Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003646

Physical Location & Seq

Genomic Coordinates Reverse (-)

24140466 .. 24140975

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0146100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCCTCCACGACCATTTGTGGGTCTTCTGCCAGTGACTCTGCAGCTCCCCGCTCCAGTTCCCCAACCCCAATTCCAGCTTCGATCCCATTTCCAACCGGGCCTCCACCGAGCTCCACTTCTAAACCACCACTCAAACCCCCAATCTCTCACCCTCCTCTTACCCTGAATCTCAACAGTCCTTCCATCACTGTCACTTTCTCTAAATCCACCCATCACTACCCCATCAATGCCTCCCCCTCTTCTCTCCCCAACACAAGATTCCCCACCTCATCTGTTCTGCTCCACACACCCACCAAACCTTTCACCAGAATCTATGCCCACCCATTTGGATTCTCTTCAAAACCCACTTCCCAGATCCATGGTTTGAACCCAAAGTTCCCATCTTTGTTCTCCTCCAAACCCAGATCCCAAACCCAAAAGCTTCTTCTGCTTCAGAAGCCAACCCCAATGGAGATATTGAACCCACAGTTCCAAAGCCTAAAGTCACAACCGCCTAGCTTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrn_RNA_3

Protein Analysis

169

Amino Acids

18.05

Weight (kDa)

10.66

Isoelectric Point (pI)

66.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19300
fragaria_vesca	FvH4_4g14960 FvH4_4g14960 FvH4_4g14960
malus_domestica	MD13G1186800.v1.1 MD16G1187700.v1.1
prunus_persica	Prupe.1G154500_v2.0.a1
pyrus_communis	pycom13g16170 pycom16g15750
rosa_chinensis	RchiOBHm_Chr4g0417131
rosa_laevigata	RLG00000007929 RLG00000032566 RLG00000032567
rosa_multiflora	Rmu_ssc0000340.1_g000001 Rmu_ssc0000340.1_g000007
rosa_roxburghii	Rroxscaffold_4G00306590 Rroxscaffold_5G00348510 Rroxscaffold_5G00360910 Rroxscaffold_6G00390930 Rroxscaffold_6G00415160 Rroxscaffold_6G00415170
rosa_rugosa	Rorug02G0113500 Rorug02G0178600 Rorug04G0146100
rosa_samantha	Rh1DG080400 Rh3DG141400 Rh4AG208600 Rh4BG088300 Rh4CG219600 Rh4DG206500 Rh6CG163700 Rh6DG155500 Rh7DG306400
rosa_wichuraiana	Rw4G017680 Rw7G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AciI	CCGC	2 cut(s)	52, 494
AclWI	GGATC	3 cut(s)	79, 352, 402
AcuI	CTGAAG	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	342, 370, 463
AjuI	GAANNNNNNNTTGG	6 cut(s)	64, 96, 245, 277, 411, 443
AluBI	AGCT	5 cut(s)	47, 80, 114, 424, 501
AluI	AGCT	5 cut(s)	47, 80, 114, 424, 501
Alw21I	GWGCWC	1 cut(s)	116
AlwI	GGATC	3 cut(s)	79, 352, 402
AoxI	GGCC	2 cut(s)	3, 101
ApeKI	GCWGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	143, 298
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	4 cut(s)	194, 222, 233, 391
BcnI	CCSGG	1 cut(s)	100
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	361
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse1I	ACTGG	2 cut(s)	33, 57
BseDI	CCNNGG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	33, 57
BseRI	GAGGAG	2 cut(s)	147, 385
BseXI	GCAGC	1 cut(s)	56
BshFI	GGCC	2 cut(s)	5, 103
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	21
BsnI	GGCC	2 cut(s)	5, 103
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	84, 357, 407
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	2 cut(s)	52, 494
BspANI	GGCC	2 cut(s)	5, 103
BspMAI	CTGCAG	1 cut(s)	46
BspPI	GGATC	3 cut(s)	79, 352, 402
BsrBI	CCGCTC	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	33, 57
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	3 cut(s)	84, 357, 407
BssT1I	CCWWGG	1 cut(s)	361
Bst4CI	ACNGT	3 cut(s)	179, 193, 471
Bst6I	CTCTTC	2 cut(s)	247, 343
BstC8I	GCNNGC	1 cut(s)	503
BstDSI	CCRYGG	1 cut(s)	361
BstKTI	GATC	3 cut(s)	87, 360, 410
BstMBI	GATC	3 cut(s)	84, 357, 407
BstMWI	GCNNNNNNNGC	3 cut(s)	430, 439, 502
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	357, 407
BstXI	CCANNNNNNTGG	2 cut(s)	329, 362
BstYI	RGATCY	2 cut(s)	357, 407
BsuRI	GGCC	2 cut(s)	5, 103
BtgI	CCRYGG	1 cut(s)	361
BtsIMutI	CAGTG	2 cut(s)	40, 189
Cac8I	GCNNGC	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	101
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	9 cut(s)	5, 47, 80, 103, 114, 424, 442, 480, 501
CviKI_1	RGCY	9 cut(s)	5, 47, 80, 103, 114, 424, 442, 480, 501
DpnI	GATC	3 cut(s)	86, 359, 409
DpnII	GATC	3 cut(s)	84, 357, 407
Eam1104I	CTCTTC	2 cut(s)	247, 343
EarI	CTCTTC	2 cut(s)	247, 343
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	1 cut(s)	365
FaiI	YATR	2 cut(s)	318, 363
FatI	CATG	1 cut(s)	361
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	2 cut(s)	5, 103
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	1 cut(s)	365
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	5 cut(s)	38, 169, 261, 312, 333
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	2 cut(s)	143, 298
Hpy188I	TCNGA	1 cut(s)	438
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	3 cut(s)	179, 193, 471
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	3 cut(s)	430, 439, 502
Hsp92II	CATG	1 cut(s)	365
Kzo9I	GATC	3 cut(s)	84, 357, 407
LmnI	GCTCC	4 cut(s)	52, 59, 119, 288
LpnPI	CCDG	8 cut(s)	46, 70, 90, 112, 179, 322, 368, 418
Lsp1109I	GCAGC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	3 cut(s)	35, 193, 486
MalI	GATC	3 cut(s)	86, 359, 409
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	3 cut(s)	84, 357, 407
MboII	GAAGA	4 cut(s)	18, 234, 330, 419
MflI	RGATCY	2 cut(s)	357, 407
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	8 cut(s)	16, 114, 165, 168, 244, 250, 280, 406
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	430, 439, 502
NciI	CCSGG	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	361
NdeII	GATC	3 cut(s)	84, 357, 407
NlaIII	CATG	1 cut(s)	365
NmuCI	GTSAC	3 cut(s)	35, 193, 486
PfeI	GAWTC	4 cut(s)	169, 261, 312, 333
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	46
PsuI	RGATCY	2 cut(s)	357, 407
SacI	GAGCTC	1 cut(s)	116
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	3 cut(s)	84, 357, 407
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	7 cut(s)	49, 82, 116, 272, 304, 426, 503
SfcI	CTRYAG	1 cut(s)	42
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	2 cut(s)	52, 494
SspMI	CTAG	1 cut(s)	498
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	3 cut(s)	179, 193, 471
TaqI	TCGA	1 cut(s)	83
TasI	AATT	1 cut(s)	72
TfiI	GAWTC	4 cut(s)	169, 261, 312, 333
TscAI	CASTG	2 cut(s)	40, 196
TseFI	GTSAC	3 cut(s)	35, 193, 486
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	3 cut(s)	35, 193, 486
TspRI	CASTG	2 cut(s)	40, 196
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.