RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380 |
| malus_domestica | MD02G1056600.v1.1 MD15G1011400.v1.1 MD15G1191200.v1.1 |
| prunus_persica | Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.7G226000_v2.0.a1 Prupe.7G226000_v2.0.a1 |
| pyrus_communis | pycom02g04580 pycom02g04590 pycom15g17120 |
| rosa_chinensis | RchiOBHm_Chr2g0091211 RchiOBHm_Chr6g0302931 RchiOBHm_Chr6g0302941 |
| rosa_laevigata | RLG00000011123 RLG00000016192 |
| rosa_multiflora | Rmu_sc0002270.1_g000015 Rmu_sc0033272.1_g000001 Rmu_ssc0000460.1_g000018 |
| rosa_roxburghii | Rroxscaffold_2G00150380 Rroxscaffold_7G00165160 |
| rosa_rugosa | Rorug02G0014500 Rorug06G0318200 Rorug06G0318300 Rorug06G0318300 |
| rosa_samantha | Rh2AG060300 Rh2BG059000 Rh2CG060800 Rh2DG059600 Rh6AG431800 Rh6BG470800 Rh6CG444200 Rh6DG431000 |
| rosa_wichuraiana | Rw2G004960 Rw6G037430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 2827, 4397 |
| AccB1I | GGYRCC | 1 cut(s) | 808 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2040 |
| AccI | GTMKAC | 2 cut(s) | 3835, 3864 |
| AccII | CGCG | 2 cut(s) | 472, 3428 |
| AciI | CCGC | 8 cut(s) | 472, 515, 954, 2920, 3426, 3777, 4149, 4284 |
| AclWI | GGATC | 7 cut(s) | 90, 482, 983, 996, 2054, 2457, 3413 |
| AcsI | RAATTY | 7 cut(s) | 421, 967, 1390, 1798, 2681, 3490, 3825 |
| AcuI | CTGAAG | 5 cut(s) | 1044, 2825, 2979, 3591, 3741 |
| AfaI | GTAC | 8 cut(s) | 201, 737, 1092, 1301, 1987, 2767, 3165, 3693 |
| AflII | CTTAAG | 1 cut(s) | 905 |
| AjnI | CCWGG | 7 cut(s) | 1282, 1599, 2853, 3017, 3369, 4032, 4428 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 411, 443, 4417, 4449 |
| AleI | CACNNNNGTG | 1 cut(s) | 1217 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1769, 1801 |
| Alw21I | GWGCWC | 2 cut(s) | 527, 3723 |
| Alw26I | GTCTC | 4 cut(s) | 1937, 1985, 2006, 2628 |
| AlwI | GGATC | 7 cut(s) | 90, 482, 983, 996, 2054, 2457, 3413 |
| AoxI | GGCC | 5 cut(s) | 653, 2297, 3324, 3995, 4437 |
| ApaI | GGGCCC | 1 cut(s) | 4441 |
| ApoI | RAATTY | 7 cut(s) | 421, 967, 1390, 1798, 2681, 3490, 3825 |
| AseI | ATTAAT | 2 cut(s) | 53, 2469 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 576, 2640, 2930, 3825, 4181, 4327 |
| AspA2I | CCTAGG | 1 cut(s) | 1837 |
| AspLEI | GCGC | 3 cut(s) | 376, 1227, 3430 |
| AspS9I | GGNCC | 7 cut(s) | 28, 283, 866, 2756, 3995, 4437, 4438 |
| AsuHPI | GGTGA | 3 cut(s) | 793, 1902, 3773 |
| AsuNHI | GCTAGC | 1 cut(s) | 2263 |
| AvaII | GGWCC | 4 cut(s) | 28, 283, 866, 2756 |
| AvrII | CCTAGG | 1 cut(s) | 1837 |
| AxyI | CCTNAGG | 3 cut(s) | 993, 1008, 1512 |
| BaeGI | GKGCMC | 1 cut(s) | 4441 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2549, 2582, 3288, 3321 |
| BamHI | GGATCC | 1 cut(s) | 988 |
| BanI | GGYRCC | 1 cut(s) | 808 |
| BanII | GRGCYC | 4 cut(s) | 112, 527, 3188, 4441 |
| BbsI | GAAGAC | 2 cut(s) | 1737, 4099 |
| Bbv12I | GWGCWC | 2 cut(s) | 527, 3723 |
| BbvCI | CCTCAGC | 2 cut(s) | 2268, 2294 |
| BceAI | ACGGC | 3 cut(s) | 737, 822, 1883 |
| BciT130I | CCWGG | 7 cut(s) | 1284, 1601, 2855, 3019, 3371, 4034, 4430 |
| BciVI | GTATCC | 1 cut(s) | 1110 |
| BclI | TGATCA | 6 cut(s) | 90, 190, 616, 658, 1396, 3043 |
| BcoDI | GTCTC | 4 cut(s) | 1937, 1985, 2006, 2628 |
| BfaI | CTAG | 6 cut(s) | 981, 1838, 2264, 2957, 3440, 4442 |
| BfmI | CTRYAG | 4 cut(s) | 13, 1935, 2064, 2895 |
| BfrI | CTTAAG | 1 cut(s) | 905 |
| BfuAI | ACCTGC | 2 cut(s) | 2827, 4397 |
| BfuI | GTATCC | 1 cut(s) | 1110 |
| BglII | AGATCT | 1 cut(s) | 2730 |
| BlnI | CCTAGG | 1 cut(s) | 1837 |
| BlpI | GCTNAGC | 2 cut(s) | 1312, 2310 |
| BmcAI | AGTACT | 2 cut(s) | 201, 737 |
| Bme1390I | CCNGG | 7 cut(s) | 1284, 1601, 2855, 3019, 3371, 4034, 4430 |
| Bme18I | GGWCC | 4 cut(s) | 28, 283, 866, 2756 |
| BmgT120I | GGNCC | 7 cut(s) | 28, 283, 866, 2756, 3995, 4437, 4438 |
| BmiI | GGNNCC | 6 cut(s) | 810, 990, 2400, 2802, 3016, 4439 |
| BmrFI | CCNGG | 7 cut(s) | 1284, 1601, 2855, 3019, 3371, 4034, 4430 |
| BmrI | ACTGGG | 2 cut(s) | 226, 1550 |
| BmtI | GCTAGC | 1 cut(s) | 2267 |
| BmuI | ACTGGG | 2 cut(s) | 226, 1550 |
| BpiI | GAAGAC | 2 cut(s) | 1737, 4099 |
| BpmI | CTGGAG | 7 cut(s) | 363, 704, 1110, 1266, 3033, 3392, 3936 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2268, 2294, 2357 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1312, 2310 |
| BpuEI | CTTGAG | 7 cut(s) | 754, 1722, 1914, 2167, 3011, 3467, 3891 |
| Bsa29I | ATCGAT | 1 cut(s) | 477 |
| BsaAI | YACGTR | 1 cut(s) | 3973 |
| BsaBI | GATNNNNATC | 1 cut(s) | 615 |
| BsaJI | CCNNGG | 3 cut(s) | 1837, 2864, 3080 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1769, 1799, 3596, 3626, 3909, 3939 |
| Bse21I | CCTNAGG | 3 cut(s) | 993, 1008, 1512 |
| Bse3DI | GCAATG | 4 cut(s) | 30, 821, 2915, 3255 |
| Bse8I | GATNNNNATC | 1 cut(s) | 615 |
| BseBI | CCWGG | 7 cut(s) | 1284, 1601, 2855, 3019, 3371, 4034, 4430 |
| BseCI | ATCGAT | 1 cut(s) | 477 |
| BseDI | CCNNGG | 3 cut(s) | 1837, 2864, 3080 |
| BseJI | GATNNNNATC | 1 cut(s) | 615 |
| BseMI | GCAATG | 4 cut(s) | 30, 821, 2915, 3255 |
| BseRI | GAGGAG | 3 cut(s) | 949, 2460, 3389 |
| BseSI | GKGCMC | 1 cut(s) | 4441 |
| Bsh1236I | CGCG | 2 cut(s) | 472, 3428 |
| BshFI | GGCC | 5 cut(s) | 655, 2299, 3326, 3997, 4439 |
| BshNI | GGYRCC | 1 cut(s) | 808 |
| BshVI | ATCGAT | 1 cut(s) | 477 |
| BsiHKAI | GWGCWC | 2 cut(s) | 527, 3723 |
| BsiSI | CCGG | 1 cut(s) | 1114 |
| BslFI | GGGAC | 3 cut(s) | 332, 1413, 4365 |
| BsmAI | GTCTC | 4 cut(s) | 1937, 1985, 2006, 2628 |
| BsmFI | GGGAC | 3 cut(s) | 332, 1413, 4365 |
| BsmI | GAATGC | 2 cut(s) | 3215, 4134 |
| BsnI | GGCC | 5 cut(s) | 655, 2299, 3326, 3997, 4439 |
| Bsp120I | GGGCCC | 1 cut(s) | 4437 |
| Bsp1286I | GDGCHC | 5 cut(s) | 112, 527, 3188, 3723, 4441 |
| Bsp1407I | TGTACA | 1 cut(s) | 1985 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1312, 2310 |
| Bsp19I | CCATGG | 1 cut(s) | 2864 |
| BspACI | CCGC | 8 cut(s) | 472, 515, 954, 2920, 3426, 3777, 4149, 4284 |
| BspANI | GGCC | 5 cut(s) | 655, 2299, 3326, 3997, 4439 |
| BspDI | ATCGAT | 1 cut(s) | 477 |
| BspFNI | CGCG | 2 cut(s) | 472, 3428 |
| BspHI | TCATGA | 1 cut(s) | 1066 |
| BspLI | GGNNCC | 6 cut(s) | 810, 990, 2400, 2802, 3016, 4439 |
| BspMAI | CTGCAG | 2 cut(s) | 1939, 2068 |
| BspMI | ACCTGC | 2 cut(s) | 2827, 4397 |
| BspOI | GCTAGC | 1 cut(s) | 2267 |
| BspPI | GGATC | 7 cut(s) | 90, 482, 983, 996, 2054, 2457, 3413 |
| BspQI | GCTCTTC | 1 cut(s) | 1103 |
| BspT107I | GGYRCC | 1 cut(s) | 808 |
| BspTI | CTTAAG | 1 cut(s) | 905 |
| BsrDI | GCAATG | 4 cut(s) | 30, 821, 2915, 3255 |
| BsrGI | TGTACA | 1 cut(s) | 1985 |
| BssECI | CCNNGG | 3 cut(s) | 1837, 2864, 3080 |
| BssNAI | GTATAC | 1 cut(s) | 3865 |
| BssT1I | CCWWGG | 2 cut(s) | 1837, 2864 |
| Bst1107I | GTATAC | 1 cut(s) | 3865 |
| Bst2UI | CCWGG | 7 cut(s) | 1284, 1601, 2855, 3019, 3371, 4034, 4430 |
| Bst4CI | ACNGT | 7 cut(s) | 64, 507, 1054, 1958, 2098, 2237, 2622 |
| Bst6I | CTCTTC | 4 cut(s) | 1103, 2838, 2883, 3117 |
| BstAFI | CTTAAG | 1 cut(s) | 905 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 203, 3395 |
| BstAUI | TGTACA | 1 cut(s) | 1985 |
| BstBAI | YACGTR | 1 cut(s) | 3973 |
| BstDSI | CCRYGG | 1 cut(s) | 2864 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 996 |
| BstFNI | CGCG | 2 cut(s) | 472, 3428 |
| BstHHI | GCGC | 3 cut(s) | 376, 1227, 3430 |
| BstMAI | GTCTC | 4 cut(s) | 1937, 1985, 2006, 2628 |
| BstNI | CCWGG | 7 cut(s) | 1284, 1601, 2855, 3019, 3371, 4034, 4430 |
| BstNSI | RCATGY | 6 cut(s) | 1195, 1632, 3280, 3741, 3897, 4358 |
| BstSCI | CCNGG | 7 cut(s) | 1282, 1599, 2853, 3017, 3369, 4032, 4428 |
| BstSFI | CTRYAG | 4 cut(s) | 13, 1935, 2064, 2895 |
| BstSLI | GKGCMC | 1 cut(s) | 4441 |
| BstSNI | TACGTA | 1 cut(s) | 3973 |
| BstUI | CGCG | 2 cut(s) | 472, 3428 |
| BstV2I | GAAGAC | 2 cut(s) | 1737, 4099 |
| BstX2I | RGATCY | 3 cut(s) | 988, 2462, 2730 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3656, 4339 |
| BstYI | RGATCY | 3 cut(s) | 988, 2462, 2730 |
| BstZ17I | GTATAC | 1 cut(s) | 3865 |
| Bsu15I | ATCGAT | 1 cut(s) | 477 |
| Bsu36I | CCTNAGG | 3 cut(s) | 993, 1008, 1512 |
| BsuI | GTATCC | 1 cut(s) | 1110 |
| BsuRI | GGCC | 5 cut(s) | 655, 2299, 3326, 3997, 4439 |
| BsuTUI | ATCGAT | 1 cut(s) | 477 |
| BtgI | CCRYGG | 1 cut(s) | 2864 |
| BtgZI | GCGATG | 1 cut(s) | 1636 |
| BtsI | GCAGTG | 1 cut(s) | 1667 |
| BtsIMutI | CAGTG | 9 cut(s) | 69, 1533, 1667, 1851, 1924, 2221, 3009, 3421, 3912 |
| BveI | ACCTGC | 2 cut(s) | 2827, 4397 |
| CciI | TCATGA | 1 cut(s) | 1066 |
| CfoI | GCGC | 3 cut(s) | 376, 1227, 3430 |
| Cfr13I | GGNCC | 7 cut(s) | 28, 283, 866, 2756, 3995, 4437, 4438 |
| ClaI | ATCGAT | 1 cut(s) | 477 |
| Csp6I | GTAC | 8 cut(s) | 200, 736, 1091, 1300, 1986, 2766, 3164, 3692 |
| CviQI | GTAC | 8 cut(s) | 200, 736, 1091, 1300, 1986, 2766, 3164, 3692 |
| DraI | TTTAAA | 2 cut(s) | 1962, 3196 |
| Eam1104I | CTCTTC | 4 cut(s) | 1103, 2838, 2883, 3117 |
| EarI | CTCTTC | 4 cut(s) | 1103, 2838, 2883, 3117 |
| EciI | GGCGGA | 1 cut(s) | 943 |
| Ecl136II | GAGCTC | 1 cut(s) | 525 |
| Eco105I | TACGTA | 1 cut(s) | 3973 |
| Eco130I | CCWWGG | 2 cut(s) | 1837, 2864 |
| Eco147I | AGGCCT | 2 cut(s) | 655, 3326 |
| Eco24I | GRGCYC | 4 cut(s) | 112, 527, 3188, 4441 |
| Eco32I | GATATC | 1 cut(s) | 1926 |
| Eco47I | GGWCC | 4 cut(s) | 28, 283, 866, 2756 |
| Eco53kI | GAGCTC | 1 cut(s) | 525 |
| Eco57I | CTGAAG | 5 cut(s) | 1044, 2825, 2979, 3591, 3741 |
| Eco81I | CCTNAGG | 3 cut(s) | 993, 1008, 1512 |
| EcoICRI | GAGCTC | 1 cut(s) | 525 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 996 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3995, 4438 |
| EcoRI | GAATTC | 2 cut(s) | 1390, 3490 |
| EcoRII | CCWGG | 7 cut(s) | 1282, 1599, 2853, 3017, 3369, 4032, 4428 |
| EcoRV | GATATC | 1 cut(s) | 1926 |
| EcoT14I | CCWWGG | 2 cut(s) | 1837, 2864 |
| EcoT22I | ATGCAT | 4 cut(s) | 2775, 3215, 3461, 4168 |
| EcoT38I | GRGCYC | 4 cut(s) | 112, 527, 3188, 4441 |
| ErhI | CCWWGG | 2 cut(s) | 1837, 2864 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 186, 218, 3142, 3174 |
| FaqI | GGGAC | 3 cut(s) | 332, 1413, 4365 |
| FauNDI | CATATG | 1 cut(s) | 1582 |
| FbaI | TGATCA | 6 cut(s) | 90, 190, 616, 658, 1396, 3043 |
| FblI | GTMKAC | 2 cut(s) | 3835, 3864 |
| FriOI | GRGCYC | 4 cut(s) | 112, 527, 3188, 4441 |
| FspBI | CTAG | 6 cut(s) | 981, 1838, 2264, 2957, 3440, 4442 |
| GlaI | GCGC | 3 cut(s) | 375, 1226, 3429 |
| GsuI | CTGGAG | 7 cut(s) | 363, 704, 1110, 1266, 3033, 3392, 3936 |
| HaeIII | GGCC | 5 cut(s) | 655, 2299, 3326, 3997, 4439 |
| HapII | CCGG | 1 cut(s) | 1114 |
| HhaI | GCGC | 3 cut(s) | 376, 1227, 3430 |
| Hin6I | GCGC | 3 cut(s) | 374, 1225, 3428 |
| HinP1I | GCGC | 3 cut(s) | 374, 1225, 3428 |
| HincII | GTYRAC | 1 cut(s) | 457 |
| HindII | GTYRAC | 1 cut(s) | 457 |
| HindIII | AAGCTT | 2 cut(s) | 269, 3198 |
| HpaII | CCGG | 1 cut(s) | 1114 |
| HphI | GGTGA | 3 cut(s) | 793, 1902, 3773 |
| Hpy166II | GTNNAC | 6 cut(s) | 457, 1236, 2101, 3836, 3865, 4317 |
| Hpy8I | GTNNAC | 6 cut(s) | 457, 1236, 2101, 3836, 3865, 4317 |
| HpyCH4III | ACNGT | 7 cut(s) | 64, 507, 1054, 1958, 2098, 2237, 2622 |
| HpyCH4IV | ACGT | 1 cut(s) | 3972 |
| HpySE526I | ACGT | 1 cut(s) | 3972 |
| HspAI | GCGC | 3 cut(s) | 374, 1225, 3428 |
| Ksp22I | TGATCA | 6 cut(s) | 90, 190, 616, 658, 1396, 3043 |
| LguI | GCTCTTC | 1 cut(s) | 1103 |
| LmnI | GCTCC | 7 cut(s) | 490, 685, 2398, 2595, 2806, 2809, 3014 |
| MaeI | CTAG | 6 cut(s) | 981, 1838, 2264, 2957, 3440, 4442 |
| MaeII | ACGT | 1 cut(s) | 3972 |
| MfeI | CAATTG | 3 cut(s) | 528, 2547, 2823 |
| MflI | RGATCY | 3 cut(s) | 988, 2462, 2730 |
| MhlI | GDGCHC | 5 cut(s) | 112, 527, 3188, 3723, 4441 |
| MlyI | GAGTC | 8 cut(s) | 354, 641, 983, 1313, 1751, 2042, 2900, 3011 |
| MmeI | TCCRAC | 3 cut(s) | 1355, 2179, 4261 |
| Mph1103I | ATGCAT | 4 cut(s) | 2775, 3215, 3461, 4168 |
| MroXI | GAANNNNTTC | 6 cut(s) | 576, 2640, 2930, 3825, 4181, 4327 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1217, 1241, 3093, 3275, 3654, 4337 |
| MspA1I | CMGCKG | 5 cut(s) | 88, 608, 2018, 2293, 3777 |
| MspCI | CTTAAG | 1 cut(s) | 905 |
| MspI | CCGG | 1 cut(s) | 1114 |
| MspR9I | CCNGG | 7 cut(s) | 1284, 1601, 2855, 3019, 3371, 4034, 4430 |
| MunI | CAATTG | 3 cut(s) | 528, 2547, 2823 |
| Mva1269I | GAATGC | 2 cut(s) | 3215, 4134 |
| MvaI | CCWGG | 7 cut(s) | 1284, 1601, 2855, 3019, 3371, 4034, 4430 |
| MvnI | CGCG | 2 cut(s) | 472, 3428 |
| NcoI | CCATGG | 1 cut(s) | 2864 |
| NdeI | CATATG | 1 cut(s) | 1582 |
| NheI | GCTAGC | 1 cut(s) | 2263 |
| NlaIV | GGNNCC | 6 cut(s) | 810, 990, 2400, 2802, 3016, 4439 |
| NmeAIII | GCCGAG | 1 cut(s) | 3105 |
| NmuCI | GTSAC | 4 cut(s) | 1550, 1841, 3733, 3761 |
| NsiI | ATGCAT | 4 cut(s) | 2775, 3215, 3461, 4168 |
| NspI | RCATGY | 6 cut(s) | 1195, 1632, 3280, 3741, 3897, 4358 |
| OliI | CACNNNNGTG | 1 cut(s) | 1217 |
| PaeI | GCATGC | 1 cut(s) | 3897 |
| PagI | TCATGA | 1 cut(s) | 1066 |
| PceI | AGGCCT | 2 cut(s) | 655, 3326 |
| PciSI | GCTCTTC | 1 cut(s) | 1103 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2109, 3500 |
| PctI | GAATGC | 2 cut(s) | 3215, 4134 |
| PdmI | GAANNNNTTC | 6 cut(s) | 576, 2640, 2930, 3825, 4181, 4327 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2040 |
| PfoI | TCCNGGA | 2 cut(s) | 1599, 4032 |
| PleI | GAGTC | 8 cut(s) | 353, 640, 982, 1313, 1750, 2042, 2899, 3010 |
| PpsI | GAGTC | 8 cut(s) | 353, 640, 982, 1313, 1750, 2042, 2899, 3010 |
| Ppu21I | YACGTR | 1 cut(s) | 3973 |
| PshBI | ATTAAT | 2 cut(s) | 53, 2469 |
| Psp124BI | GAGCTC | 1 cut(s) | 527 |
| Psp6I | CCWGG | 7 cut(s) | 1282, 1599, 2853, 3017, 3369, 4032, 4428 |
| PspGI | CCWGG | 7 cut(s) | 1282, 1599, 2853, 3017, 3369, 4032, 4428 |
| PspN4I | GGNNCC | 6 cut(s) | 810, 990, 2400, 2802, 3016, 4439 |
| PspOMI | GGGCCC | 1 cut(s) | 4437 |
| PspPI | GGNCC | 7 cut(s) | 28, 283, 866, 2756, 3995, 4437, 4438 |
| PstI | CTGCAG | 2 cut(s) | 1939, 2068 |
| PsuI | RGATCY | 3 cut(s) | 988, 2462, 2730 |
| PvuII | CAGCTG | 4 cut(s) | 88, 608, 2018, 2293 |
| RsaI | GTAC | 8 cut(s) | 201, 737, 1092, 1301, 1987, 2767, 3165, 3693 |
| RsaNI | GTAC | 8 cut(s) | 200, 736, 1091, 1300, 1986, 2766, 3164, 3692 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1217, 1241, 3093, 3275, 3654, 4337 |
| SacI | GAGCTC | 1 cut(s) | 527 |
| SapI | GCTCTTC | 1 cut(s) | 1103 |
| Sau96I | GGNCC | 7 cut(s) | 28, 283, 866, 2756, 3995, 4437, 4438 |
| ScaI | AGTACT | 2 cut(s) | 201, 737 |
| SchI | GAGTC | 8 cut(s) | 354, 641, 983, 1313, 1751, 2042, 2900, 3011 |
| ScrFI | CCNGG | 7 cut(s) | 1284, 1601, 2855, 3019, 3371, 4034, 4430 |
| SduI | GDGCHC | 5 cut(s) | 112, 527, 3188, 3723, 4441 |
| SfcI | CTRYAG | 4 cut(s) | 13, 1935, 2064, 2895 |
| SinI | GGWCC | 4 cut(s) | 28, 283, 866, 2756 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1217, 1241, 3093, 3275, 3654, 4337 |
| SmlI | CTYRAG | 8 cut(s) | 769, 905, 1737, 1929, 2146, 3026, 3482, 3906 |
| SmoI | CTYRAG | 8 cut(s) | 769, 905, 1737, 1929, 2146, 3026, 3482, 3906 |
| SnaBI | TACGTA | 1 cut(s) | 3973 |
| SphI | GCATGC | 1 cut(s) | 3897 |
| SseBI | AGGCCT | 2 cut(s) | 655, 3326 |
| SsiI | CCGC | 8 cut(s) | 472, 515, 954, 2920, 3426, 3777, 4149, 4284 |
| SspI | AATATT | 2 cut(s) | 2181, 4266 |
| SspMI | CTAG | 6 cut(s) | 981, 1838, 2264, 2957, 3440, 4442 |
| SstI | GAGCTC | 1 cut(s) | 527 |
| StuI | AGGCCT | 2 cut(s) | 655, 3326 |
| StyD4I | CCNGG | 7 cut(s) | 1282, 1599, 2853, 3017, 3369, 4032, 4428 |
| StyI | CCWWGG | 2 cut(s) | 1837, 2864 |
| TaaI | ACNGT | 7 cut(s) | 64, 507, 1054, 1958, 2098, 2237, 2622 |
| TaiI | ACGT | 1 cut(s) | 3975 |
| TaqI | TCGA | 7 cut(s) | 181, 234, 246, 477, 2112, 2555, 4321 |
| TatI | WGTACW | 7 cut(s) | 199, 735, 1090, 1299, 1985, 2765, 3163 |
| TauI | GCSGC | 1 cut(s) | 3428 |
| TscAI | CASTG | 9 cut(s) | 69, 1540, 1674, 1858, 1924, 2221, 3016, 3421, 3919 |
| TseFI | GTSAC | 4 cut(s) | 1550, 1841, 3733, 3761 |
| Tsp45I | GTSAC | 4 cut(s) | 1550, 1841, 3733, 3761 |
| TspGWI | ACGGA | 2 cut(s) | 421, 1090 |
| TspRI | CASTG | 9 cut(s) | 69, 1540, 1674, 1858, 1924, 2221, 3016, 3421, 3919 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2040 |
| Vha464I | CTTAAG | 1 cut(s) | 905 |
| VpaK11BI | GGWCC | 4 cut(s) | 28, 283, 866, 2756 |
| VspI | ATTAAT | 2 cut(s) | 53, 2469 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 996 |
| XapI | RAATTY | 7 cut(s) | 421, 967, 1390, 1798, 2681, 3490, 3825 |
| XbaI | TCTAGA | 1 cut(s) | 2956 |
| XceI | RCATGY | 6 cut(s) | 1195, 1632, 3280, 3741, 3897, 4358 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 338 |
| XmaJI | CCTAGG | 1 cut(s) | 1837 |
| XmiI | GTMKAC | 2 cut(s) | 3835, 3864 |
| XmnI | GAANNNNTTC | 6 cut(s) | 576, 2640, 2930, 3825, 4181, 4327 |
| XspI | CTAG | 6 cut(s) | 981, 1838, 2264, 2957, 3440, 4442 |
| ZrmI | AGTACT | 2 cut(s) | 201, 737 |
| Zsp2I | ATGCAT | 4 cut(s) | 2775, 3215, 3461, 4168 |