Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003646

Physical Location & Seq

Genomic Coordinates Reverse (-)

16518041 .. 16519447

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032567

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAGATCGCAGCGTTCGTGCTGTGCTGGTGGGACGACATCAACGAGTCGACTCAGTGGCAAGACGGCATCTTCTACTCTCTCTGCACAGCTGACCCCCCTCGGCTGCTCCGTCGCTCTGGTGTCACACTAAAGGAAAGATCTCCAGACGGTGTTGGGACGTTAGTTGATGTGGGCTTGAGTAAGAATTTCGTCGTTGATCAAGTACTTGATCCTGGAACAAGAGTTACAGTGGCTATGGGAGACAGTTGGAATTTGGATGCTGGTGGCTATGATCATTTGATTGGGACCTCAGAGCATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrn_RNA_3

Protein Analysis

102

Amino Acids

11.08

Weight (kDa)

4.35

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19300
fragaria_vesca	FvH4_4g14960 FvH4_4g14960 FvH4_4g14960
malus_domestica	MD13G1186800.v1.1 MD16G1187700.v1.1
prunus_persica	Prupe.1G154500_v2.0.a1
pyrus_communis	pycom13g16170 pycom16g15750
rosa_chinensis	RchiOBHm_Chr4g0417131
rosa_laevigata	RLG00000007929 RLG00000032566 RLG00000032567
rosa_multiflora	Rmu_ssc0000340.1_g000001 Rmu_ssc0000340.1_g000007
rosa_roxburghii	Rroxscaffold_4G00306590 Rroxscaffold_5G00348510 Rroxscaffold_5G00360910 Rroxscaffold_6G00390930 Rroxscaffold_6G00415160 Rroxscaffold_6G00415170
rosa_rugosa	Rorug02G0113500 Rorug02G0178600 Rorug04G0146100
rosa_samantha	Rh1DG080400 Rh3DG141400 Rh4AG208600 Rh4BG088300 Rh4CG219600 Rh4DG206500 Rh6CG163700 Rh6DG155500 Rh7DG306400
rosa_wichuraiana	Rw4G017680 Rw7G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	50
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	2 cut(s)	187, 253
AfaI	GTAC	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	11, 106
ApoI	RAATTY	2 cut(s)	187, 253
AspS9I	GGNCC	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	23, 93
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	2 cut(s)	199, 274
BcoDI	GTCTC	1 cut(s)	237
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	2 cut(s)	12, 107
BlsI	GCNGC	2 cut(s)	13, 108
BmcAI	AGTACT	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	78, 250
BpmI	CTGGAG	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	68, 306
BseXI	GCAGC	2 cut(s)	23, 93
BsgI	GTGCAG	1 cut(s)	70
BslFI	GGGAC	3 cut(s)	47, 172, 301
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	3 cut(s)	47, 172, 301
Bsp143I	GATC	5 cut(s)	6, 140, 199, 211, 274
BspCNI	CTCAG	2 cut(s)	67, 305
BspLI	GGNNCC	1 cut(s)	289
BspPI	GGATC	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	5 cut(s)	6, 140, 199, 211, 274
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	3 cut(s)	152, 232, 248
BstDEI	CTNAG	2 cut(s)	54, 292
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	5 cut(s)	9, 143, 202, 214, 277
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	5 cut(s)	6, 140, 199, 211, 274
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	23, 93
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	62, 237
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	5 cut(s)	92, 106, 177, 236, 270
CviKI_1	RGCY	5 cut(s)	92, 106, 177, 236, 270
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	2 cut(s)	54, 292
DpnI	GATC	5 cut(s)	8, 142, 201, 213, 276
DpnII	GATC	5 cut(s)	6, 140, 199, 211, 274
Eco47I	GGWCC	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	1 cut(s)	302
FaiI	YATR	3 cut(s)	239, 273, 300
FaqI	GGGAC	3 cut(s)	47, 172, 301
FatI	CATG	1 cut(s)	298
FbaI	TGATCA	2 cut(s)	199, 274
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	2 cut(s)	12, 107
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	12, 107
GluI	GCNGC	2 cut(s)	12, 107
GsuI	CTGGAG	1 cut(s)	129
Hin1II	CATG	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	2 cut(s)	47, 52
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	2 cut(s)	117, 197
HpyCH4III	ACNGT	3 cut(s)	152, 232, 248
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	87
HpyF3I	CTNAG	2 cut(s)	54, 292
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	302
Ksp22I	TGATCA	2 cut(s)	199, 274
Kzo9I	GATC	5 cut(s)	6, 140, 199, 211, 274
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	6 cut(s)	13, 105, 159, 201, 228, 249
Lsp1109I	GCAGC	2 cut(s)	23, 93
LweI	GCATC	2 cut(s)	78, 250
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	124, 226
MalI	GATC	5 cut(s)	8, 142, 201, 213, 276
MboI	GATC	5 cut(s)	6, 140, 199, 211, 274
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	1 cut(s)	140
MluCI	AATT	2 cut(s)	187, 253
MlyI	GAGTC	2 cut(s)	46, 56
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	2 cut(s)	111, 301
MspA1I	CMGCKG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
NdeII	GATC	5 cut(s)	6, 140, 199, 211, 274
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	289
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	3 cut(s)	15, 42, 109
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	13, 108
PleI	GAGTC	2 cut(s)	46, 55
PpsI	GAGTC	2 cut(s)	46, 55
PpuMI	RGGWCCY	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	288
PspPPI	RGGWCCY	1 cut(s)	288
PsrI	GAACNNNNNNTAC	2 cut(s)	211, 243
PsuI	RGATCY	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SalI	GTCGAC	1 cut(s)	49
SatI	GCNGC	2 cut(s)	12, 107
Sau3AI	GATC	5 cut(s)	6, 140, 199, 211, 274
Sau96I	GGNCC	1 cut(s)	288
ScaI	AGTACT	1 cut(s)	207
SchI	GAGTC	2 cut(s)	46, 56
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	3 cut(s)	94, 164, 293
SfaNI	GCATC	2 cut(s)	78, 250
SinI	GGWCC	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	2 cut(s)	187, 253
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	3 cut(s)	152, 232, 248
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	50
TasI	AATT	2 cut(s)	187, 253
TatI	WGTACW	1 cut(s)	205
TscAI	CASTG	2 cut(s)	62, 237
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	2 cut(s)	11, 106
Tsp45I	GTSAC	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	62, 237
VpaK11BI	GGWCC	1 cut(s)	288
XapI	RAATTY	2 cut(s)	187, 253
XmiI	GTMKAC	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.