Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003646

Physical Location & Seq

Genomic Coordinates Reverse (-)

27553332 .. 27554627

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00306590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGAGGTCGCGGCGTTCGTGTTGAGCTGGTGGGACAACTTTAATGAGTTGACTCGGTGGCAAGACACCATCTTCTACACTCTCTGCACAGCCAACGCCCCTCGGCTCCTCCGTCGCCCTGGTGGAATTGAAACTCTAGCAATCGCAAAAGCCTTTGGGGAATTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

56

Amino Acids

6.51

Weight (kDa)

6.09

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19300
fragaria_vesca	FvH4_4g14960 FvH4_4g14960 FvH4_4g14960
malus_domestica	MD13G1186800.v1.1 MD16G1187700.v1.1
prunus_persica	Prupe.1G154500_v2.0.a1
pyrus_communis	pycom13g16170 pycom16g15750
rosa_chinensis	RchiOBHm_Chr4g0417131
rosa_laevigata	RLG00000007929 RLG00000032566 RLG00000032567
rosa_multiflora	Rmu_ssc0000340.1_g000001 Rmu_ssc0000340.1_g000007
rosa_roxburghii	Rroxscaffold_4G00306590 Rroxscaffold_5G00348510 Rroxscaffold_5G00360910 Rroxscaffold_6G00390930 Rroxscaffold_6G00415160 Rroxscaffold_6G00415170
rosa_rugosa	Rorug02G0113500 Rorug02G0178600 Rorug04G0146100
rosa_samantha	Rh1DG080400 Rh3DG141400 Rh4AG208600 Rh4BG088300 Rh4CG219600 Rh4DG206500 Rh6CG163700 Rh6DG155500 Rh7DG306400
rosa_wichuraiana	Rw4G017680 Rw7G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AciI	CCGC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
ApoI	RAATTY	1 cut(s)	161
BccI	CCATC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	120
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	101, 118
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	2 cut(s)	101, 118
BseRI	GAGGAG	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	47
BspACI	CCGC	1 cut(s)	11
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	101, 118
Bst2UI	CCWGG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstUI	CGCG	1 cut(s)	11
CviJI	RGCY	4 cut(s)	27, 92, 106, 152
CviKI_1	RGCY	4 cut(s)	27, 92, 106, 152
EcoRII	CCWGG	1 cut(s)	118
FaqI	GGGAC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	51
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	3 cut(s)	13, 105, 132
MaeI	CTAG	1 cut(s)	137
MboII	GAAGA	1 cut(s)	64
MluCI	AATT	2 cut(s)	126, 161
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	2 cut(s)	111, 119
MseI	TTAA	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	107
NmeAIII	GCCGAG	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 109
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	3 cut(s)	9, 29, 170
SgeI	CNNG	9 cut(s)	22, 31, 40, 66, 74, 114, 131, 132, 149
Sse9I	AATT	2 cut(s)	126, 161
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	118
TasI	AATT	2 cut(s)	126, 161
TauI	GCSGC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	101
XapI	RAATTY	1 cut(s)	161
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.