Rw7G026040

Putative RNA methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003646
Physical Location & Seq
Reverse (-)
32964239 .. 32972012
7774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026040.1

Sequence Viewer

Length: 672 bp
ATGGCCACTGCCATCAGACACGCTCAGGCCGAATTCGAAACATATGGGGACACCCCCATACCAGAGCTAAGATTTTCCACACCGGCCTCGACAATCCTGGATGAGCCACGAAAGAGGGAGTGGATTCGGAAAACTGCCACTCGCGTCACCTTTCCTAATCACACTCCAAATGGACCACTATATAATGTCCAGGACGGTATAGCATTCTGTGTGAGGTACCCGGAGAAAGCCACCAGAAACACCTATGTATCATTGTGGTTTCACCACGAAGCCTTGTTCTGTCCATTCCCGACAATCCCTAGACCTAGTGTCACACTAAAGGAAAGATCTCCAGATGGTGTTGTGACGTTAGTTGATGTGGGCTTGAGTAAGAATGTCGTCGTTGATCAAGTACTTGATCCTGGAACAAGAGTTACAGTGGCTATGGGAGACAGTTGGAATTTGGATGCTGATATATCACGGCAGGTTGTATCATCATCCAAGCCAAGGGAAGAAGCAGGGATGTATTGGGGGTACAAAGTGCACTATGCTTCCAATATCACTTCGGTAATGATTGAATGTCCATACGAGGGTGGCTATGATCATTTGATTGGGACCTCAGAGCATGGTCAGATTATCAATTCCTCCGATCTCACTATACCCACTTTCAGTTGCTGCTACTGCTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltrn_RNA_3

Protein Analysis

223

Amino Acids

25.04

Weight (kDa)

5.79

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltrn_RNA_3 PF02598 102 - 212 7.5e-27 Putative RNA methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 454
Acc65I GGTACC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 216
AccII CGCG 1 cut(s) 144
AclWI GGATC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 32, 439
AfaI GTAC 3 cut(s) 218, 393, 515
AfiI CCNNNNNNNGG 2 cut(s) 486, 569
AgsI TTSAA 1 cut(s) 557
AhdI GACNNNNNGTC 1 cut(s) 308
AjnI CCWGG 3 cut(s) 96, 189, 400
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 1 cut(s) 423
Alw44I GTGCAC 1 cut(s) 521
AlwI GGATC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 654
AoxI GGCC 3 cut(s) 3, 27, 84
ApaLI GTGCAC 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 654, 663
ApoI RAATTY 2 cut(s) 32, 439
Asp718I GGTACC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 173, 594
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 139, 254
AsuII TTCGAA 1 cut(s) 36
AvaII GGWCC 2 cut(s) 173, 594
BaeGI GKGCMC 1 cut(s) 525
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 2 cut(s) 641, 650
BccI CCATC 2 cut(s) 20, 329
BceAI ACGGC 1 cut(s) 476
BciT130I CCWGG 3 cut(s) 98, 191, 402
BclI TGATCA 2 cut(s) 385, 580
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 2 cut(s) 300, 306
BfuAI ACCTGC 1 cut(s) 454
BglII AGATCT 1 cut(s) 326
BisI GCNGC 2 cut(s) 655, 664
BlsI GCNGC 2 cut(s) 656, 665
BmcAI AGTACT 1 cut(s) 393
Bme1390I CCNGG 4 cut(s) 98, 191, 221, 402
Bme18I GGWCC 2 cut(s) 173, 594
BmeRI GACNNNNNGTC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 173, 594
BmiI GGNNCC 2 cut(s) 218, 595
BmrFI CCNGG 4 cut(s) 98, 191, 221, 402
BmsI GCATC 1 cut(s) 436
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 24
Bpu14I TTCGAA 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 385
BpuMI CCSGG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 485
Bsc4I CCNNNNNNNGG 2 cut(s) 486, 569
Bse118I RCCGGY 1 cut(s) 82
BseBI CCWGG 3 cut(s) 98, 191, 402
BseDI CCNNGG 1 cut(s) 485
BseGI GGATG 4 cut(s) 106, 451, 476, 507
BseLI CCNNNNNNNGG 2 cut(s) 486, 569
BseMII CTCAG 2 cut(s) 38, 612
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 2 cut(s) 641, 650
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 3 cut(s) 5, 29, 86
BshNI GGYRCC 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 525
BsiSI CCGG 2 cut(s) 83, 221
BslFI GGGAC 2 cut(s) 62, 607
BslI CCNNNNNNNGG 2 cut(s) 486, 569
BsmAI GTCTC 1 cut(s) 423
BsmFI GGGAC 2 cut(s) 62, 607
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 3 cut(s) 5, 29, 86
Bsp119I TTCGAA 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 5 cut(s) 326, 385, 397, 580, 628
BspANI GGCC 3 cut(s) 5, 29, 86
BspCNI CTCAG 2 cut(s) 37, 611
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 218, 595
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 1 cut(s) 392
BspT104I TTCGAA 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 485
BssMI GATC 5 cut(s) 326, 385, 397, 580, 628
BssT1I CCWWGG 1 cut(s) 485
Bst2UI CCWGG 3 cut(s) 98, 191, 402
Bst4CI ACNGT 3 cut(s) 197, 418, 434
BstBI TTCGAA 1 cut(s) 36
BstDEI CTNAG 3 cut(s) 24, 68, 598
BstF5I GGATG 4 cut(s) 106, 451, 476, 507
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 5 cut(s) 329, 388, 400, 583, 631
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 5 cut(s) 326, 385, 397, 580, 628
BstMWI GCNNNNNNNGC 2 cut(s) 660, 663
BstNI CCWGG 3 cut(s) 98, 191, 402
BstSCI CCNGG 4 cut(s) 96, 189, 219, 400
BstSLI GKGCMC 1 cut(s) 525
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 641, 650
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuRI GGCC 3 cut(s) 5, 29, 86
BtsCI GGATG 4 cut(s) 106, 451, 476, 507
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 2 cut(s) 6, 423
BveI ACCTGC 1 cut(s) 454
CaiI CAGNNNCTG 1 cut(s) 654
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 173, 594
CseI GACGC 1 cut(s) 133
Csp6I GTAC 3 cut(s) 217, 392, 514
CviAII CATG 1 cut(s) 605
CviQI GTAC 3 cut(s) 217, 392, 514
DdeI CTNAG 3 cut(s) 24, 68, 598
DpnI GATC 5 cut(s) 328, 387, 399, 582, 630
DpnII GATC 5 cut(s) 326, 385, 397, 580, 628
DriI GACNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 485
Eco47I GGWCC 2 cut(s) 173, 594
EcoO109I RGGNCCY 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 32
EcoRII CCWGG 3 cut(s) 96, 189, 400
EcoT14I CCWWGG 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 485
FaeI CATG 1 cut(s) 608
FaqI GGGAC 2 cut(s) 62, 607
FatI CATG 1 cut(s) 604
FauNDI CATATG 1 cut(s) 43
FbaI TGATCA 2 cut(s) 385, 580
Fnu4HI GCNGC 2 cut(s) 655, 664
FokI GGATG 4 cut(s) 113, 458, 463, 514
Fsp4HI GCNGC 2 cut(s) 655, 664
FspBI CTAG 2 cut(s) 300, 306
GluI GCNGC 2 cut(s) 655, 664
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 3 cut(s) 5, 29, 86
HapII CCGG 2 cut(s) 83, 221
HgaI GACGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 608
HinfI GANTC 1 cut(s) 124
HpaII CCGG 2 cut(s) 83, 221
HphI GGTGA 2 cut(s) 139, 254
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 5 cut(s) 17, 129, 601, 612, 628
Hpy188III TCNNGA 2 cut(s) 289, 332
Hpy8I GTNNAC 1 cut(s) 523
Hpy99I CGWCG 1 cut(s) 383
HpyCH4III ACNGT 3 cut(s) 197, 418, 434
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 1 cut(s) 523
HpyF10VI GCNNNNNNNGC 2 cut(s) 660, 663
HpyF3I CTNAG 3 cut(s) 24, 68, 598
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 1 cut(s) 608
KpnI GGTACC 1 cut(s) 220
Ksp22I TGATCA 2 cut(s) 385, 580
Kzo9I GATC 5 cut(s) 326, 385, 397, 580, 628
Lsp1109I GCAGC 2 cut(s) 641, 650
LweI GCATC 1 cut(s) 436
MaeI CTAG 2 cut(s) 300, 306
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 4 cut(s) 145, 310, 343, 412
MalI GATC 5 cut(s) 328, 387, 399, 582, 630
MboI GATC 5 cut(s) 326, 385, 397, 580, 628
MboII GAAGA 1 cut(s) 503
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 1 cut(s) 525
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 32, 439, 619
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 6 cut(s) 97, 108, 207, 562, 607, 634
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 83, 221
MspR9I CCNGG 4 cut(s) 98, 191, 221, 402
Mva1269I GAATGC 1 cut(s) 203
MvaI CCWGG 3 cut(s) 98, 191, 402
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 660, 663
NciI CCSGG 1 cut(s) 221
NdeI CATATG 1 cut(s) 43
NdeII GATC 5 cut(s) 326, 385, 397, 580, 628
NlaIII CATG 1 cut(s) 608
NlaIV GGNNCC 2 cut(s) 218, 595
NmuCI GTSAC 3 cut(s) 145, 310, 343
NspV TTCGAA 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PctI GAATGC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 124
PfoI TCCNGGA 3 cut(s) 96, 189, 400
PkrI GCNGC 2 cut(s) 656, 665
PpuMI RGGWCCY 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 594
Psp6I CCWGG 3 cut(s) 96, 189, 400
PspGI CCWGG 3 cut(s) 96, 189, 400
PspN4I GGNNCC 2 cut(s) 218, 595
PspPI GGNCC 2 cut(s) 173, 594
PspPPI RGGWCCY 1 cut(s) 594
PsrI GAACNNNNNNTAC 2 cut(s) 397, 429
PstNI CAGNNNCTG 1 cut(s) 654
PsuI RGATCY 1 cut(s) 326
RsaI GTAC 3 cut(s) 218, 393, 515
RsaNI GTAC 3 cut(s) 217, 392, 514
SatI GCNGC 2 cut(s) 655, 664
Sau3AI GATC 5 cut(s) 326, 385, 397, 580, 628
Sau96I GGNCC 2 cut(s) 173, 594
ScaI AGTACT 1 cut(s) 393
ScrFI CCNGG 4 cut(s) 98, 191, 221, 402
SduI GDGCHC 1 cut(s) 525
SetI ASST 8 cut(s) 69, 152, 218, 245, 307, 350, 468, 599
SfaNI GCATC 1 cut(s) 436
SfuI TTCGAA 1 cut(s) 36
SinI GGWCC 2 cut(s) 173, 594
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 3 cut(s) 32, 439, 619
SspMI CTAG 2 cut(s) 300, 306
StyD4I CCNGG 4 cut(s) 96, 189, 219, 400
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 3 cut(s) 197, 418, 434
TaiI ACGT 1 cut(s) 350
TaqI TCGA 2 cut(s) 36, 89
TasI AATT 3 cut(s) 32, 439, 619
TatI WGTACW 1 cut(s) 391
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 2 cut(s) 13, 423
TseFI GTSAC 3 cut(s) 145, 310, 343
TseI GCWGC 2 cut(s) 654, 663
Tsp45I GTSAC 3 cut(s) 145, 310, 343
TspRI CASTG 2 cut(s) 13, 423
VneI GTGCAC 1 cut(s) 521
VpaK11BI GGWCC 2 cut(s) 173, 594
XapI RAATTY 2 cut(s) 32, 439
XspI CTAG 2 cut(s) 300, 306
ZrmI AGTACT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.