RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380 |
| malus_domestica | MD02G1056600.v1.1 MD15G1011400.v1.1 MD15G1191200.v1.1 |
| prunus_persica | Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.7G226000_v2.0.a1 Prupe.7G226000_v2.0.a1 |
| pyrus_communis | pycom02g04580 pycom02g04590 pycom15g17120 |
| rosa_chinensis | RchiOBHm_Chr2g0091211 RchiOBHm_Chr6g0302931 RchiOBHm_Chr6g0302941 |
| rosa_laevigata | RLG00000011123 RLG00000016192 |
| rosa_multiflora | Rmu_sc0002270.1_g000015 Rmu_sc0033272.1_g000001 Rmu_ssc0000460.1_g000018 |
| rosa_roxburghii | Rroxscaffold_2G00150380 Rroxscaffold_7G00165160 |
| rosa_rugosa | Rorug02G0014500 Rorug06G0318200 Rorug06G0318300 Rorug06G0318300 |
| rosa_samantha | Rh2AG060300 Rh2BG059000 Rh2CG060800 Rh2DG059600 Rh6AG431800 Rh6BG470800 Rh6CG444200 Rh6DG431000 |
| rosa_wichuraiana | Rw2G004960 Rw6G037430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1526 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 533, 2569, 3989 |
| Acc65I | GGTACC | 1 cut(s) | 3938 |
| AccB1I | GGYRCC | 1 cut(s) | 3938 |
| AccBSI | CCGCTC | 1 cut(s) | 1636 |
| AccI | GTMKAC | 2 cut(s) | 2434, 2782 |
| AccII | CGCG | 7 cut(s) | 176, 1351, 1816, 1818, 2487, 2916, 3755 |
| AccIII | TCCGGA | 1 cut(s) | 2597 |
| AclI | AACGTT | 1 cut(s) | 2932 |
| AcoI | YGGCCR | 6 cut(s) | 46, 171, 2427, 3639, 3840, 4009 |
| AcsI | RAATTY | 6 cut(s) | 976, 1596, 1675, 3453, 3550, 4014 |
| AcuI | CTGAAG | 3 cut(s) | 852, 966, 2989 |
| AcyI | GRCGYC | 1 cut(s) | 319 |
| AfeI | AGCGCT | 1 cut(s) | 2094 |
| AflII | CTTAAG | 1 cut(s) | 3077 |
| AflIII | ACRYGT | 4 cut(s) | 528, 1983, 2937, 3562 |
| AgeI | ACCGGT | 1 cut(s) | 3506 |
| AjnI | CCWGG | 9 cut(s) | 168, 183, 930, 947, 1005, 1308, 1739, 2612, 3798 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 260, 292 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 783, 815 |
| Alw21I | GWGCWC | 6 cut(s) | 93, 414, 551, 1370, 1398, 3723 |
| Alw26I | GTCTC | 8 cut(s) | 314, 885, 1271, 1681, 1782, 1944, 2522, 2555 |
| Alw44I | GTGCAC | 1 cut(s) | 3719 |
| Ama87I | CYCGRG | 2 cut(s) | 86, 3306 |
| Aor13HI | TCCGGA | 1 cut(s) | 2597 |
| Aor51HI | AGCGCT | 1 cut(s) | 2094 |
| ApaLI | GTGCAC | 1 cut(s) | 3719 |
| ApoI | RAATTY | 6 cut(s) | 976, 1596, 1675, 3453, 3550, 4014 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 356, 388, 545, 577 |
| AsiGI | ACCGGT | 1 cut(s) | 3506 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3168 |
| Asp718I | GGTACC | 1 cut(s) | 3938 |
| AspLEI | GCGC | 6 cut(s) | 1353, 1550, 1818, 1849, 2095, 3143 |
| AspS9I | GGNCC | 2 cut(s) | 3238, 3952 |
| AsuC2I | CCSGG | 1 cut(s) | 795 |
| AsuHPI | GGTGA | 3 cut(s) | 226, 2581, 2602 |
| AvaI | CYCGRG | 2 cut(s) | 86, 3306 |
| AvaII | GGWCC | 1 cut(s) | 3952 |
| AxyI | CCTNAGG | 1 cut(s) | 3018 |
| BaeGI | GKGCMC | 2 cut(s) | 1343, 3723 |
| BalI | TGGCCA | 2 cut(s) | 3641, 3842 |
| BanI | GGYRCC | 1 cut(s) | 3938 |
| BanII | GRGCYC | 2 cut(s) | 93, 414 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2044, 2076 |
| BauI | CACGAG | 1 cut(s) | 1684 |
| Bbv12I | GWGCWC | 6 cut(s) | 93, 414, 551, 1370, 1398, 3723 |
| BccI | CCATC | 9 cut(s) | 1538, 1861, 1918, 2177, 2252, 3242, 3752, 3832, 4001 |
| BceAI | ACGGC | 4 cut(s) | 105, 710, 1134, 3452 |
| BciT130I | CCWGG | 9 cut(s) | 170, 185, 932, 949, 1007, 1310, 1741, 2614, 3800 |
| BclI | TGATCA | 2 cut(s) | 1167, 1698 |
| BcnI | CCSGG | 1 cut(s) | 795 |
| BcoDI | GTCTC | 8 cut(s) | 314, 885, 1271, 1681, 1782, 1944, 2522, 2555 |
| BfaI | CTAG | 6 cut(s) | 347, 419, 1245, 1434, 3138, 3330 |
| BfmI | CTRYAG | 4 cut(s) | 1137, 1755, 2007, 2393 |
| BfoI | RGCGCY | 3 cut(s) | 1850, 2096, 3144 |
| BfrI | CTTAAG | 1 cut(s) | 3077 |
| BlpI | GCTNAGC | 1 cut(s) | 2217 |
| BmcAI | AGTACT | 1 cut(s) | 855 |
| Bme18I | GGWCC | 1 cut(s) | 3952 |
| BmeT110I | CYCGRG | 2 cut(s) | 86, 3306 |
| BmgT120I | GGNCC | 2 cut(s) | 3238, 3952 |
| BmiI | GGNNCC | 5 cut(s) | 792, 942, 2226, 3538, 3940 |
| BmsI | GCATC | 4 cut(s) | 673, 3015, 3596, 3961 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1138, 1170, 3073, 3105 |
| BpmI | CTGGAG | 6 cut(s) | 298, 1028, 1140, 1677, 2391, 2715 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2217 |
| BpuEI | CTTGAG | 4 cut(s) | 1295, 1586, 2612, 2732 |
| BpuMI | CCSGG | 1 cut(s) | 795 |
| BsaAI | YACGTR | 2 cut(s) | 1338, 2903 |
| BsaHI | GRCGYC | 1 cut(s) | 319 |
| BsaI | GGTCTC | 2 cut(s) | 314, 1681 |
| BsaWI | WCCGGW | 3 cut(s) | 255, 2597, 3506 |
| Bse118I | RCCGGY | 2 cut(s) | 2429, 3506 |
| Bse1I | ACTGG | 7 cut(s) | 845, 1694, 1953, 2408, 3744, 3940, 4000 |
| Bse21I | CCTNAGG | 1 cut(s) | 3018 |
| Bse3DI | GCAATG | 3 cut(s) | 3415, 3423, 3616 |
| BseAI | TCCGGA | 1 cut(s) | 2597 |
| BseBI | CCWGG | 9 cut(s) | 170, 185, 932, 949, 1007, 1310, 1741, 2614, 3800 |
| BseGI | GGATG | 8 cut(s) | 29, 2188, 2356, 2594, 3030, 3253, 3611, 3763 |
| BseMI | GCAATG | 3 cut(s) | 3415, 3423, 3616 |
| BseNI | ACTGG | 7 cut(s) | 845, 1694, 1953, 2408, 3744, 3940, 4000 |
| BseRI | GAGGAG | 7 cut(s) | 217, 242, 278, 281, 419, 1018, 1076 |
| BseSI | GKGCMC | 2 cut(s) | 1343, 3723 |
| BseYI | CCCAGC | 1 cut(s) | 1777 |
| BsgI | GTGCAG | 2 cut(s) | 1458, 2212 |
| Bsh1236I | CGCG | 7 cut(s) | 176, 1351, 1816, 1818, 2487, 2916, 3755 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2133 |
| BshNI | GGYRCC | 1 cut(s) | 3938 |
| BshTI | ACCGGT | 1 cut(s) | 3506 |
| BsiEI | CGRYCG | 1 cut(s) | 2133 |
| BsiHKAI | GWGCWC | 6 cut(s) | 93, 414, 551, 1370, 1398, 3723 |
| BsiHKCI | CYCGRG | 2 cut(s) | 86, 3306 |
| BsiSI | CCGG | 5 cut(s) | 256, 795, 2430, 2598, 3507 |
| BslFI | GGGAC | 3 cut(s) | 469, 1221, 1296 |
| BsmAI | GTCTC | 8 cut(s) | 314, 885, 1271, 1681, 1782, 1944, 2522, 2555 |
| BsmBI | CGTCTC | 1 cut(s) | 1271 |
| BsmFI | GGGAC | 3 cut(s) | 469, 1221, 1296 |
| BsmI | GAATGC | 2 cut(s) | 1900, 3787 |
| Bso31I | GGTCTC | 2 cut(s) | 314, 1681 |
| BsoBI | CYCGRG | 2 cut(s) | 86, 3306 |
| Bsp1286I | GDGCHC | 7 cut(s) | 93, 414, 551, 1343, 1370, 1398, 3723 |
| Bsp13I | TCCGGA | 1 cut(s) | 2597 |
| Bsp1407I | TGTACA | 1 cut(s) | 3427 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2217 |
| BspEI | TCCGGA | 1 cut(s) | 2597 |
| BspFNI | CGCG | 7 cut(s) | 176, 1351, 1816, 1818, 2487, 2916, 3755 |
| BspLI | GGNNCC | 5 cut(s) | 792, 942, 2226, 3538, 3940 |
| BspMAI | CTGCAG | 4 cut(s) | 1141, 1759, 2011, 2397 |
| BspQI | GCTCTTC | 2 cut(s) | 402, 2807 |
| BspT107I | GGYRCC | 1 cut(s) | 3938 |
| BspTI | CTTAAG | 1 cut(s) | 3077 |
| BspTNI | GGTCTC | 2 cut(s) | 314, 1681 |
| BsrBI | CCGCTC | 1 cut(s) | 1636 |
| BsrDI | GCAATG | 3 cut(s) | 3415, 3423, 3616 |
| BsrFI | RCCGGY | 2 cut(s) | 2429, 3506 |
| BsrGI | TGTACA | 1 cut(s) | 3427 |
| BsrI | ACTGG | 7 cut(s) | 845, 1694, 1953, 2408, 3744, 3940, 4000 |
| BssAI | RCCGGY | 2 cut(s) | 2429, 3506 |
| BssNI | GRCGYC | 1 cut(s) | 319 |
| BssSI | CACGAG | 1 cut(s) | 1684 |
| BssT1I | CCWWGG | 5 cut(s) | 1038, 1221, 1531, 2958, 3093 |
| Bst2BI | CACGAG | 1 cut(s) | 1684 |
| Bst2UI | CCWGG | 9 cut(s) | 170, 185, 932, 949, 1007, 1310, 1741, 2614, 3800 |
| BstACI | GRCGYC | 1 cut(s) | 319 |
| BstAFI | CTTAAG | 1 cut(s) | 3077 |
| BstAUI | TGTACA | 1 cut(s) | 3427 |
| BstBAI | YACGTR | 2 cut(s) | 1338, 2903 |
| BstDSI | CCRYGG | 3 cut(s) | 174, 3642, 3753 |
| BstF5I | GGATG | 8 cut(s) | 29, 2188, 2356, 2594, 3030, 3253, 3611, 3763 |
| BstFNI | CGCG | 7 cut(s) | 176, 1351, 1816, 1818, 2487, 2916, 3755 |
| BstH2I | RGCGCY | 3 cut(s) | 1850, 2096, 3144 |
| BstHHI | GCGC | 6 cut(s) | 1353, 1550, 1818, 1849, 2095, 3143 |
| BstMAI | GTCTC | 8 cut(s) | 314, 885, 1271, 1681, 1782, 1944, 2522, 2555 |
| BstMCI | CGRYCG | 1 cut(s) | 2133 |
| BstNI | CCWGG | 9 cut(s) | 170, 185, 932, 949, 1007, 1310, 1741, 2614, 3800 |
| BstNSI | RCATGY | 5 cut(s) | 532, 1987, 2875, 2941, 3566 |
| BstSFI | CTRYAG | 4 cut(s) | 1137, 1755, 2007, 2393 |
| BstSLI | GKGCMC | 2 cut(s) | 1343, 3723 |
| BstUI | CGCG | 7 cut(s) | 176, 1351, 1816, 1818, 2487, 2916, 3755 |
| BstX2I | RGATCY | 1 cut(s) | 3013 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2777, 3248 |
| BstYI | RGATCY | 1 cut(s) | 3013 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3018 |
| BtgI | CCRYGG | 3 cut(s) | 174, 3642, 3753 |
| BtgZI | GCGATG | 1 cut(s) | 3851 |
| BtsCI | GGATG | 8 cut(s) | 29, 2188, 2356, 2594, 3030, 3253, 3611, 3763 |
| BtsI | GCAGTG | 5 cut(s) | 51, 717, 1446, 2016, 2047 |
| CfoI | GCGC | 6 cut(s) | 1353, 1550, 1818, 1849, 2095, 3143 |
| Cfr10I | RCCGGY | 2 cut(s) | 2429, 3506 |
| Cfr13I | GGNCC | 2 cut(s) | 3238, 3952 |
| Cfr42I | CCGCGG | 2 cut(s) | 177, 3756 |
| CseI | GACGC | 4 cut(s) | 327, 338, 1816, 2905 |
| CsiI | ACCWGGT | 1 cut(s) | 3798 |
| CspAI | ACCGGT | 1 cut(s) | 3506 |
| DraI | TTTAAA | 1 cut(s) | 1855 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 533, 2569, 3989 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 533, 2569, 3989 |
| EaeI | YGGCCR | 6 cut(s) | 46, 171, 2427, 3639, 3840, 4009 |
| EciI | GGCGGA | 3 cut(s) | 13, 83, 107 |
| Ecl136II | GAGCTC | 2 cut(s) | 91, 412 |
| Eco130I | CCWWGG | 5 cut(s) | 1038, 1221, 1531, 2958, 3093 |
| Eco147I | AGGCCT | 1 cut(s) | 3066 |
| Eco24I | GRGCYC | 2 cut(s) | 93, 414 |
| Eco31I | GGTCTC | 2 cut(s) | 314, 1681 |
| Eco32I | GATATC | 1 cut(s) | 3055 |
| Eco47I | GGWCC | 1 cut(s) | 3952 |
| Eco47III | AGCGCT | 1 cut(s) | 2094 |
| Eco53kI | GAGCTC | 2 cut(s) | 91, 412 |
| Eco57I | CTGAAG | 3 cut(s) | 852, 966, 2989 |
| Eco81I | CCTNAGG | 1 cut(s) | 3018 |
| Eco88I | CYCGRG | 2 cut(s) | 86, 3306 |
| EcoICRI | GAGCTC | 2 cut(s) | 91, 412 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3952 |
| EcoRI | GAATTC | 2 cut(s) | 976, 4014 |
| EcoRII | CCWGG | 9 cut(s) | 168, 183, 930, 947, 1005, 1308, 1739, 2612, 3798 |
| EcoRV | GATATC | 1 cut(s) | 3055 |
| EcoT14I | CCWWGG | 5 cut(s) | 1038, 1221, 1531, 2958, 3093 |
| EcoT38I | GRGCYC | 2 cut(s) | 93, 414 |
| ErhI | CCWWGG | 5 cut(s) | 1038, 1221, 1531, 2958, 3093 |
| Esp3I | CGTCTC | 1 cut(s) | 1271 |
| FaqI | GGGAC | 3 cut(s) | 469, 1221, 1296 |
| FauI | CCCGC | 4 cut(s) | 220, 715, 2921, 3825 |
| FauNDI | CATATG | 1 cut(s) | 1291 |
| FbaI | TGATCA | 2 cut(s) | 1167, 1698 |
| FblI | GTMKAC | 2 cut(s) | 2434, 2782 |
| FokI | GGATG | 8 cut(s) | 16, 2195, 2363, 2581, 3037, 3260, 3618, 3770 |
| FriOI | GRGCYC | 2 cut(s) | 93, 414 |
| FspBI | CTAG | 6 cut(s) | 347, 419, 1245, 1434, 3138, 3330 |
| GlaI | GCGC | 6 cut(s) | 1352, 1549, 1817, 1848, 2094, 3142 |
| GsaI | CCCAGC | 1 cut(s) | 1781 |
| GsuI | CTGGAG | 6 cut(s) | 298, 1028, 1140, 1677, 2391, 2715 |
| HaeII | RGCGCY | 3 cut(s) | 1850, 2096, 3144 |
| HapII | CCGG | 5 cut(s) | 256, 795, 2430, 2598, 3507 |
| HgaI | GACGC | 4 cut(s) | 327, 338, 1816, 2905 |
| HhaI | GCGC | 6 cut(s) | 1353, 1550, 1818, 1849, 2095, 3143 |
| Hin1I | GRCGYC | 1 cut(s) | 319 |
| Hin6I | GCGC | 6 cut(s) | 1351, 1548, 1816, 1847, 2093, 3141 |
| HinP1I | GCGC | 6 cut(s) | 1351, 1548, 1816, 1847, 2093, 3141 |
| HincII | GTYRAC | 3 cut(s) | 261, 2071, 2997 |
| HindII | GTYRAC | 3 cut(s) | 261, 2071, 2997 |
| HpaI | GTTAAC | 1 cut(s) | 2071 |
| HpaII | CCGG | 5 cut(s) | 256, 795, 2430, 2598, 3507 |
| HphI | GGTGA | 3 cut(s) | 226, 2581, 2602 |
| Hpy99I | CGWCG | 1 cut(s) | 539 |
| HpyCH4IV | ACGT | 4 cut(s) | 1337, 2902, 2932, 3984 |
| HpySE526I | ACGT | 4 cut(s) | 1337, 2902, 2932, 3984 |
| Hsp92I | GRCGYC | 1 cut(s) | 319 |
| HspAI | GCGC | 6 cut(s) | 1351, 1548, 1816, 1847, 2093, 3141 |
| Kpn2I | TCCGGA | 1 cut(s) | 2597 |
| KpnI | GGTACC | 1 cut(s) | 3942 |
| Ksp22I | TGATCA | 2 cut(s) | 1167, 1698 |
| KspAI | GTTAAC | 1 cut(s) | 2071 |
| KspI | CCGCGG | 2 cut(s) | 177, 3756 |
| LguI | GCTCTTC | 2 cut(s) | 402, 2807 |
| LmnI | GCTCC | 6 cut(s) | 96, 255, 589, 1049, 2230, 2906 |
| LweI | GCATC | 4 cut(s) | 673, 3015, 3596, 3961 |
| MabI | ACCWGGT | 1 cut(s) | 3798 |
| MaeI | CTAG | 6 cut(s) | 347, 419, 1245, 1434, 3138, 3330 |
| MaeII | ACGT | 4 cut(s) | 1337, 2902, 2932, 3984 |
| MaeIII | GTNAC | 7 cut(s) | 1267, 2651, 2933, 3034, 3325, 3469, 3991 |
| MbiI | CCGCTC | 1 cut(s) | 1636 |
| MfeI | CAATTG | 2 cut(s) | 3104, 3943 |
| MflI | RGATCY | 1 cut(s) | 3013 |
| MhlI | GDGCHC | 7 cut(s) | 93, 414, 551, 1343, 1370, 1398, 3723 |
| MlsI | TGGCCA | 2 cut(s) | 3641, 3842 |
| MluNI | TGGCCA | 2 cut(s) | 3641, 3842 |
| MlyI | GAGTC | 8 cut(s) | 1001, 1007, 1560, 1616, 1946, 3082, 3128, 4023 |
| MmeI | TCCRAC | 6 cut(s) | 549, 582, 712, 3784, 3819, 3839 |
| Mox20I | TGGCCA | 2 cut(s) | 3641, 3842 |
| MroI | TCCGGA | 1 cut(s) | 2597 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3168 |
| MscI | TGGCCA | 2 cut(s) | 3641, 3842 |
| MslI | CAYNNNNRTG | 2 cut(s) | 3246, 3716 |
| Msp20I | TGGCCA | 2 cut(s) | 3641, 3842 |
| MspA1I | CMGCKG | 6 cut(s) | 176, 1165, 2006, 3755, 3767, 4035 |
| MspCI | CTTAAG | 1 cut(s) | 3077 |
| MspI | CCGG | 5 cut(s) | 256, 795, 2430, 2598, 3507 |
| MunI | CAATTG | 2 cut(s) | 3104, 3943 |
| Mva1269I | GAATGC | 2 cut(s) | 1900, 3787 |
| MvaI | CCWGG | 9 cut(s) | 170, 185, 932, 949, 1007, 1310, 1741, 2614, 3800 |
| MvnI | CGCG | 7 cut(s) | 176, 1351, 1816, 1818, 2487, 2916, 3755 |
| NciI | CCSGG | 1 cut(s) | 795 |
| NdeI | CATATG | 1 cut(s) | 1291 |
| NlaIV | GGNNCC | 5 cut(s) | 792, 942, 2226, 3538, 3940 |
| NmeAIII | GCCGAG | 3 cut(s) | 24, 2022, 2490 |
| NmuCI | GTSAC | 3 cut(s) | 1267, 3469, 3991 |
| NspI | RCATGY | 5 cut(s) | 532, 1987, 2875, 2941, 3566 |
| PaeR7I | CTCGAG | 1 cut(s) | 3306 |
| PasI | CCCWGGG | 1 cut(s) | 1740 |
| PceI | AGGCCT | 1 cut(s) | 3066 |
| PciI | ACATGT | 4 cut(s) | 528, 1983, 2937, 3562 |
| PciSI | GCTCTTC | 2 cut(s) | 402, 2807 |
| PctI | GAATGC | 2 cut(s) | 1900, 3787 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3168 |
| PfeI | GAWTC | 9 cut(s) | 605, 798, 986, 1142, 1429, 1823, 2029, 2120, 2126 |
| PfoI | TCCNGGA | 3 cut(s) | 947, 1005, 1308 |
| PinAI | ACCGGT | 1 cut(s) | 3506 |
| PleI | GAGTC | 8 cut(s) | 1000, 1006, 1560, 1615, 1945, 3082, 3128, 4023 |
| PpsI | GAGTC | 8 cut(s) | 1000, 1006, 1560, 1615, 1945, 3082, 3128, 4023 |
| Ppu21I | YACGTR | 2 cut(s) | 1338, 2903 |
| PpuMI | RGGWCCY | 1 cut(s) | 3952 |
| PscI | ACATGT | 4 cut(s) | 528, 1983, 2937, 3562 |
| PsiI | TTATAA | 1 cut(s) | 1526 |
| Psp124BI | GAGCTC | 2 cut(s) | 93, 414 |
| Psp1406I | AACGTT | 1 cut(s) | 2932 |
| Psp5II | RGGWCCY | 1 cut(s) | 3952 |
| Psp6I | CCWGG | 9 cut(s) | 168, 183, 930, 947, 1005, 1308, 1739, 2612, 3798 |
| PspFI | CCCAGC | 1 cut(s) | 1777 |
| PspGI | CCWGG | 9 cut(s) | 168, 183, 930, 947, 1005, 1308, 1739, 2612, 3798 |
| PspN4I | GGNNCC | 5 cut(s) | 792, 942, 2226, 3538, 3940 |
| PspPI | GGNCC | 2 cut(s) | 3238, 3952 |
| PspPPI | RGGWCCY | 1 cut(s) | 3952 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3640, 3672 |
| PstI | CTGCAG | 4 cut(s) | 1141, 1759, 2011, 2397 |
| PsuI | RGATCY | 1 cut(s) | 3013 |
| PvuII | CAGCTG | 4 cut(s) | 1165, 2006, 3767, 4035 |
| RseI | CAYNNNNRTG | 2 cut(s) | 3246, 3716 |
| SacI | GAGCTC | 2 cut(s) | 93, 414 |
| SacII | CCGCGG | 2 cut(s) | 177, 3756 |
| SapI | GCTCTTC | 2 cut(s) | 402, 2807 |
| Sau96I | GGNCC | 2 cut(s) | 3238, 3952 |
| ScaI | AGTACT | 1 cut(s) | 855 |
| SchI | GAGTC | 8 cut(s) | 1001, 1007, 1560, 1616, 1946, 3082, 3128, 4023 |
| SduI | GDGCHC | 7 cut(s) | 93, 414, 551, 1343, 1370, 1398, 3723 |
| SexAI | ACCWGGT | 1 cut(s) | 3798 |
| SfaNI | GCATC | 4 cut(s) | 673, 3015, 3596, 3961 |
| SfcI | CTRYAG | 4 cut(s) | 1137, 1755, 2007, 2393 |
| Sfr274I | CTCGAG | 1 cut(s) | 3306 |
| Sfr303I | CCGCGG | 2 cut(s) | 177, 3756 |
| SgrBI | CCGCGG | 2 cut(s) | 177, 3756 |
| SinI | GGWCC | 1 cut(s) | 3952 |
| SlaI | CTCGAG | 1 cut(s) | 3306 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 3246, 3716 |
| SmlI | CTYRAG | 6 cut(s) | 1274, 1601, 2627, 2711, 3077, 3306 |
| SmoI | CTYRAG | 6 cut(s) | 1274, 1601, 2627, 2711, 3077, 3306 |
| SseBI | AGGCCT | 1 cut(s) | 3066 |
| SspI | AATATT | 2 cut(s) | 471, 3231 |
| SspMI | CTAG | 6 cut(s) | 347, 419, 1245, 1434, 3138, 3330 |
| SstI | GAGCTC | 2 cut(s) | 93, 414 |
| StuI | AGGCCT | 1 cut(s) | 3066 |
| StyI | CCWWGG | 5 cut(s) | 1038, 1221, 1531, 2958, 3093 |
| TaiI | ACGT | 4 cut(s) | 1340, 2905, 2935, 3987 |
| TaqII | GACCGA | 1 cut(s) | 2147 |
| TatI | WGTACW | 6 cut(s) | 853, 1207, 1460, 3420, 3427, 3433 |
| TauI | GCSGC | 3 cut(s) | 99, 176, 2729 |
| TfiI | GAWTC | 9 cut(s) | 605, 798, 986, 1142, 1429, 1823, 2029, 2120, 2126 |
| TseFI | GTSAC | 3 cut(s) | 1267, 3469, 3991 |
| Tsp45I | GTSAC | 3 cut(s) | 1267, 3469, 3991 |
| TspGWI | ACGGA | 4 cut(s) | 398, 523, 822, 1062 |
| Vha464I | CTTAAG | 1 cut(s) | 3077 |
| VneI | GTGCAC | 1 cut(s) | 3719 |
| VpaK11BI | GGWCC | 1 cut(s) | 3952 |
| XapI | RAATTY | 6 cut(s) | 976, 1596, 1675, 3453, 3550, 4014 |
| XceI | RCATGY | 5 cut(s) | 532, 1987, 2875, 2941, 3566 |
| XhoI | CTCGAG | 1 cut(s) | 3306 |
| XmiI | GTMKAC | 2 cut(s) | 2434, 2782 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3168 |
| XspI | CTAG | 6 cut(s) | 347, 419, 1245, 1434, 3138, 3330 |
| ZrmI | AGTACT | 1 cut(s) | 855 |