Rh4CG219600

Putative RNA methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003646
Physical Location & Seq
Reverse (-)
45330819 .. 45331774
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG219600.1

Sequence Viewer

Length: 495 bp
ATGGGTAAAAAGAAGAAGAGAACCGAAGCGGAAGAAGAAATCAAAGCCGACGACATTGTTAACGGCGACTTGCATAACAAAACCAACAAGAAGAAGAAGAAGAAGAAACCCAAAACCGACACAGCCGCCGTGATTCCCACCGTCACCGTAGCCATCGCCGGTTCCATCATTCACAACGCTCAATCCCTCGAACTCGCCACTCGGCTGGCCGGTCAGATAGCGCGTGCCGTCACGATTTTCCGAGTTGATGAGGTGGTGGTATTTGACAACAACGGTGAGTCTTGCTCGCCGGAAGCTAATAATTCCGATGAGAATGAAAGCGGGGCTGCTTTTCTTATAAGAATCTTGCGGTATCTTGAGACGCCGCAGTATCTGAGGAAAGCTCTATTTCCGAAACATAAAAGCTTGAGATTTGTGGGCTTGTTGCCTCCTCTTGATGCGCCGCACCATCTGCGTAGACACGAATGGGGTGCATTTCGGGAAGGTATGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltrn_RNA_3

Protein Analysis

164

Amino Acids

18.35

Weight (kDa)

9.57

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltrn_RNA_3 PF02598 47 - 163 2.4e-48 Putative RNA methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AccI GTMKAC 1 cut(s) 457
AccII CGCG 1 cut(s) 223
AciI CCGC 6 cut(s) 29, 126, 321, 349, 365, 443
AcoI YGGCCR 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 362
AluBI AGCT 3 cut(s) 296, 383, 405
AluI AGCT 3 cut(s) 296, 383, 405
Alw26I GTCTC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 373
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 326
AspLEI GCGC 2 cut(s) 223, 442
AsuHPI GGTGA 2 cut(s) 136, 287
BbvI GCAGC 1 cut(s) 313
BccI CCATC 3 cut(s) 161, 173, 456
BceAI ACGGC 3 cut(s) 79, 113, 212
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BcoDI GTCTC 1 cut(s) 353
BisI GCNGC 4 cut(s) 126, 327, 365, 443
BlsI GCNGC 4 cut(s) 127, 328, 366, 444
BmiI GGNNCC 1 cut(s) 163
BmsI GCATC 1 cut(s) 427
BplI GAGNNNNNCTC 4 cut(s) 269, 301, 367, 399
BpuEI CTTGAG 2 cut(s) 377, 427
BsaHI GRCGYC 1 cut(s) 362
Bse118I RCCGGY 2 cut(s) 158, 209
BseMII CTCAG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 420
BseXI GCAGC 1 cut(s) 313
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 1 cut(s) 209
BsiSI CCGG 3 cut(s) 159, 210, 290
BsmAI GTCTC 1 cut(s) 353
BsmBI CGTCTC 1 cut(s) 353
BsnI GGCC 1 cut(s) 209
BspACI CCGC 6 cut(s) 29, 126, 321, 349, 365, 443
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 366
BspFNI CGCG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 163
BsrFI RCCGGY 2 cut(s) 158, 209
BssAI RCCGGY 2 cut(s) 158, 209
BssNI GRCGYC 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 142, 148, 275
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 362
BstAPI GCANNNNNTGC 1 cut(s) 451
BstC8I GCNNGC 3 cut(s) 207, 225, 287
BstDEI CTNAG 1 cut(s) 374
BstFNI CGCG 1 cut(s) 223
BstHHI GCGC 2 cut(s) 223, 442
BstMAI GTCTC 1 cut(s) 353
BstMWI GCNNNNNNNGC 1 cut(s) 451
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 313
BstXI CCANNNNNNTGG 1 cut(s) 205
BsuRI GGCC 1 cut(s) 209
BtgZI GCGATG 1 cut(s) 139
Cac8I GCNNGC 3 cut(s) 207, 225, 287
CaiI CAGNNNCTG 1 cut(s) 373
CfoI GCGC 2 cut(s) 223, 442
Cfr10I RCCGGY 2 cut(s) 158, 209
CseI GACGC 1 cut(s) 370
DdeI CTNAG 1 cut(s) 374
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Esp3I CGTCTC 1 cut(s) 353
FaiI YATR 4 cut(s) 75, 338, 399, 488
FauI CCCGC 1 cut(s) 314
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 4 cut(s) 126, 327, 365, 443
Fsp4HI GCNGC 4 cut(s) 126, 327, 365, 443
GlaI GCGC 2 cut(s) 222, 441
GluI GCNGC 4 cut(s) 126, 327, 365, 443
HaeIII GGCC 1 cut(s) 209
HapII CCGG 3 cut(s) 159, 210, 290
HgaI GACGC 1 cut(s) 370
HhaI GCGC 2 cut(s) 223, 442
Hin1I GRCGYC 1 cut(s) 362
Hin6I GCGC 2 cut(s) 221, 440
HinP1I GCGC 2 cut(s) 221, 440
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 3 cut(s) 133, 278, 342
HpaI GTTAAC 1 cut(s) 61
HpaII CCGG 3 cut(s) 159, 210, 290
HphI GGTGA 2 cut(s) 136, 287
Hpy166II GTNNAC 2 cut(s) 61, 458
Hpy188I TCNGA 5 cut(s) 216, 242, 307, 375, 393
Hpy188III TCNNGA 4 cut(s) 232, 356, 434, 479
Hpy8I GTNNAC 2 cut(s) 61, 458
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 3 cut(s) 142, 148, 275
HpyCH4V TGCA 2 cut(s) 73, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 451
HpyF3I CTNAG 1 cut(s) 374
Hsp92I GRCGYC 1 cut(s) 362
HspAI GCGC 2 cut(s) 221, 440
KspAI GTTAAC 1 cut(s) 61
LpnPI CCDG 4 cut(s) 172, 191, 223, 303
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 427
MaeIII GTNAC 2 cut(s) 142, 229
MboII GAAGA 9 cut(s) 25, 28, 44, 47, 103, 106, 109, 112, 115
MluCI AATT 1 cut(s) 301
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 5 cut(s) 197, 244, 369, 438, 441
MseI TTAA 1 cut(s) 60
MspI CCGG 3 cut(s) 159, 210, 290
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 451
NlaIV GGNNCC 1 cut(s) 163
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 2 cut(s) 142, 229
PfeI GAWTC 2 cut(s) 133, 342
PkrI GCNGC 4 cut(s) 127, 328, 366, 444
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PsiI TTATAA 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 373
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 4 cut(s) 126, 327, 365, 443
SchI GAGTC 1 cut(s) 287
SetI ASST 5 cut(s) 255, 298, 385, 407, 487
SfaNI GCATC 1 cut(s) 427
SmlI CTYRAG 2 cut(s) 356, 406
SmoI CTYRAG 2 cut(s) 356, 406
Sse9I AATT 1 cut(s) 301
SsiI CCGC 6 cut(s) 29, 126, 321, 349, 365, 443
TaaI ACNGT 3 cut(s) 142, 148, 275
TaqI TCGA 1 cut(s) 189
TasI AATT 1 cut(s) 301
TauI GCSGC 3 cut(s) 128, 367, 445
TfiI GAWTC 2 cut(s) 133, 342
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseFI GTSAC 2 cut(s) 142, 229
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 2 cut(s) 142, 229
TspDTI ATGAA 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.