Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003646

Physical Location & Seq

Genomic Coordinates Reverse (-)

6914141 .. 6914714

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGTATTGGGGGTACAAAGTGCACTATGCTTCCAATATCACTTCGGTAATGATTGAATGTCCATATGAGGGTGGCTATGATCATTTGATTGGGACCTCGGAGCATGGTCATATTATCAATTCCTCCGATCTCACTATACCCACTTTCGTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrn_RNA_3

Protein Analysis

51

Amino Acids

5.81

Weight (kDa)

5.21

Isoelectric Point (pI)

65.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltrn_RNA_3	PF02598	1 - 45	2.2e-11	Putative RNA methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19300
fragaria_vesca	FvH4_4g14960 FvH4_4g14960 FvH4_4g14960
malus_domestica	MD13G1186800.v1.1 MD16G1187700.v1.1
prunus_persica	Prupe.1G154500_v2.0.a1
pyrus_communis	pycom13g16170 pycom16g15750
rosa_chinensis	RchiOBHm_Chr4g0417131
rosa_laevigata	RLG00000007929 RLG00000032566 RLG00000032567
rosa_multiflora	Rmu_ssc0000340.1_g000001 Rmu_ssc0000340.1_g000007
rosa_roxburghii	Rroxscaffold_4G00306590 Rroxscaffold_5G00348510 Rroxscaffold_5G00360910 Rroxscaffold_6G00390930 Rroxscaffold_6G00415160 Rroxscaffold_6G00415170
rosa_rugosa	Rorug02G0113500 Rorug02G0178600 Rorug04G0146100
rosa_samantha	Rh1DG080400 Rh3DG141400 Rh4AG208600 Rh4BG088300 Rh4CG219600 Rh4DG206500 Rh6CG163700 Rh6DG155500 Rh7DG306400
rosa_wichuraiana	Rw4G017680 Rw7G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	14, 152
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	56
AleI	CACNNNNGTG	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	20
ApaLI	GTGCAC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	79, 127
BspLI	GGNNCC	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	79, 127
BstKTI	GATC	2 cut(s)	82, 130
BstMBI	GATC	2 cut(s)	79, 127
BstSLI	GKGCMC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	13, 151
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	1 cut(s)	75
CviKI_1	RGCY	1 cut(s)	75
CviQI	GTAC	2 cut(s)	13, 151
DpnI	GATC	2 cut(s)	81, 129
DpnII	GATC	2 cut(s)	79, 127
Eco47I	GGWCC	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	93
FaeI	CATG	1 cut(s)	107
FaiI	YATR	7 cut(s)	27, 64, 66, 78, 105, 111, 137
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	103
FauNDI	CATATG	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	79
Hin1II	CATG	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	22, 151
Hpy188I	TCNGA	2 cut(s)	100, 127
Hpy8I	GTNNAC	2 cut(s)	22, 151
HpyCH4V	TGCA	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	79, 127
LmnI	GCTCC	1 cut(s)	100
MalI	GATC	2 cut(s)	81, 129
MboI	GATC	2 cut(s)	79, 127
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	1 cut(s)	118
MnlI	CCTC	3 cut(s)	61, 106, 133
MslI	CAYNNNNRTG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	2 cut(s)	79, 127
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	93
PspPPI	RGGWCCY	1 cut(s)	93
RsaI	GTAC	2 cut(s)	14, 152
RsaNI	GTAC	2 cut(s)	13, 151
RseI	CAYNNNNRTG	1 cut(s)	146
Sau3AI	GATC	2 cut(s)	79, 127
Sau96I	GGNCC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	1 cut(s)	98
SgeI	CNNG	2 cut(s)	109, 116
SinI	GGWCC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	118
TasI	AATT	1 cut(s)	118
TatI	WGTACW	1 cut(s)	150
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.