Rh4AG208600

Putative RNA methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003646
Physical Location & Seq
Reverse (-)
49978017 .. 49982070
4054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG208600.1

Sequence Viewer

Length: 1023 bp
ATGGGTAGAAAGAAGAAGAGAACCGAAGCGGAAGAAGAAATCAAAGCCGACGACATTGTTAACGGCGACTTGCATAACAAAACCAACAAGAAGAAGAAGAAGAATAAACCCAAAACCGACACAGCCGCCGTGATTCCCACCGTCACCGTAGCCATCGCCGGTTCCATCATTCACAACGCTCAATCCCTCGAACTCGCCACTCGGCTGGCCGGTCAGATAGCTCGTGCCGTCACGATTTTCCGAGTTGATGAGGTGGTGGTATTTGACAACAACGGTGAGTCTGGCTCGCCGGAAGCTAATAATTCCGATGAGAATGAAAGCGGGGCTGCTTTTCTTATAAGAATCTTGCGGTATCTTGAGACGCCGCAGTATCTGAGGAAAGCTCTATTTCCGAAACATAATAGCTTGAGATTTGTGGGCTTGTTGCCTCCTCTTGATGCGCCGCACCATCTGCGTAGACACGAATGGGGTGCATTTCGGGAAGGTGTCACGCTAAAGGAAAGATCTCCGGATGGTGTTGGGACATTAGTTGATGTGGGCTTGAGTAAGAATGTTGTCGTTGACCACGTACTTGATCCTGGAACAAGAGTTACTGTGGCTATGGGAGACAGCTGGAATTTGGATGCTGATATATCACGGCAGGTTGTATCATCATCCAAGCCAAGGGAAGAAGCAGGGATGTATTGGGGGTACAAAGTGCGGTATGCTTCCAATATCACTTCGGTAATGACTGAATGTCCGTACGAGGGTGGTTATGATCATTTGATTGGAACCTCAGAGCATGGTCAGATTATAAATTCCTCTGATCTCAATATACCTACTTTCAGGCATCTATTGATTGCTTTCGGTGGACTTGCTGGATTGGAAGAGAGCATTGAAGAGGATCATAACTTAAAGGCAAAGAATGTGCGGGAGGTGTTTAATATATATTTAAACACATGTCCGCATCAGGGGAGTCGAACAATACGAACAGAGGTACTTTCAGTATATTATAATCCTTGGCATTTTCATTTAGGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltrn_RNA_3

Protein Analysis

340

Amino Acids

37.86

Weight (kDa)

6.54

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltrn_RNA_3 PF02598 47 - 325 7e-105 Putative RNA methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 338, 794, 993
Acc36I ACCTGC 1 cut(s) 631
AccI GTMKAC 1 cut(s) 457
AccIII TCCGGA 1 cut(s) 508
AciI CCGC 9 cut(s) 29, 126, 321, 349, 365, 443, 700, 910, 944
AclWI GGATC 2 cut(s) 569, 891
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 2 cut(s) 616, 796
AcyI GRCGYC 1 cut(s) 362
AfaI GTAC 4 cut(s) 570, 692, 743, 978
AfiI CCNNNNNNNGG 3 cut(s) 663, 746, 950
AflIII ACRYGT 1 cut(s) 938
AgsI TTSAA 1 cut(s) 878
AhdI GACNNNNNGTC 1 cut(s) 735
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 5 cut(s) 221, 296, 383, 405, 612
AluI AGCT 5 cut(s) 221, 296, 383, 405, 612
Alw26I GTCTC 2 cut(s) 353, 600
AlwI GGATC 2 cut(s) 569, 891
AlwNI CAGNNNCTG 1 cut(s) 373
Aor13HI TCCGGA 1 cut(s) 508
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 2 cut(s) 616, 796
AspLEI GCGC 1 cut(s) 442
AsuHPI GGTGA 2 cut(s) 136, 287
BauI CACGAG 1 cut(s) 222
BbvI GCAGC 1 cut(s) 313
BccI CCATC 4 cut(s) 161, 173, 456, 506
BceAI ACGGC 4 cut(s) 79, 113, 212, 653
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BciT130I CCWGG 1 cut(s) 579
BclI TGATCA 1 cut(s) 757
BcoDI GTCTC 2 cut(s) 353, 600
BfuAI ACCTGC 1 cut(s) 631
BglII AGATCT 1 cut(s) 503
BisI GCNGC 4 cut(s) 126, 327, 365, 443
BlsI GCNGC 4 cut(s) 127, 328, 366, 444
Bme1390I CCNGG 1 cut(s) 579
BmeRI GACNNNNNGTC 1 cut(s) 735
BmiI GGNNCC 2 cut(s) 163, 772
BmrFI CCNGG 1 cut(s) 579
BmsI GCATC 4 cut(s) 427, 613, 838, 955
BplI GAGNNNNNCTC 4 cut(s) 269, 301, 367, 399
BpuEI CTTGAG 3 cut(s) 377, 427, 562
BsaAI YACGTR 1 cut(s) 568
BsaHI GRCGYC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 662, 998
BsaWI WCCGGW 1 cut(s) 508
Bsc4I CCNNNNNNNGG 3 cut(s) 663, 746, 950
Bse118I RCCGGY 2 cut(s) 158, 209
BseAI TCCGGA 1 cut(s) 508
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 2 cut(s) 662, 998
BseGI GGATG 4 cut(s) 517, 628, 653, 684
BseLI CCNNNNNNNGG 3 cut(s) 663, 746, 950
BseMII CTCAG 2 cut(s) 365, 789
BseRI GAGGAG 1 cut(s) 420
BseXI GCAGC 1 cut(s) 313
BshFI GGCC 1 cut(s) 209
BsiSI CCGG 4 cut(s) 159, 210, 290, 509
BsiWI CGTACG 1 cut(s) 741
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 3 cut(s) 663, 746, 950
BsmAI GTCTC 2 cut(s) 353, 600
BsmBI CGTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 535
BsnI GGCC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 508
Bsp143I GATC 5 cut(s) 503, 574, 757, 805, 883
BspACI CCGC 9 cut(s) 29, 126, 321, 349, 365, 443, 700, 910, 944
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 2 cut(s) 366, 788
BspEI TCCGGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 163, 772
BspMI ACCTGC 1 cut(s) 631
BspPI GGATC 2 cut(s) 569, 891
BsrFI RCCGGY 2 cut(s) 158, 209
BssAI RCCGGY 2 cut(s) 158, 209
BssECI CCNNGG 2 cut(s) 662, 998
BssMI GATC 5 cut(s) 503, 574, 757, 805, 883
BssNI GRCGYC 1 cut(s) 362
BssSI CACGAG 1 cut(s) 222
BssT1I CCWWGG 2 cut(s) 662, 998
Bst2BI CACGAG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 4 cut(s) 142, 148, 275, 595
Bst6I CTCTTC 3 cut(s) 11, 861, 873
BstACI GRCGYC 1 cut(s) 362
BstAPI GCANNNNNTGC 1 cut(s) 451
BstBAI YACGTR 1 cut(s) 568
BstC8I GCNNGC 2 cut(s) 207, 287
BstDEI CTNAG 2 cut(s) 374, 775
BstF5I GGATG 4 cut(s) 517, 628, 653, 684
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 5 cut(s) 506, 577, 760, 808, 886
BstMAI GTCTC 2 cut(s) 353, 600
BstMBI GATC 5 cut(s) 503, 574, 757, 805, 883
BstMWI GCNNNNNNNGC 1 cut(s) 451
BstNI CCWGG 1 cut(s) 579
BstNSI RCATGY 1 cut(s) 942
BstSCI CCNGG 1 cut(s) 577
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 503
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 1 cut(s) 503
BsuRI GGCC 1 cut(s) 209
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 4 cut(s) 517, 628, 653, 684
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 2 cut(s) 207, 287
CaiI CAGNNNCTG 1 cut(s) 373
CfoI GCGC 1 cut(s) 442
Cfr10I RCCGGY 2 cut(s) 158, 209
CseI GACGC 1 cut(s) 370
Csp6I GTAC 4 cut(s) 569, 691, 742, 977
CviAII CATG 2 cut(s) 782, 939
CviQI GTAC 4 cut(s) 569, 691, 742, 977
DdeI CTNAG 2 cut(s) 374, 775
DpnI GATC 5 cut(s) 505, 576, 759, 807, 885
DpnII GATC 5 cut(s) 503, 574, 757, 805, 883
DraI TTTAAA 1 cut(s) 933
DriI GACNNNNNGTC 1 cut(s) 735
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 3 cut(s) 11, 861, 873
Eam1105I GACNNNNNGTC 1 cut(s) 735
EarI CTCTTC 3 cut(s) 11, 861, 873
Eco130I CCWWGG 2 cut(s) 662, 998
EcoRII CCWGG 1 cut(s) 577
EcoT14I CCWWGG 2 cut(s) 662, 998
ErhI CCWWGG 2 cut(s) 662, 998
Esp3I CGTCTC 1 cut(s) 353
FaeI CATG 2 cut(s) 785, 942
FaqI GGGAC 1 cut(s) 535
FatI CATG 2 cut(s) 781, 938
FauI CCCGC 2 cut(s) 314, 903
FbaI TGATCA 1 cut(s) 757
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 4 cut(s) 126, 327, 365, 443
FokI GGATG 4 cut(s) 524, 635, 640, 691
Fsp4HI GCNGC 4 cut(s) 126, 327, 365, 443
GlaI GCGC 1 cut(s) 441
GluI GCNGC 4 cut(s) 126, 327, 365, 443
HaeIII GGCC 1 cut(s) 209
HapII CCGG 4 cut(s) 159, 210, 290, 509
HgaI GACGC 1 cut(s) 370
HhaI GCGC 1 cut(s) 442
Hin1I GRCGYC 1 cut(s) 362
Hin1II CATG 2 cut(s) 785, 942
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HincII GTYRAC 2 cut(s) 61, 562
HindII GTYRAC 2 cut(s) 61, 562
HinfI GANTC 4 cut(s) 133, 278, 342, 955
HpaI GTTAAC 1 cut(s) 61
HpaII CCGG 4 cut(s) 159, 210, 290, 509
HphI GGTGA 2 cut(s) 136, 287
Hpy166II GTNNAC 4 cut(s) 61, 458, 562, 851
Hpy188I TCNGA 8 cut(s) 216, 242, 307, 375, 393, 778, 789, 805
Hpy188III TCNNGA 5 cut(s) 232, 356, 434, 479, 509
Hpy8I GTNNAC 4 cut(s) 61, 458, 562, 851
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 4 cut(s) 142, 148, 275, 595
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 2 cut(s) 73, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 451
HpyF3I CTNAG 2 cut(s) 374, 775
HpySE526I ACGT 1 cut(s) 567
Hsp92I GRCGYC 1 cut(s) 362
Hsp92II CATG 2 cut(s) 785, 942
HspAI GCGC 1 cut(s) 440
Kpn2I TCCGGA 1 cut(s) 508
Ksp22I TGATCA 1 cut(s) 757
KspAI GTTAAC 1 cut(s) 61
Kzo9I GATC 5 cut(s) 503, 574, 757, 805, 883
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 4 cut(s) 427, 613, 838, 955
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 4 cut(s) 142, 229, 487, 589
MalI GATC 5 cut(s) 505, 576, 759, 807, 885
MboI GATC 5 cut(s) 503, 574, 757, 805, 883
MflI RGATCY 1 cut(s) 503
MluCI AATT 3 cut(s) 301, 616, 796
MlyI GAGTC 2 cut(s) 287, 964
MroI TCCGGA 1 cut(s) 508
MseI TTAA 4 cut(s) 60, 893, 921, 932
MspA1I CMGCKG 1 cut(s) 612
MspI CCGG 4 cut(s) 159, 210, 290, 509
MspR9I CCNGG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 579
MwoI GCNNNNNNNGC 1 cut(s) 451
NdeII GATC 5 cut(s) 503, 574, 757, 805, 883
NlaIII CATG 2 cut(s) 785, 942
NlaIV GGNNCC 2 cut(s) 163, 772
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 3 cut(s) 142, 229, 487
NspI RCATGY 1 cut(s) 942
PciI ACATGT 1 cut(s) 938
PcsI WCGNNNNNNNCGW 2 cut(s) 564, 964
PfeI GAWTC 2 cut(s) 133, 342
Pfl23II CGTACG 1 cut(s) 741
PfoI TCCNGGA 1 cut(s) 577
PkrI GCNGC 4 cut(s) 127, 328, 366, 444
PleI GAGTC 2 cut(s) 286, 963
PpsI GAGTC 2 cut(s) 286, 963
Ppu21I YACGTR 1 cut(s) 568
PscI ACATGT 1 cut(s) 938
PsiI TTATAA 3 cut(s) 338, 794, 993
Psp6I CCWGG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 577
PspLI CGTACG 1 cut(s) 741
PspN4I GGNNCC 2 cut(s) 163, 772
PsrI GAACNNNNNNTAC 2 cut(s) 574, 606
PstNI CAGNNNCTG 1 cut(s) 373
PsuI RGATCY 1 cut(s) 503
PvuII CAGCTG 1 cut(s) 612
RsaI GTAC 4 cut(s) 570, 692, 743, 978
RsaNI GTAC 4 cut(s) 569, 691, 742, 977
SaqAI TTAA 4 cut(s) 60, 893, 921, 932
SatI GCNGC 4 cut(s) 126, 327, 365, 443
Sau3AI GATC 5 cut(s) 503, 574, 757, 805, 883
SchI GAGTC 2 cut(s) 287, 964
ScrFI CCNGG 1 cut(s) 579
SfaNI GCATC 4 cut(s) 427, 613, 838, 955
SmlI CTYRAG 3 cut(s) 356, 406, 541
SmoI CTYRAG 3 cut(s) 356, 406, 541
Sse9I AATT 3 cut(s) 301, 616, 796
SsiI CCGC 9 cut(s) 29, 126, 321, 349, 365, 443, 700, 910, 944
StyD4I CCNGG 1 cut(s) 577
StyI CCWWGG 2 cut(s) 662, 998
TaaI ACNGT 4 cut(s) 142, 148, 275, 595
TaiI ACGT 1 cut(s) 570
TaqI TCGA 2 cut(s) 189, 958
TasI AATT 3 cut(s) 301, 616, 796
TauI GCSGC 3 cut(s) 128, 367, 445
TfiI GAWTC 2 cut(s) 133, 342
Tru1I TTAA 4 cut(s) 60, 893, 921, 932
Tru9I TTAA 4 cut(s) 60, 893, 921, 932
TseFI GTSAC 3 cut(s) 142, 229, 487
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 3 cut(s) 142, 229, 487
TspDTI ATGAA 2 cut(s) 330, 998
TspGWI ACGGA 1 cut(s) 729
XapI RAATTY 2 cut(s) 616, 796
XceI RCATGY 1 cut(s) 942
XmiI GTMKAC 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.