Rh6CG163700

Putative RNA methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003646
Physical Location & Seq
Reverse (-)
22269985 .. 22285410
15426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG163700.1

Sequence Viewer

Length: 723 bp
ATGGAGGTCGCGACATTCGTGCTGTGCTGGTGGGACGATATCAACGAGTCGACTCAGTGGCAAGACGACATCTTTTACGCTCTCTGCACAGCCGAACCCCCTCGACTCCTCCGTCGCTCTGGTGTCACACTAAAGGAAAGATCTCCAGACGGTGTTGGGACGTTAGTTGATGTGGGCTTGAGTAAGAATGTCGTTGTTGATCAAGTACTTGATCCTAGAACAAGAGTTACAGTGGCTATGGGAGACAGTTGGAATTTGGATGCTGATATATCACAGCAGGTTGGATCATCATCCAAGCCAAGGGAAGAAGCAGGGATGTATTGGGGGTACAAAGTGCACTATGCTTCCAATATCACTTCGGTAATGATTGAATCTCCATACGAGCATGAGAGCTTGAAGGAACAGCATGAGCTTCTCCAGAAAGTAGTGAAGCCTTTGACGGGTCATTTAGAGATCTTAGTACCCAATGGTGGCCTTAACACTCACCGTTCTTCAGTAAGTGCTGACGGTGGAGGACAAGCCCGACGAGCAGATCGCAACCCTAGATCGGGTGGACGACGACGATCTGGAGGTGCTAAGAGAGAGGAGGCTCCAGTAGATGAACATGGAATGGATTTTCGGGTGAAGATTCAGAGGACCCAATTATATGATTCCAATTCCAAATTGGAATTATGGAGGCTGTGGTCTTTTAGGGCCCGAATCCTTTTCGCCAGCGGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltrn_RNA_3

Protein Analysis

240

Amino Acids

27.0

Weight (kDa)

6.61

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltrn_RNA_3 PF02598 39 - 129 2.4e-18 Putative RNA methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 111
Acc36I ACCTGC 1 cut(s) 268
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 714
AclWI GGATC 2 cut(s) 206, 292
AcsI RAATTY 1 cut(s) 253
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 3 cut(s) 207, 329, 462
AfiI CCNNNNNNNGG 5 cut(s) 300, 440, 470, 547, 548
AgsI TTSAA 2 cut(s) 371, 397
AluBI AGCT 2 cut(s) 393, 412
AluI AGCT 2 cut(s) 393, 412
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 237
Alw44I GTGCAC 1 cut(s) 335
AlwI GGATC 2 cut(s) 206, 292
AoxI GGCC 2 cut(s) 472, 693
ApaI GGGCCC 1 cut(s) 697
ApaLI GTGCAC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 253
AspS9I GGNCC 3 cut(s) 636, 693, 694
AsuHPI GGTGA 2 cut(s) 476, 634
AvaII GGWCC 1 cut(s) 636
BaeGI GKGCMC 2 cut(s) 339, 697
BanII GRGCYC 1 cut(s) 697
Bbv12I GWGCWC 1 cut(s) 339
BcgI CGANNNNNNTGC 1 cut(s) 35
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 2 cut(s) 216, 543
BfuAI ACCTGC 1 cut(s) 268
BglII AGATCT 2 cut(s) 140, 453
BisI GCNGC 1 cut(s) 715
BlsI GCNGC 1 cut(s) 716
BmcAI AGTACT 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 636
BmgT120I GGNCC 3 cut(s) 636, 693, 694
BmiI GGNNCC 3 cut(s) 591, 638, 695
BmsI GCATC 1 cut(s) 250
BpmI CTGGAG 4 cut(s) 129, 401, 576, 588
BpuEI CTTGAG 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 5 cut(s) 300, 440, 470, 547, 548
Bse1I ACTGG 1 cut(s) 593
Bse8I GATNNNNATC 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 3 cut(s) 265, 290, 321
BseJI GATNNNNATC 1 cut(s) 289
BseLI CCNNNNNNNGG 5 cut(s) 300, 440, 470, 547, 548
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 593
BseRI GAGGAG 2 cut(s) 98, 599
BseSI GKGCMC 2 cut(s) 339, 697
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 474, 695
BsiHKAI GWGCWC 1 cut(s) 339
BslFI GGGAC 2 cut(s) 47, 172
BslI CCNNNNNNNGG 5 cut(s) 300, 440, 470, 547, 548
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 2 cut(s) 47, 172
BsnI GGCC 2 cut(s) 474, 695
Bsp120I GGGCCC 1 cut(s) 693
Bsp1286I GDGCHC 2 cut(s) 339, 697
Bsp143I GATC 8 cut(s) 140, 199, 211, 284, 453, 532, 545, 563
Bsp68I TCGCGA 1 cut(s) 11
BspACI CCGC 1 cut(s) 714
BspANI GGCC 2 cut(s) 474, 695
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 3 cut(s) 591, 638, 695
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 2 cut(s) 206, 292
BsrI ACTGG 1 cut(s) 593
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 8 cut(s) 140, 199, 211, 284, 453, 532, 545, 563
BssT1I CCWWGG 1 cut(s) 299
Bst4CI ACNGT 5 cut(s) 152, 232, 248, 488, 509
BstC8I GCNNGC 1 cut(s) 712
BstDEI CTNAG 3 cut(s) 54, 457, 576
BstF5I GGATG 3 cut(s) 265, 290, 321
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 8 cut(s) 143, 202, 214, 287, 456, 535, 548, 566
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 8 cut(s) 140, 199, 211, 284, 453, 532, 545, 563
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstSLI GKGCMC 2 cut(s) 339, 697
BstUI CGCG 1 cut(s) 11
BstX2I RGATCY 2 cut(s) 140, 453
BstYI RGATCY 2 cut(s) 140, 453
BsuRI GGCC 2 cut(s) 474, 695
BtsCI GGATG 3 cut(s) 265, 290, 321
BtsIMutI CAGTG 2 cut(s) 62, 237
BtuMI TCGCGA 1 cut(s) 11
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 712
Cfr13I GGNCC 3 cut(s) 636, 693, 694
Csp6I GTAC 3 cut(s) 206, 328, 461
CviAII CATG 3 cut(s) 386, 407, 605
CviQI GTAC 3 cut(s) 206, 328, 461
DdeI CTNAG 3 cut(s) 54, 457, 576
DpnI GATC 8 cut(s) 142, 201, 213, 286, 455, 534, 547, 565
DpnII GATC 8 cut(s) 140, 199, 211, 284, 453, 532, 545, 563
DrdI GACNNNNNNGTC 1 cut(s) 111
DseDI GACNNNNNNGTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 697
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 636
Eco57I CTGAAG 1 cut(s) 477
EcoO109I RGGNCCY 2 cut(s) 636, 693
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 3 cut(s) 389, 410, 608
FaqI GGGAC 2 cut(s) 47, 172
FatI CATG 3 cut(s) 385, 406, 604
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 715
FokI GGATG 3 cut(s) 272, 277, 328
FriOI GRGCYC 1 cut(s) 697
Fsp4HI GCNGC 1 cut(s) 715
FspBI CTAG 2 cut(s) 216, 543
GluI GCNGC 1 cut(s) 715
GsuI CTGGAG 4 cut(s) 129, 401, 576, 588
HaeIII GGCC 2 cut(s) 474, 695
Hin1II CATG 3 cut(s) 389, 410, 608
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 7 cut(s) 47, 52, 105, 371, 628, 650, 699
HphI GGTGA 2 cut(s) 476, 634
Hpy166II GTNNAC 3 cut(s) 51, 337, 554
Hpy188I TCNGA 1 cut(s) 633
Hpy188III TCNNGA 4 cut(s) 10, 146, 418, 567
Hpy8I GTNNAC 3 cut(s) 51, 337, 554
Hpy99I CGWCG 4 cut(s) 117, 528, 561, 564
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 5 cut(s) 152, 232, 248, 488, 509
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 87, 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 3 cut(s) 54, 457, 576
HpySE526I ACGT 1 cut(s) 161
Hsp92II CATG 3 cut(s) 389, 410, 608
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 8 cut(s) 140, 199, 211, 284, 453, 532, 545, 563
LmnI GCTCC 1 cut(s) 595
LpnPI CCDG 8 cut(s) 13, 105, 159, 263, 297, 431, 552, 606
LweI GCATC 1 cut(s) 250
MaeI CTAG 2 cut(s) 216, 543
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 2 cut(s) 124, 226
MalI GATC 8 cut(s) 142, 201, 213, 286, 455, 534, 547, 565
MboI GATC 8 cut(s) 140, 199, 211, 284, 453, 532, 545, 563
MboII GAAGA 3 cut(s) 317, 483, 637
MflI RGATCY 2 cut(s) 140, 453
MhlI GDGCHC 2 cut(s) 339, 697
MluCI AATT 5 cut(s) 253, 641, 655, 662, 668
MlyI GAGTC 3 cut(s) 46, 56, 99
MmeI TCCRAC 2 cut(s) 230, 262
MnlI CCTC 8 cut(s) 111, 119, 506, 563, 577, 580, 627, 669
MseI TTAA 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 714
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 527
NdeII GATC 8 cut(s) 140, 199, 211, 284, 453, 532, 545, 563
NlaIII CATG 3 cut(s) 389, 410, 608
NlaIV GGNNCC 3 cut(s) 591, 638, 695
NmuCI GTSAC 1 cut(s) 124
NruI TCGCGA 1 cut(s) 11
PcsI WCGNNNNNNNCGW 3 cut(s) 15, 42, 109
PfeI GAWTC 4 cut(s) 371, 628, 650, 699
PkrI GCNGC 1 cut(s) 716
PleI GAGTC 3 cut(s) 46, 55, 99
PpsI GAGTC 3 cut(s) 46, 55, 99
PpuMI RGGWCCY 1 cut(s) 636
Psp5II RGGWCCY 1 cut(s) 636
PspN4I GGNNCC 3 cut(s) 591, 638, 695
PspOMI GGGCCC 1 cut(s) 693
PspPI GGNCC 3 cut(s) 636, 693, 694
PspPPI RGGWCCY 1 cut(s) 636
PsrI GAACNNNNNNTAC 2 cut(s) 211, 243
PsuI RGATCY 2 cut(s) 140, 453
RruI TCGCGA 1 cut(s) 11
RsaI GTAC 3 cut(s) 207, 329, 462
RsaNI GTAC 3 cut(s) 206, 328, 461
SalI GTCGAC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 1 cut(s) 715
Sau3AI GATC 8 cut(s) 140, 199, 211, 284, 453, 532, 545, 563
Sau96I GGNCC 3 cut(s) 636, 693, 694
ScaI AGTACT 1 cut(s) 207
SchI GAGTC 3 cut(s) 46, 56, 99
SduI GDGCHC 2 cut(s) 339, 697
SetI ASST 6 cut(s) 9, 164, 282, 395, 414, 574
SfaNI GCATC 1 cut(s) 250
SinI GGWCC 1 cut(s) 636
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 5 cut(s) 253, 641, 655, 662, 668
SsiI CCGC 1 cut(s) 714
SspMI CTAG 2 cut(s) 216, 543
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 5 cut(s) 152, 232, 248, 488, 509
TaiI ACGT 1 cut(s) 164
TaqI TCGA 2 cut(s) 50, 103
TasI AATT 5 cut(s) 253, 641, 655, 662, 668
TatI WGTACW 1 cut(s) 205
TauI GCSGC 1 cut(s) 717
TfiI GAWTC 4 cut(s) 371, 628, 650, 699
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 2 cut(s) 62, 237
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 615
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 2 cut(s) 62, 237
VneI GTGCAC 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 636
XapI RAATTY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XmiI GTMKAC 1 cut(s) 50
XspI CTAG 2 cut(s) 216, 543
ZrmI AGTACT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.