DNA ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G19300 |
| fragaria_vesca | FvH4_4g14960 FvH4_4g14960 FvH4_4g14960 |
| malus_domestica | MD13G1186800.v1.1 MD16G1187700.v1.1 |
| prunus_persica | Prupe.1G154500_v2.0.a1 |
| pyrus_communis | pycom13g16170 pycom16g15750 |
| rosa_chinensis | RchiOBHm_Chr4g0417131 |
| rosa_laevigata | RLG00000007929 RLG00000032566 RLG00000032567 |
| rosa_multiflora | Rmu_ssc0000340.1_g000001 Rmu_ssc0000340.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00306590 Rroxscaffold_5G00348510 Rroxscaffold_5G00360910 Rroxscaffold_6G00390930 Rroxscaffold_6G00415160 Rroxscaffold_6G00415170 |
| rosa_rugosa | Rorug02G0113500 Rorug02G0178600 Rorug04G0146100 |
| rosa_samantha | Rh1DG080400 Rh3DG141400 Rh4AG208600 Rh4BG088300 Rh4CG219600 Rh4DG206500 Rh6CG163700 Rh6DG155500 Rh7DG306400 |
| rosa_wichuraiana | Rw4G017680 Rw7G026040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 78 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AfaI | GTAC | 2 cut(s) | 162, 279 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 140, 170 |
| AgsI | TTSAA | 2 cut(s) | 65, 97 |
| AluBI | AGCT | 2 cut(s) | 93, 112 |
| AluI | AGCT | 2 cut(s) | 93, 112 |
| AlwI | GGATC | 1 cut(s) | 78 |
| AoxI | GGCC | 1 cut(s) | 172 |
| ApeKI | GCWGC | 1 cut(s) | 244 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| AsuHPI | GGTGA | 1 cut(s) | 176 |
| BauI | CACGAG | 1 cut(s) | 254 |
| BbvI | GCAGC | 1 cut(s) | 256 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 95, 129 |
| BglII | AGATCT | 1 cut(s) | 153 |
| BisI | GCNGC | 1 cut(s) | 245 |
| BlsI | GCNGC | 1 cut(s) | 246 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 140, 170 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 140, 170 |
| BseMII | CTCAG | 1 cut(s) | 228 |
| BseXI | GCAGC | 1 cut(s) | 256 |
| BseYI | CCCAGC | 1 cut(s) | 44 |
| BsgI | GTGCAG | 1 cut(s) | 263 |
| BshFI | GGCC | 1 cut(s) | 174 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 140, 170 |
| BsnI | GGCC | 1 cut(s) | 174 |
| Bsp143I | GATC | 2 cut(s) | 70, 153 |
| BspANI | GGCC | 1 cut(s) | 174 |
| BspCNI | CTCAG | 1 cut(s) | 227 |
| BspPI | GGATC | 1 cut(s) | 78 |
| BssMI | GATC | 2 cut(s) | 70, 153 |
| BssSI | CACGAG | 1 cut(s) | 254 |
| Bst2BI | CACGAG | 1 cut(s) | 254 |
| Bst4CI | ACNGT | 2 cut(s) | 188, 292 |
| Bst6I | CTCTTC | 2 cut(s) | 48, 60 |
| BstDEI | CTNAG | 2 cut(s) | 157, 214 |
| BstKTI | GATC | 2 cut(s) | 73, 156 |
| BstMBI | GATC | 2 cut(s) | 70, 153 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 294 |
| BstV1I | GCAGC | 1 cut(s) | 256 |
| BstX2I | RGATCY | 1 cut(s) | 153 |
| BstYI | RGATCY | 1 cut(s) | 153 |
| BsuRI | GGCC | 1 cut(s) | 174 |
| BtsIMutI | CAGTG | 1 cut(s) | 288 |
| Csp6I | GTAC | 2 cut(s) | 161, 278 |
| CviAII | CATG | 2 cut(s) | 86, 107 |
| CviJI | RGCY | 4 cut(s) | 93, 112, 133, 174 |
| CviKI_1 | RGCY | 4 cut(s) | 93, 112, 133, 174 |
| CviQI | GTAC | 2 cut(s) | 161, 278 |
| DdeI | CTNAG | 2 cut(s) | 157, 214 |
| DpnI | GATC | 2 cut(s) | 72, 155 |
| DpnII | GATC | 2 cut(s) | 70, 153 |
| Eam1104I | CTCTTC | 2 cut(s) | 48, 60 |
| EarI | CTCTTC | 2 cut(s) | 48, 60 |
| FaeI | CATG | 2 cut(s) | 89, 110 |
| FaiI | YATR | 5 cut(s) | 75, 87, 108, 272, 274 |
| FatI | CATG | 2 cut(s) | 85, 106 |
| Fnu4HI | GCNGC | 1 cut(s) | 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 245 |
| GluI | GCNGC | 1 cut(s) | 245 |
| GsaI | CCCAGC | 1 cut(s) | 48 |
| HaeIII | GGCC | 1 cut(s) | 174 |
| Hin1II | CATG | 2 cut(s) | 89, 110 |
| HphI | GGTGA | 1 cut(s) | 176 |
| Hpy166II | GTNNAC | 1 cut(s) | 38 |
| Hpy188I | TCNGA | 1 cut(s) | 217 |
| Hpy188III | TCNNGA | 2 cut(s) | 195, 256 |
| Hpy8I | GTNNAC | 1 cut(s) | 38 |
| HpyAV | CCTTC | 1 cut(s) | 91 |
| HpyCH4III | ACNGT | 2 cut(s) | 188, 292 |
| HpyCH4V | TGCA | 2 cut(s) | 244, 266 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 294 |
| HpyF3I | CTNAG | 2 cut(s) | 157, 214 |
| Hsp92II | CATG | 2 cut(s) | 89, 110 |
| Kzo9I | GATC | 2 cut(s) | 70, 153 |
| LpnPI | CCDG | 3 cut(s) | 30, 131, 180 |
| Lsp1109I | GCAGC | 1 cut(s) | 256 |
| MalI | GATC | 2 cut(s) | 72, 155 |
| MboI | GATC | 2 cut(s) | 70, 153 |
| MboII | GAAGA | 3 cut(s) | 65, 77, 183 |
| MflI | RGATCY | 1 cut(s) | 153 |
| MluCI | AATT | 1 cut(s) | 5 |
| MmeI | TCCRAC | 1 cut(s) | 30 |
| MnlI | CCTC | 1 cut(s) | 61 |
| MseI | TTAA | 2 cut(s) | 80, 177 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 294 |
| NdeII | GATC | 2 cut(s) | 70, 153 |
| NlaIII | CATG | 2 cut(s) | 89, 110 |
| PkrI | GCNGC | 1 cut(s) | 246 |
| PspFI | CCCAGC | 1 cut(s) | 44 |
| PsuI | RGATCY | 1 cut(s) | 153 |
| RsaI | GTAC | 2 cut(s) | 162, 279 |
| RsaNI | GTAC | 2 cut(s) | 161, 278 |
| SaqAI | TTAA | 2 cut(s) | 80, 177 |
| SatI | GCNGC | 1 cut(s) | 245 |
| Sau3AI | GATC | 2 cut(s) | 70, 153 |
| SetI | ASST | 2 cut(s) | 95, 114 |
| Sse9I | AATT | 1 cut(s) | 5 |
| TaaI | ACNGT | 2 cut(s) | 188, 292 |
| TasI | AATT | 1 cut(s) | 5 |
| Tru1I | TTAA | 2 cut(s) | 80, 177 |
| Tru9I | TTAA | 2 cut(s) | 80, 177 |
| TscAI | CASTG | 1 cut(s) | 295 |
| TseI | GCWGC | 1 cut(s) | 244 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 295 |
| XapI | RAATTY | 1 cut(s) | 5 |