Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003646

Physical Location & Seq

Genomic Coordinates Reverse (-)

35761417 .. 35764730

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG306400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGGTCACGGCATTCGTGCTGTGCTGGTGGGACGACATCAACAAGTCGACTCATTGGCAAGACGACATCTTCTACGCTCTCTGCACAGCCGAACCCCCTCAGCTCCTCCGTCGCTCTGGTGTCACACTAAAGGAAAGATCTCCAGATGGTGTTGTGACGTTAGTTGATGTGGGCTTGAGTAAGAATGTCGTCGTTGATCAAGTACTTGATCCTGGAACAAGAGTTACAGTGGCTATGGGAGACAGTTGGAATTTGGATGCTGATATATCACGGCAGGTTGTATCATCATCCAAGCCAAGGGAAGAAGCAGGGATGTATTGGGGGTACAAAGTGCACTATGCTTCCAATATCACTTCGGTAATGATTGAATGTCCATACGAGGTTGACTCTCATAGAAAGGCAGTTGCTGCTACTGCTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAAGTTGTTGATCCAAAATCTGGTGATGATGGGATTCGAAATACAACATTGTCAGACCTAGCAAAGTTGAAGCCTCTGTTTAAGAAAGATGGGACCACGTACCACTGCTGGTATTCTTCTTACAGAGCATGCATATTAAAGCTAGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrn_RNA_3

Protein Analysis

203

Amino Acids

22.66

Weight (kDa)

6.42

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltrn_RNA_3	PF02598	38 - 133	2.4e-21	Putative RNA methyltransferase
Thiolase_N	PF00108	129 - 186	4.5e-13	Thiolase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19300
fragaria_vesca	FvH4_4g14960 FvH4_4g14960 FvH4_4g14960
malus_domestica	MD13G1186800.v1.1 MD16G1187700.v1.1
prunus_persica	Prupe.1G154500_v2.0.a1
pyrus_communis	pycom13g16170 pycom16g15750
rosa_chinensis	RchiOBHm_Chr4g0417131
rosa_laevigata	RLG00000007929 RLG00000032566 RLG00000032567
rosa_multiflora	Rmu_ssc0000340.1_g000001 Rmu_ssc0000340.1_g000007
rosa_roxburghii	Rroxscaffold_4G00306590 Rroxscaffold_5G00348510 Rroxscaffold_5G00360910 Rroxscaffold_6G00390930 Rroxscaffold_6G00415160 Rroxscaffold_6G00415170
rosa_rugosa	Rorug02G0113500 Rorug02G0178600 Rorug04G0146100
rosa_samantha	Rh1DG080400 Rh3DG141400 Rh4AG208600 Rh4BG088300 Rh4CG219600 Rh4DG206500 Rh6CG163700 Rh6DG155500 Rh7DG306400
rosa_wichuraiana	Rw4G017680 Rw7G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	50
AclWI	GGATC	2 cut(s)	206, 464
AcsI	RAATTY	1 cut(s)	253
AfaI	GTAC	3 cut(s)	207, 329, 560
AfiI	CCNNNNNNNGG	2 cut(s)	300, 479
AgsI	TTSAA	2 cut(s)	371, 529
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	2 cut(s)	106, 601
AluI	AGCT	2 cut(s)	106, 601
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	237
Alw44I	GTGCAC	1 cut(s)	335
AlwI	GGATC	2 cut(s)	206, 464
AlwNI	CAGNNNCTG	1 cut(s)	410
ApaLI	GTGCAC	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	410, 419
ApoI	RAATTY	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	552
AsuHPI	GGTGA	1 cut(s)	494
AsuII	TTCGAA	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	339
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	397, 406
BccI	CCATC	3 cut(s)	143, 482, 542
BceAI	ACGGC	2 cut(s)	27, 290
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	2 cut(s)	518, 602
BfuAI	ACCTGC	1 cut(s)	268
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	2 cut(s)	411, 420
BlsI	GCNGC	2 cut(s)	412, 421
BmcAI	AGTACT	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	1 cut(s)	553
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpmI	CTGGAG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	496
BpuEI	CTTGAG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 479
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	3 cut(s)	265, 290, 321
BseLI	CCNNNNNNNGG	2 cut(s)	300, 479
BseMII	CTCAG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	397, 406
BsgI	GTGCAG	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	339
BslFI	GGGAC	2 cut(s)	47, 565
BslI	CCNNNNNNNGG	2 cut(s)	300, 479
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	2 cut(s)	47, 565
BsmI	GAATGC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	4 cut(s)	140, 199, 211, 469
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	553
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	206, 464
BspT104I	TTCGAA	1 cut(s)	496
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	4 cut(s)	140, 199, 211, 469
BssT1I	CCWWGG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	232, 248
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstBAI	YACGTR	1 cut(s)	558
BstBI	TTCGAA	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	3 cut(s)	265, 290, 321
BstKTI	GATC	4 cut(s)	143, 202, 214, 472
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	4 cut(s)	140, 199, 211, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 416, 419
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	591
BstSCI	CCNGG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	397, 406
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BtsCI	GGATG	3 cut(s)	265, 290, 321
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	237, 562
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	589
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	552
Csp6I	GTAC	3 cut(s)	206, 328, 559
CviAII	CATG	1 cut(s)	588
CviJI	RGCY	7 cut(s)	92, 106, 177, 236, 298, 532, 601
CviKI_1	RGCY	7 cut(s)	92, 106, 177, 236, 298, 532, 601
CviQI	GTAC	3 cut(s)	206, 328, 559
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	4 cut(s)	142, 201, 213, 471
DpnII	GATC	4 cut(s)	140, 199, 211, 469
DraI	TTTAAA	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	1 cut(s)	591
FaiI	YATR	7 cut(s)	239, 269, 342, 379, 396, 589, 593
FaqI	GGGAC	2 cut(s)	47, 565
FatI	CATG	1 cut(s)	587
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	2 cut(s)	411, 420
FokI	GGATG	3 cut(s)	272, 277, 328
Fsp4HI	GCNGC	2 cut(s)	411, 420
FspBI	CTAG	2 cut(s)	518, 602
GluI	GCNGC	2 cut(s)	411, 420
GsuI	CTGGAG	1 cut(s)	129
Hin1II	CATG	1 cut(s)	591
HincII	GTYRAC	2 cut(s)	51, 388
HindII	GTYRAC	2 cut(s)	51, 388
HinfI	GANTC	3 cut(s)	52, 389, 493
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	3 cut(s)	51, 337, 388
Hpy188I	TCNGA	1 cut(s)	514
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	3 cut(s)	51, 337, 388
Hpy99I	CGWCG	2 cut(s)	117, 197
HpyCH4III	ACNGT	2 cut(s)	232, 248
HpyCH4IV	ACGT	2 cut(s)	161, 557
HpyCH4V	TGCA	3 cut(s)	87, 337, 591
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 416, 419
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	2 cut(s)	161, 557
Hsp92II	CATG	1 cut(s)	591
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	140, 199, 211, 469
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	2 cut(s)	397, 406
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	518, 602
MaeII	ACGT	2 cut(s)	161, 557
MaeIII	GTNAC	4 cut(s)	7, 124, 157, 226
MalI	GATC	4 cut(s)	142, 201, 213, 471
MboI	GATC	4 cut(s)	140, 199, 211, 469
MboII	GAAGA	3 cut(s)	64, 317, 567
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	2 cut(s)	253, 441
MlyI	GAGTC	2 cut(s)	46, 383
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	4 cut(s)	111, 119, 376, 543
Mph1103I	ATGCAT	1 cut(s)	593
MseI	TTAA	4 cut(s)	432, 540, 596, 606
MspR9I	CCNGG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	410, 416, 419
NdeII	GATC	4 cut(s)	140, 199, 211, 469
NlaIII	CATG	1 cut(s)	591
NlaIV	GGNNCC	1 cut(s)	553
NmuCI	GTSAC	3 cut(s)	7, 124, 157
NsiI	ATGCAT	1 cut(s)	593
NspI	RCATGY	1 cut(s)	591
NspV	TTCGAA	1 cut(s)	496
PaeI	GCATGC	1 cut(s)	591
PctI	GAATGC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	493
PflMI	CCANNNNNTGG	1 cut(s)	479
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	412, 421
PleI	GAGTC	2 cut(s)	46, 383
PpsI	GAGTC	2 cut(s)	46, 383
Ppu21I	YACGTR	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	1 cut(s)	552
PsrI	GAACNNNNNNTAC	2 cut(s)	211, 243
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	3 cut(s)	207, 329, 560
RsaNI	GTAC	3 cut(s)	206, 328, 559
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	4 cut(s)	432, 540, 596, 606
SatI	GCNGC	2 cut(s)	411, 420
Sau3AI	GATC	4 cut(s)	140, 199, 211, 469
Sau96I	GGNCC	1 cut(s)	552
ScaI	AGTACT	1 cut(s)	207
SchI	GAGTC	2 cut(s)	46, 383
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	8 cut(s)	9, 108, 164, 282, 387, 519, 560, 603
SfaNI	GCATC	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	496
SinI	GGWCC	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
SphI	GCATGC	1 cut(s)	591
Sse9I	AATT	2 cut(s)	253, 441
SspMI	CTAG	2 cut(s)	518, 602
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	2 cut(s)	232, 248
TaiI	ACGT	2 cut(s)	164, 560
TaqI	TCGA	2 cut(s)	50, 496
TasI	AATT	2 cut(s)	253, 441
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	4 cut(s)	432, 540, 596, 606
Tru9I	TTAA	4 cut(s)	432, 540, 596, 606
TscAI	CASTG	2 cut(s)	237, 569
TseFI	GTSAC	3 cut(s)	7, 124, 157
TseI	GCWGC	2 cut(s)	410, 419
Tsp45I	GTSAC	3 cut(s)	7, 124, 157
TspDTI	ATGAA	1 cut(s)	453
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	237, 569
Van91I	CCANNNNNTGG	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	552
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	591
XmiI	GTMKAC	1 cut(s)	50
XspI	CTAG	2 cut(s)	518, 602
ZrmI	AGTACT	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.