Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000340.1

Orthogroup ID

OG0003646

Physical Location & Seq

Genomic Coordinates Forward (+)

73583 .. 75963

Gene Structure 2381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000340.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgaaatttgttaggcatctattgattgctttcggtggacttgctggattggaagagagcattgaagaggatcataacttaaaggcaaagaatgtgcgggaggtgtttaatatatatttaaacacatgtccgcatcaggggagtcgaacaatacgaacagaggaagcaattttaatttcacttcaatatttccaagaaccaatcaacagagcactgcagagaagtcagcagtcgcctggagaagaagtcaggaagtgcaaggtagcagcaaagctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrn_RNA_3

Protein Analysis

92

Amino Acids

10.52

Weight (kDa)

8.69

Isoelectric Point (pI)

76.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19300
fragaria_vesca	FvH4_4g14960 FvH4_4g14960 FvH4_4g14960
malus_domestica	MD13G1186800.v1.1 MD16G1187700.v1.1
prunus_persica	Prupe.1G154500_v2.0.a1
pyrus_communis	pycom13g16170 pycom16g15750
rosa_chinensis	RchiOBHm_Chr4g0417131
rosa_laevigata	RLG00000007929 RLG00000032566 RLG00000032567
rosa_multiflora	Rmu_ssc0000340.1_g000001 Rmu_ssc0000340.1_g000007
rosa_roxburghii	Rroxscaffold_4G00306590 Rroxscaffold_5G00348510 Rroxscaffold_5G00360910 Rroxscaffold_6G00390930 Rroxscaffold_6G00415160 Rroxscaffold_6G00415170
rosa_rugosa	Rorug02G0113500 Rorug02G0178600 Rorug04G0146100
rosa_samantha	Rh1DG080400 Rh3DG141400 Rh4AG208600 Rh4BG088300 Rh4CG219600 Rh4DG206500 Rh6CG163700 Rh6DG155500 Rh7DG306400
rosa_wichuraiana	Rw4G017680 Rw7G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	97, 131
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	65, 185
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Alw21I	GWGCWC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	237
BfaI	CTAG	1 cut(s)	277
BfmI	CTRYAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	25, 142
BpmI	CTGGAG	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	2 cut(s)	97, 131
BspMAI	CTGCAG	1 cut(s)	219
BspPI	GGATC	1 cut(s)	78
BssMI	GATC	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	237
Bst6I	CTCTTC	2 cut(s)	48, 60
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	212
CviAII	CATG	1 cut(s)	126
CviJI	RGCY	1 cut(s)	274
CviKI_1	RGCY	1 cut(s)	274
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DraI	TTTAAA	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	48, 60
EarI	CTCTTC	2 cut(s)	48, 60
EcoRII	CCWGG	1 cut(s)	235
FaeI	CATG	1 cut(s)	129
FaiI	YATR	4 cut(s)	75, 113, 115, 127
FatI	CATG	1 cut(s)	125
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	277
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	258
Hin1II	CATG	1 cut(s)	129
HinfI	GANTC	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	217, 258
Hsp92II	CATG	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	5 cut(s)	30, 122, 222, 235, 249
LweI	GCATC	2 cut(s)	25, 142
MaeI	CTAG	1 cut(s)	277
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	3 cut(s)	65, 77, 254
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	3 cut(s)	5, 168, 174
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	3 cut(s)	61, 94, 154
MseI	TTAA	4 cut(s)	80, 108, 119, 173
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	129
NspI	RCATGY	1 cut(s)	129
PciI	ACATGT	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PscI	ACATGT	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	219
SaqAI	TTAA	4 cut(s)	80, 108, 119, 173
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	3 cut(s)	105, 264, 276
SfaNI	GCATC	2 cut(s)	25, 142
SfcI	CTRYAG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	5, 168, 174
SsiI	CCGC	2 cut(s)	97, 131
SspI	AATATT	1 cut(s)	188
SspMI	CTAG	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	235
TaqI	TCGA	1 cut(s)	145
TasI	AATT	3 cut(s)	5, 168, 174
Tru1I	TTAA	4 cut(s)	80, 108, 119, 173
Tru9I	TTAA	4 cut(s)	80, 108, 119, 173
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	129
XspI	CTAG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.