Rh1DG080400

Putative RNA methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003646
Physical Location & Seq
Forward (+)
14688418 .. 14697762
9345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG080400.1

Sequence Viewer

Length: 387 bp
ATGAAAGTGTCACCGGGAGGTGCTGGCAGTGAGATGAGTGTCACACTAAAGGAAAGATCTCCAGACGGTGTTGGGACGTTAGTTGATGTGGGTTTGAGTAAGAATGTTGTCGTTGATCAAGTACTTGATCTTGGAGCAAGAGTTACAGTGGCTATGGGAGACAGCTGGAATTTGGAAGCTGATATATCATGGCAGGTTGTATCATCATCCAAGCCAAGGGAAGAAGCAGGGATGTATTGGGTTACAAAGTGCACTATGCTTCCAATATCACTTCGGCATCTATTGATTGCGTTCGGTGGACTTGCTGGGTTGGAAGACAGCATTGAAGAGGATCATAACTTAAAGGCAAAGAATGTGCGGGAGCTGATGGTCATCAACCGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltrn_RNA_3

Protein Analysis

128

Amino Acids

13.86

Weight (kDa)

5.3

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltrn_RNA_3 PF02598 14 - 80 2.3e-09 Putative RNA methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AciI CCGC 2 cut(s) 358, 379
AclWI GGATC 1 cut(s) 339
AcsI RAATTY 1 cut(s) 169
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 1 cut(s) 326
AluBI AGCT 3 cut(s) 165, 179, 364
AluI AGCT 3 cut(s) 165, 179, 364
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 153
Alw44I GTGCAC 1 cut(s) 250
AlwI GGATC 1 cut(s) 339
ApaLI GTGCAC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 169
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 3
BaeGI GKGCMC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 254
BccI CCATC 1 cut(s) 361
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 184
BglII AGATCT 1 cut(s) 56
BmcAI AGTACT 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 15
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 15
BsaBI GATNNNNATC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 206, 237
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 254
BseYI CCCAGC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 254
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 4 cut(s) 56, 115, 127, 331
BspACI CCGC 2 cut(s) 358, 379
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 4 cut(s) 56, 115, 127, 331
BssT1I CCWWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 68, 148
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 25
BstF5I GGATG 2 cut(s) 206, 237
BstKTI GATC 4 cut(s) 59, 118, 130, 334
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 4 cut(s) 56, 115, 127, 331
BstSCI CCNGG 1 cut(s) 13
BstSLI GKGCMC 1 cut(s) 254
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BtsCI GGATG 2 cut(s) 206, 237
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 34, 153
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 122
CviAII CATG 1 cut(s) 189
CviJI RGCY 5 cut(s) 152, 165, 179, 214, 364
CviKI_1 RGCY 5 cut(s) 152, 165, 179, 214, 364
CviQI GTAC 1 cut(s) 122
DpnI GATC 4 cut(s) 58, 117, 129, 333
DpnII GATC 4 cut(s) 56, 115, 127, 331
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 1 cut(s) 192
FaiI YATR 5 cut(s) 155, 185, 190, 257, 336
FaqI GGGAC 1 cut(s) 88
FatI CATG 1 cut(s) 188
FauI CCCGC 1 cut(s) 351
FbaI TGATCA 1 cut(s) 115
FokI GGATG 2 cut(s) 193, 244
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 45
HapII CCGG 1 cut(s) 14
Hin1II CATG 1 cut(s) 192
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 2 cut(s) 252, 299
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 2 cut(s) 252, 299
HpyCH4III ACNGT 2 cut(s) 68, 148
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 1 cut(s) 192
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 4 cut(s) 56, 115, 127, 331
LmnI GCTCC 2 cut(s) 134, 361
LpnPI CCDG 7 cut(s) 9, 27, 75, 151, 179, 213, 291
LweI GCATC 1 cut(s) 286
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 4 cut(s) 9, 40, 142, 241
MalI GATC 4 cut(s) 58, 117, 129, 333
MboI GATC 4 cut(s) 56, 115, 127, 331
MboII GAAGA 3 cut(s) 233, 326, 338
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 2 cut(s) 11, 322
MseI TTAA 2 cut(s) 341, 385
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 15
NciI CCSGG 1 cut(s) 15
NdeII GATC 4 cut(s) 56, 115, 127, 331
NlaIII CATG 1 cut(s) 192
NmuCI GTSAC 2 cut(s) 9, 40
PspFI CCCAGC 1 cut(s) 305
PsuI RGATCY 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 165
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 341, 385
Sau3AI GATC 4 cut(s) 56, 115, 127, 331
ScaI AGTACT 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 1 cut(s) 254
SetI ASST 6 cut(s) 22, 80, 167, 181, 198, 366
SfaNI GCATC 1 cut(s) 286
Sse9I AATT 1 cut(s) 169
SsiI CCGC 2 cut(s) 358, 379
StyD4I CCNGG 1 cut(s) 13
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 2 cut(s) 68, 148
TaiI ACGT 1 cut(s) 80
TasI AATT 1 cut(s) 169
TatI WGTACW 1 cut(s) 121
Tru1I TTAA 2 cut(s) 341, 385
Tru9I TTAA 2 cut(s) 341, 385
TscAI CASTG 2 cut(s) 34, 153
TseFI GTSAC 2 cut(s) 9, 40
Tsp45I GTSAC 2 cut(s) 9, 40
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 34, 153
VneI GTGCAC 1 cut(s) 250
XapI RAATTY 1 cut(s) 169
ZrmI AGTACT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.