Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003646

Physical Location & Seq

Genomic Coordinates Forward (+)

11912715 .. 11916179

Gene Structure 3465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16170.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGGGAAGAAGAAGAAGAGAGCCGAATCAGAAGCAGAAGCACAACCAGAACAGAACAAAGTCGACGCTGTGAATGGCGACCCTCATCAGAAAGATAAGAAGAAGAAGAAGCACAAATTCGACCGACCCGCCGTGATACCTTCCGTGAGCGTAGCCGTCCCCGGTTCAATCATCGACAACACTCAATCCCTCGAACTCGCCACCCGATTGGCCAGTCAGATTGCTCGTGCAGCGACGATTTTCCGAATCGACGAGGTGGTGATATTTGACAATAAGAGTGAGTCTGGCTCATTGCCACAAGCTGATTCAGATGAGAATGAAAGCGGTGCTGCTTTTCTTGTACGAATCTTGAGGTACCTTGAGACACCTCAGTATTTGAGAAAAGCTCTATTTCCAAAACACAACAGCCTAAGATTTGTGGGCATGTTACCCCCGCTTGATGCTCCGCACCATCTGCGCAAACATGAATGGGGTCTGTTTCGGGAAGGTGTCACATTGAAAGAAAGACCTCCCAACCTTGTGGGAACACTAGTTGATGTGGGCTTGAGTAAGAATGTCATTGTTGATCAAGTACTTGATCCTGGAACAAGAGTTACTGTGGCTATGGGAGCCAGTTGGAACTTGGATGCTGGTAATGAATCTGTCCTGAATTTGTTTTCTGGCCTTTTCTGTTTTCTTTCTCAACCATTAATGGAGGCTTTACTATTGACTATGAATCTTATGTGGGTATTGGCTTCTTTCTATTGCATTGATCTAGATATATCACGCCAGGTTGTCTCATCCTCCAAGCCTAGGGAAGAAGCAGGAACATATTGGGGGTACAAAGTGCGCTATGCTTCTAATATTACTTCAGTCATGAATGAATGCCCATACAAGGGTGGCTATGACCATTCAATTGGTACCTCAGAGCACGGTCAGATTATTAATTCCTCTGAGCTCACTGTACCTACTTTCAGGCATCTATTGATTGCTTTCGGTGGACTTGCTGGGTTGGAAGAGAGCGTTGAAGAGGATGCTAACTTAAAGCCGAGCATTGAAGAGAATTTAGCATCAAAGTTCACTAATTGGAGGACATTAGGAACTTCCACAGTTGCCAAGATCACTGGGAATCCGAAATCAAGTCATGATTCTTCCGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltrn_RNA_3

Protein Analysis

381

Amino Acids

41.89

Weight (kDa)

6.39

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19300
fragaria_vesca	FvH4_4g14960 FvH4_4g14960 FvH4_4g14960
malus_domestica	MD13G1186800.v1.1 MD16G1187700.v1.1
prunus_persica	Prupe.1G154500_v2.0.a1
pyrus_communis	pycom13g16170 pycom16g15750
rosa_chinensis	RchiOBHm_Chr4g0417131
rosa_laevigata	RLG00000007929 RLG00000032566 RLG00000032567
rosa_multiflora	Rmu_ssc0000340.1_g000001 Rmu_ssc0000340.1_g000007
rosa_roxburghii	Rroxscaffold_4G00306590 Rroxscaffold_5G00348510 Rroxscaffold_5G00360910 Rroxscaffold_6G00390930 Rroxscaffold_6G00415160 Rroxscaffold_6G00415170
rosa_rugosa	Rorug02G0113500 Rorug02G0178600 Rorug04G0146100
rosa_samantha	Rh1DG080400 Rh3DG141400 Rh4AG208600 Rh4BG088300 Rh4CG219600 Rh4DG206500 Rh6CG163700 Rh6DG155500 Rh7DG306400
rosa_wichuraiana	Rw4G017680 Rw7G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	458
Acc65I	GGTACC	2 cut(s)	354, 899
AccB1I	GGYRCC	2 cut(s)	354, 899
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	4 cut(s)	129, 324, 434, 446
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	3 cut(s)	116, 649, 1042
AcuI	CTGAAG	1 cut(s)	834
AfaI	GTAC	6 cut(s)	342, 356, 573, 821, 901, 945
AfiI	CCNNNNNNNGG	3 cut(s)	792, 874, 875
AgsI	TTSAA	5 cut(s)	168, 499, 894, 1007, 1037
AhlI	ACTAGT	1 cut(s)	529
AjnI	CCWGG	2 cut(s)	580, 768
AluBI	AGCT	3 cut(s)	302, 386, 937
AluI	AGCT	3 cut(s)	302, 386, 937
Alw21I	GWGCWC	2 cut(s)	912, 939
Alw26I	GTCTC	2 cut(s)	356, 781
AlwI	GGATC	1 cut(s)	572
AoxI	GGCC	2 cut(s)	210, 661
ApeKI	GCWGC	2 cut(s)	230, 329
ApoI	RAATTY	3 cut(s)	116, 649, 1042
AseI	ATTAAT	2 cut(s)	689, 924
Asp718I	GGTACC	2 cut(s)	354, 899
AspA2I	CCTAGG	1 cut(s)	791
AspLEI	GCGC	2 cut(s)	459, 831
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	271
AvrII	CCTAGG	1 cut(s)	791
BalI	TGGCCA	1 cut(s)	212
BanI	GGYRCC	2 cut(s)	354, 899
BanII	GRGCYC	1 cut(s)	939
BauI	CACGAG	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	912, 939
BbvI	GCAGC	2 cut(s)	242, 316
BccI	CCATC	1 cut(s)	459
BceAI	ACGGC	2 cut(s)	116, 140
BciT130I	CCWGG	2 cut(s)	582, 770
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	356, 781
BcuI	ACTAGT	1 cut(s)	529
BfaI	CTAG	3 cut(s)	530, 755, 792
BisI	GCNGC	2 cut(s)	231, 330
BlnI	CCTAGG	1 cut(s)	791
BlsI	GCNGC	2 cut(s)	232, 331
BmcAI	AGTACT	1 cut(s)	573
Bme1390I	CCNGG	3 cut(s)	162, 582, 770
BmiI	GGNNCC	3 cut(s)	356, 610, 901
BmrFI	CCNGG	3 cut(s)	162, 582, 770
BmrI	ACTGGG	1 cut(s)	1113
BmsI	GCATC	5 cut(s)	430, 616, 967, 1003, 1058
BmuI	ACTGGG	1 cut(s)	1113
BplI	GAGNNNNNCTC	4 cut(s)	272, 304, 370, 402
BpuEI	CTTGAG	3 cut(s)	370, 380, 565
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	160, 791
Bsc4I	CCNNNNNNNGG	3 cut(s)	792, 874, 875
Bse1I	ACTGG	3 cut(s)	213, 612, 1108
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	2 cut(s)	582, 770
BseDI	CCNNGG	2 cut(s)	160, 791
BseGI	GGATG	3 cut(s)	631, 779, 1018
BseLI	CCNNNNNNNGG	3 cut(s)	792, 874, 875
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	3 cut(s)	383, 918, 924
BseNI	ACTGG	3 cut(s)	213, 612, 1108
BseXI	GCAGC	2 cut(s)	242, 316
BseYI	CCCAGC	1 cut(s)	986
BsgI	GTGCAG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	212, 663
BshNI	GGYRCC	2 cut(s)	354, 899
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	2 cut(s)	912, 939
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	792, 874, 875
BsmAI	GTCTC	2 cut(s)	356, 781
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	869
BsnI	GGCC	2 cut(s)	212, 663
Bsp1286I	GDGCHC	2 cut(s)	912, 939
Bsp143I	GATC	4 cut(s)	565, 577, 751, 1098
BspACI	CCGC	4 cut(s)	129, 324, 434, 446
BspANI	GGCC	2 cut(s)	212, 663
BspCNI	CTCAG	3 cut(s)	382, 917, 925
BspHI	TCATGA	2 cut(s)	855, 1123
BspLI	GGNNCC	3 cut(s)	356, 610, 901
BspPI	GGATC	1 cut(s)	572
BspT107I	GGYRCC	2 cut(s)	354, 899
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	3 cut(s)	213, 612, 1108
BssECI	CCNNGG	2 cut(s)	160, 791
BssMI	GATC	4 cut(s)	565, 577, 751, 1098
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	791
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	582, 770
Bst4CI	ACNGT	4 cut(s)	598, 914, 943, 1090
Bst6I	CTCTTC	4 cut(s)	11, 990, 1002, 1032
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstDEI	CTNAG	4 cut(s)	369, 410, 904, 933
BstF5I	GGATG	3 cut(s)	631, 779, 1018
BstHHI	GCGC	2 cut(s)	459, 831
BstKTI	GATC	4 cut(s)	568, 580, 754, 1101
BstMAI	GTCTC	2 cut(s)	356, 781
BstMBI	GATC	4 cut(s)	565, 577, 751, 1098
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 454, 608
BstNI	CCWGG	2 cut(s)	582, 770
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	160, 580, 768
BstV1I	GCAGC	2 cut(s)	242, 316
BstXI	CCANNNNNNTGG	3 cut(s)	208, 520, 896
BsuRI	GGCC	2 cut(s)	212, 663
BtsCI	GGATG	3 cut(s)	631, 779, 1018
BtsIMutI	CAGTG	2 cut(s)	939, 1101
CciI	TCATGA	2 cut(s)	855, 1123
CfoI	GCGC	2 cut(s)	459, 831
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	6 cut(s)	341, 355, 572, 820, 900, 944
CviAII	CATG	4 cut(s)	424, 464, 856, 1124
CviQI	GTAC	6 cut(s)	341, 355, 572, 820, 900, 944
DdeI	CTNAG	4 cut(s)	369, 410, 904, 933
DpnI	GATC	4 cut(s)	567, 579, 753, 1100
DpnII	GATC	4 cut(s)	565, 577, 751, 1098
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	4 cut(s)	11, 990, 1002, 1032
EarI	CTCTTC	4 cut(s)	11, 990, 1002, 1032
Ecl136II	GAGCTC	1 cut(s)	937
Eco130I	CCWWGG	1 cut(s)	791
Eco24I	GRGCYC	1 cut(s)	939
Eco53kI	GAGCTC	1 cut(s)	937
Eco57I	CTGAAG	1 cut(s)	834
EcoICRI	GAGCTC	1 cut(s)	937
EcoRII	CCWGG	2 cut(s)	580, 768
EcoT14I	CCWWGG	1 cut(s)	791
EcoT38I	GRGCYC	1 cut(s)	939
ErhI	CCWWGG	1 cut(s)	791
FaeI	CATG	4 cut(s)	427, 467, 859, 1127
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	4 cut(s)	423, 463, 855, 1123
FauI	CCCGC	2 cut(s)	136, 441
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	231, 330
FokI	GGATG	3 cut(s)	638, 766, 1025
FriOI	GRGCYC	1 cut(s)	939
Fsp4HI	GCNGC	2 cut(s)	231, 330
FspBI	CTAG	3 cut(s)	530, 755, 792
FspI	TGCGCA	1 cut(s)	458
GlaI	GCGC	2 cut(s)	458, 830
GluI	GCNGC	2 cut(s)	231, 330
GsaI	CCCAGC	1 cut(s)	990
HaeIII	GGCC	2 cut(s)	212, 663
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	2 cut(s)	459, 831
Hin1II	CATG	4 cut(s)	427, 467, 859, 1127
Hin6I	GCGC	2 cut(s)	457, 829
HinP1I	GCGC	2 cut(s)	457, 829
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	3 cut(s)	64, 980, 1059
Hpy188III	TCNNGA	6 cut(s)	349, 482, 646, 755, 856, 1124
Hpy8I	GTNNAC	3 cut(s)	64, 980, 1059
Hpy99I	CGWCG	3 cut(s)	68, 238, 254
HpyAV	CCTTC	2 cut(s)	150, 479
HpyCH4III	ACNGT	4 cut(s)	598, 914, 943, 1090
HpyCH4V	TGCA	2 cut(s)	230, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 454, 608
HpyF3I	CTNAG	4 cut(s)	369, 410, 904, 933
Hsp92II	CATG	4 cut(s)	427, 467, 859, 1127
HspAI	GCGC	2 cut(s)	457, 829
KpnI	GGTACC	2 cut(s)	358, 903
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	565, 577, 751, 1098
LmnI	GCTCC	2 cut(s)	448, 608
Lsp1109I	GCAGC	2 cut(s)	242, 316
LweI	GCATC	5 cut(s)	430, 616, 967, 1003, 1058
MaeI	CTAG	3 cut(s)	530, 755, 792
MaeIII	GTNAC	3 cut(s)	426, 490, 592
MalI	GATC	4 cut(s)	567, 579, 753, 1100
MboI	GATC	4 cut(s)	565, 577, 751, 1098
MfeI	CAATTG	1 cut(s)	894
MhlI	GDGCHC	2 cut(s)	912, 939
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	6 cut(s)	116, 649, 894, 925, 1042, 1063
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	2 cut(s)	596, 972
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	3 cut(s)	689, 924, 1022
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	3 cut(s)	162, 582, 770
MunI	CAATTG	1 cut(s)	894
Mva1269I	GAATGC	1 cut(s)	869
MvaI	CCWGG	2 cut(s)	582, 770
MwoI	GCNNNNNNNGC	3 cut(s)	230, 454, 608
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	565, 577, 751, 1098
NlaIII	CATG	4 cut(s)	427, 467, 859, 1127
NlaIV	GGNNCC	3 cut(s)	356, 610, 901
NmeAIII	GCCGAG	1 cut(s)	1053
NmuCI	GTSAC	1 cut(s)	490
NsbI	TGCGCA	1 cut(s)	458
NspI	RCATGY	1 cut(s)	427
PagI	TCATGA	2 cut(s)	855, 1123
PctI	GAATGC	1 cut(s)	869
PfeI	GAWTC	9 cut(s)	26, 246, 305, 345, 638, 715, 1108, 1127, 1136
PfoI	TCCNGGA	1 cut(s)	580
PkrI	GCNGC	2 cut(s)	232, 331
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PshBI	ATTAAT	2 cut(s)	689, 924
Psp124BI	GAGCTC	1 cut(s)	939
Psp6I	CCWGG	2 cut(s)	580, 768
PspFI	CCCAGC	1 cut(s)	986
PspGI	CCWGG	2 cut(s)	580, 768
PspN4I	GGNNCC	3 cut(s)	356, 610, 901
PsrI	GAACNNNNNNTAC	2 cut(s)	577, 609
RsaI	GTAC	6 cut(s)	342, 356, 573, 821, 901, 945
RsaNI	GTAC	6 cut(s)	341, 355, 572, 820, 900, 944
SacI	GAGCTC	1 cut(s)	939
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	689, 924, 1022
SatI	GCNGC	2 cut(s)	231, 330
Sau3AI	GATC	4 cut(s)	565, 577, 751, 1098
ScaI	AGTACT	1 cut(s)	573
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	3 cut(s)	162, 582, 770
SduI	GDGCHC	2 cut(s)	912, 939
SfaNI	GCATC	5 cut(s)	430, 616, 967, 1003, 1058
SmlI	CTYRAG	3 cut(s)	349, 359, 544
SmoI	CTYRAG	3 cut(s)	349, 359, 544
SpeI	ACTAGT	1 cut(s)	529
Sse9I	AATT	6 cut(s)	116, 649, 894, 925, 1042, 1063
SsiI	CCGC	4 cut(s)	129, 324, 434, 446
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	3 cut(s)	530, 755, 792
SstI	GAGCTC	1 cut(s)	939
StyD4I	CCNGG	3 cut(s)	160, 580, 768
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	4 cut(s)	598, 914, 943, 1090
TaqI	TCGA	5 cut(s)	63, 120, 174, 192, 249
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	6 cut(s)	116, 649, 894, 925, 1042, 1063
TatI	WGTACW	1 cut(s)	571
TfiI	GAWTC	9 cut(s)	26, 246, 305, 345, 638, 715, 1108, 1127, 1136
Tru1I	TTAA	3 cut(s)	689, 924, 1022
Tru9I	TTAA	3 cut(s)	689, 924, 1022
TscAI	CASTG	2 cut(s)	946, 1108
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	230, 329
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	7 cut(s)	333, 480, 651, 728, 872, 876, 1128
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	946, 1108
VspI	ATTAAT	2 cut(s)	689, 924
XapI	RAATTY	3 cut(s)	116, 649, 1042
XbaI	TCTAGA	1 cut(s)	754
XceI	RCATGY	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XmaJI	CCTAGG	1 cut(s)	791
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	3 cut(s)	530, 755, 792
ZrmI	AGTACT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.