BstNI	CCWGG	1 cut(s)	771
BstSCI	CCNGG	1 cut(s)	769
BstV1I	GCAGC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	695
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	401
BtgZI	GCGATG	2 cut(s)	139, 331
BtsCI	GGATG	4 cut(s)	709, 820, 845, 876
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	2 cut(s)	399, 479
CaiI	CAGNNNCTG	1 cut(s)	565
CfoI	GCGC	1 cut(s)	634
Cfr10I	RCCGGY	3 cut(s)	158, 350, 401
CseI	GACGC	1 cut(s)	562
Csp6I	GTAC	4 cut(s)	761, 883, 934, 1021
CviAII	CATG	1 cut(s)	974
CviQI	GTAC	4 cut(s)	761, 883, 934, 1021
DdeI	CTNAG	2 cut(s)	566, 967
DpnI	GATC	4 cut(s)	697, 768, 951, 999
DpnII	GATC	4 cut(s)	695, 766, 949, 997
DriI	GACNNNNNGTC	1 cut(s)	927
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	2 cut(s)	11, 203
Eam1105I	GACNNNNNGTC	1 cut(s)	927
EarI	CTCTTC	2 cut(s)	11, 203
Eco130I	CCWWGG	1 cut(s)	854
EcoRII	CCWGG	1 cut(s)	769
EcoT14I	CCWWGG	1 cut(s)	854
ErhI	CCWWGG	1 cut(s)	854
Esp3I	CGTCTC	1 cut(s)	545
FaeI	CATG	1 cut(s)	977
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	1 cut(s)	973
FauI	CCCGC	1 cut(s)	506
FbaI	TGATCA	1 cut(s)	949
FblI	GTMKAC	1 cut(s)	649
Fnu4HI	GCNGC	5 cut(s)	126, 318, 519, 557, 635
FokI	GGATG	4 cut(s)	716, 827, 832, 883
Fsp4HI	GCNGC	5 cut(s)	126, 318, 519, 557, 635
GlaI	GCGC	1 cut(s)	633
GluI	GCNGC	5 cut(s)	126, 318, 519, 557, 635
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	5 cut(s)	159, 351, 402, 482, 701
HgaI	GACGC	1 cut(s)	562
HhaI	GCGC	1 cut(s)	634
Hin1I	GRCGYC	1 cut(s)	554
Hin1II	CATG	1 cut(s)	977
Hin6I	GCGC	1 cut(s)	632
HinP1I	GCGC	1 cut(s)	632
HincII	GTYRAC	3 cut(s)	61, 253, 754
HindII	GTYRAC	3 cut(s)	61, 253, 754
HinfI	GANTC	4 cut(s)	133, 325, 470, 534
HpaI	GTTAAC	2 cut(s)	61, 253
HpaII	CCGG	5 cut(s)	159, 351, 402, 482, 701
HphI	GGTGA	3 cut(s)	136, 328, 479
Hpy166II	GTNNAC	5 cut(s)	61, 253, 364, 650, 754
Hpy188I	TCNGA	9 cut(s)	204, 408, 434, 499, 567, 585, 970, 981, 997
Hpy188III	TCNNGA	5 cut(s)	424, 548, 626, 671, 701
Hpy8I	GTNNAC	5 cut(s)	61, 253, 364, 650, 754
Hpy99I	CGWCG	2 cut(s)	53, 245
HpyAV	CCTTC	1 cut(s)	668
HpyCH4III	ACNGT	6 cut(s)	142, 148, 334, 340, 467, 787
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	3 cut(s)	73, 265, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	643
HpyF3I	CTNAG	2 cut(s)	566, 967
HpySE526I	ACGT	1 cut(s)	759
Hsp92I	GRCGYC	1 cut(s)	554
Hsp92II	CATG	1 cut(s)	977
HspAI	GCGC	1 cut(s)	632
Kpn2I	TCCGGA	1 cut(s)	700
Ksp22I	TGATCA	1 cut(s)	949
KspAI	GTTAAC	2 cut(s)	61, 253
Kzo9I	GATC	4 cut(s)	695, 766, 949, 997
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	2 cut(s)	619, 805
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	5 cut(s)	142, 334, 421, 679, 781
MalI	GATC	4 cut(s)	697, 768, 951, 999
MboI	GATC	4 cut(s)	695, 766, 949, 997
MflI	RGATCY	1 cut(s)	695
MluCI	AATT	3 cut(s)	493, 808, 988
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	9 cut(s)	197, 389, 436, 561, 630, 633, 931, 976, 1003
MroI	TCCGGA	1 cut(s)	700
MseI	TTAA	2 cut(s)	60, 252
MspA1I	CMGCKG	1 cut(s)	804
MspI	CCGG	5 cut(s)	159, 351, 402, 482, 701
MspR9I	CCNGG	1 cut(s)	771
MvaI	CCWGG	1 cut(s)	771
MwoI	GCNNNNNNNGC	1 cut(s)	643
NdeII	GATC	4 cut(s)	695, 766, 949, 997
NlaIII	CATG	1 cut(s)	977
NlaIV	GGNNCC	3 cut(s)	163, 355, 964
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	4 cut(s)	142, 334, 421, 679
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PfeI	GAWTC	3 cut(s)	133, 325, 534
Pfl23II	CGTACG	1 cut(s)	933
PfoI	TCCNGGA	1 cut(s)	769
PkrI	GCNGC	5 cut(s)	127, 319, 520, 558, 636
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Ppu21I	YACGTR	1 cut(s)	760
PsiI	TTATAA	2 cut(s)	530, 986
Psp6I	CCWGG	1 cut(s)	769
PspGI	CCWGG	1 cut(s)	769
PspLI	CGTACG	1 cut(s)	933
PspN4I	GGNNCC	3 cut(s)	163, 355, 964
PsrI	GAACNNNNNNTAC	2 cut(s)	766, 798
PstNI	CAGNNNCTG	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	695
PvuII	CAGCTG	1 cut(s)	804
RsaI	GTAC	4 cut(s)	762, 884, 935, 1022
RsaNI	GTAC	4 cut(s)	761, 883, 934, 1021
SaqAI	TTAA	2 cut(s)	60, 252
SatI	GCNGC	5 cut(s)	126, 318, 519, 557, 635
Sau3AI	GATC	4 cut(s)	695, 766, 949, 997
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	771
SfaNI	GCATC	2 cut(s)	619, 805
SmlI	CTYRAG	3 cut(s)	548, 598, 733
SmoI	CTYRAG	3 cut(s)	548, 598, 733
Sse9I	AATT	3 cut(s)	493, 808, 988
SsiI	CCGC	9 cut(s)	29, 126, 221, 318, 513, 541, 557, 635, 892
StyD4I	CCNGG	1 cut(s)	769
StyI	CCWWGG	1 cut(s)	854
TaaI	ACNGT	6 cut(s)	142, 148, 334, 340, 467, 787
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	2 cut(s)	189, 381
TasI	AATT	3 cut(s)	493, 808, 988
TauI	GCSGC	4 cut(s)	128, 320, 559, 637
TfiI	GAWTC	3 cut(s)	133, 325, 534
Tru1I	TTAA	2 cut(s)	60, 252
Tru9I	TTAA	2 cut(s)	60, 252
TseFI	GTSAC	4 cut(s)	142, 334, 421, 679
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	4 cut(s)	142, 334, 421, 679
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	1 cut(s)	921
XapI	RAATTY	2 cut(s)	808, 988
XmiI	GTMKAC	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.