RING-type E3 ubiquitin transferase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380 |
| malus_domestica | MD02G1056600.v1.1 MD15G1011400.v1.1 MD15G1191200.v1.1 |
| prunus_persica | Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.7G226000_v2.0.a1 Prupe.7G226000_v2.0.a1 |
| pyrus_communis | pycom02g04580 pycom02g04590 pycom15g17120 |
| rosa_chinensis | RchiOBHm_Chr2g0091211 RchiOBHm_Chr6g0302931 RchiOBHm_Chr6g0302941 |
| rosa_laevigata | RLG00000011123 RLG00000016192 |
| rosa_multiflora | Rmu_sc0002270.1_g000015 Rmu_sc0033272.1_g000001 Rmu_ssc0000460.1_g000018 |
| rosa_roxburghii | Rroxscaffold_2G00150380 Rroxscaffold_7G00165160 |
| rosa_rugosa | Rorug02G0014500 Rorug06G0318200 Rorug06G0318300 Rorug06G0318300 |
| rosa_samantha | Rh2AG060300 Rh2BG059000 Rh2CG060800 Rh2DG059600 Rh6AG431800 Rh6BG470800 Rh6CG444200 Rh6DG431000 |
| rosa_wichuraiana | Rw2G004960 Rw6G037430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1511, 2330 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1814, 2554 |
| Acc65I | GGTACC | 1 cut(s) | 3923 |
| AccB1I | GGYRCC | 1 cut(s) | 3923 |
| AccBSI | CCGCTC | 1 cut(s) | 561 |
| AccI | GTMKAC | 2 cut(s) | 679, 2767 |
| AccII | CGCG | 1 cut(s) | 164 |
| AclI | AACGTT | 2 cut(s) | 480, 2917 |
| AcoI | YGGCCR | 5 cut(s) | 954, 1264, 3624, 3825, 3994 |
| AcsI | RAATTY | 8 cut(s) | 27, 113, 456, 964, 1095, 1581, 3288, 3535 |
| AcuI | CTGAAG | 8 cut(s) | 558, 602, 834, 1056, 2363, 2973, 3024, 3763 |
| AfaI | GTAC | 9 cut(s) | 387, 437, 740, 3270, 3414, 3420, 3570, 3643, 3925 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 163, 421, 2476, 2879, 4003, 4009 |
| AflII | CTTAAG | 1 cut(s) | 3062 |
| AflIII | ACRYGT | 4 cut(s) | 516, 1968, 3415, 3547 |
| AjnI | CCWGG | 3 cut(s) | 921, 935, 2597 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 170, 202 |
| Alw21I | GWGCWC | 5 cut(s) | 81, 402, 1352, 1380, 1764 |
| Alw26I | GTCTC | 7 cut(s) | 161, 873, 1253, 1767, 2507, 2540, 3335 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 974, 1163, 1342, 1795 |
| Ama87I | CYCGRG | 4 cut(s) | 74, 1763, 2006, 2898 |
| AoxI | GGCC | 9 cut(s) | 295, 954, 1264, 2416, 2623, 3049, 3624, 3825, 3994 |
| ApoI | RAATTY | 8 cut(s) | 27, 113, 456, 964, 1095, 1581, 3288, 3535 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 344, 376, 533, 565 |
| AseI | ATTAAT | 1 cut(s) | 1686 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 263, 2987, 3153 |
| Asp718I | GGTACC | 1 cut(s) | 3923 |
| AspLEI | GCGC | 1 cut(s) | 3128 |
| AspS9I | GGNCC | 2 cut(s) | 919, 2342 |
| AsuC2I | CCSGG | 6 cut(s) | 422, 1454, 2899, 2900, 3337, 4004 |
| AsuHPI | GGTGA | 2 cut(s) | 2566, 3448 |
| AsuII | TTCGAA | 3 cut(s) | 393, 1612, 3674 |
| AvaI | CYCGRG | 4 cut(s) | 74, 1763, 2006, 2898 |
| AvaII | GGWCC | 2 cut(s) | 919, 2342 |
| BalI | TGGCCA | 2 cut(s) | 3626, 3827 |
| BamHI | GGATCC | 1 cut(s) | 3521 |
| BanI | GGYRCC | 1 cut(s) | 3923 |
| BanII | GRGCYC | 3 cut(s) | 81, 402, 1764 |
| BbsI | GAAGAC | 1 cut(s) | 2961 |
| Bbv12I | GWGCWC | 5 cut(s) | 81, 402, 1352, 1380, 1764 |
| BccI | CCATC | 8 cut(s) | 191, 320, 1523, 1898, 2162, 3227, 3737, 3986 |
| BceAI | ACGGC | 3 cut(s) | 310, 3437, 3737 |
| BciT130I | CCWGG | 3 cut(s) | 923, 937, 2599 |
| BciVI | GTATCC | 1 cut(s) | 64 |
| BclI | TGATCA | 1 cut(s) | 727 |
| BcnI | CCSGG | 6 cut(s) | 422, 1454, 2899, 2900, 3337, 4004 |
| BcoDI | GTCTC | 7 cut(s) | 161, 873, 1253, 1767, 2507, 2540, 3335 |
| BfaI | CTAG | 6 cut(s) | 173, 407, 1227, 3123, 3315, 3566 |
| BfmI | CTRYAG | 4 cut(s) | 1122, 1343, 1740, 1992 |
| BfrI | CTTAAG | 1 cut(s) | 3062 |
| BfuI | GTATCC | 1 cut(s) | 64 |
| BlpI | GCTNAGC | 1 cut(s) | 4016 |
| Bme1390I | CCNGG | 9 cut(s) | 422, 923, 937, 1454, 2599, 2899, 2900, 3337, 4004 |
| Bme18I | GGWCC | 2 cut(s) | 919, 2342 |
| BmeT110I | CYCGRG | 4 cut(s) | 74, 1763, 2006, 2898 |
| BmgT120I | GGNCC | 2 cut(s) | 919, 2342 |
| BmiI | GGNNCC | 4 cut(s) | 774, 2211, 3523, 3925 |
| BmrFI | CCNGG | 9 cut(s) | 422, 923, 937, 1454, 2599, 2899, 2900, 3337, 4004 |
| BmrI | ACTGGG | 1 cut(s) | 1460 |
| BmsI | GCATC | 4 cut(s) | 661, 833, 3581, 3946 |
| BmuI | ACTGGG | 1 cut(s) | 1460 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2400 |
| BpiI | GAAGAC | 1 cut(s) | 2961 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 986, 1018, 3058, 3090 |
| BpmI | CTGGAG | 5 cut(s) | 611, 958, 1013, 1125, 2700 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4016 |
| Bpu14I | TTCGAA | 3 cut(s) | 393, 1612, 3674 |
| BpuEI | CTTGAG | 4 cut(s) | 230, 1277, 1571, 2717 |
| BpuMI | CCSGG | 6 cut(s) | 422, 1454, 2899, 2900, 3337, 4004 |
| Bsa29I | ATCGAT | 1 cut(s) | 2927 |
| BsaAI | YACGTR | 2 cut(s) | 2888, 3418 |
| BsaI | GGTCTC | 2 cut(s) | 161, 1253 |
| BsaJI | CCNNGG | 7 cut(s) | 162, 1203, 2598, 2898, 2943, 3078, 3336 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 163, 421, 2476, 2879, 4003, 4009 |
| Bse118I | RCCGGY | 1 cut(s) | 1262 |
| Bse1I | ACTGG | 7 cut(s) | 1466, 1605, 1725, 2398, 3729, 3925, 3985 |
| Bse3DI | GCAATG | 2 cut(s) | 2037, 3400 |
| BseBI | CCWGG | 3 cut(s) | 923, 937, 2599 |
| BseCI | ATCGAT | 1 cut(s) | 2927 |
| BseDI | CCNNGG | 7 cut(s) | 162, 1203, 2598, 2898, 2943, 3078, 3336 |
| BseGI | GGATG | 6 cut(s) | 1890, 2173, 2341, 2991, 3596, 3748 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 163, 421, 2476, 2879, 4003, 4009 |
| BseMI | GCAATG | 2 cut(s) | 2037, 3400 |
| BseNI | ACTGG | 7 cut(s) | 1466, 1605, 1725, 2398, 3729, 3925, 3985 |
| BsgI | GTGCAG | 3 cut(s) | 1443, 1554, 2197 |
| Bsh1236I | CGCG | 1 cut(s) | 164 |
| BshFI | GGCC | 9 cut(s) | 297, 956, 1266, 2418, 2625, 3051, 3626, 3827, 3996 |
| BshNI | GGYRCC | 1 cut(s) | 3923 |
| BshVI | ATCGAT | 1 cut(s) | 2927 |
| BsiHKAI | GWGCWC | 5 cut(s) | 81, 402, 1352, 1380, 1764 |
| BsiHKCI | CYCGRG | 4 cut(s) | 74, 1763, 2006, 2898 |
| BsiSI | CCGG | 6 cut(s) | 422, 1263, 1454, 2899, 3336, 4003 |
| BslFI | GGGAC | 3 cut(s) | 579, 1203, 3896 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 163, 421, 2476, 2879, 4003, 4009 |
| BsmAI | GTCTC | 7 cut(s) | 161, 873, 1253, 1767, 2507, 2540, 3335 |
| BsmFI | GGGAC | 3 cut(s) | 579, 1203, 3896 |
| BsmI | GAATGC | 3 cut(s) | 1885, 3226, 3772 |
| BsnI | GGCC | 9 cut(s) | 297, 956, 1266, 2418, 2625, 3051, 3626, 3827, 3996 |
| Bso31I | GGTCTC | 2 cut(s) | 161, 1253 |
| BsoBI | CYCGRG | 4 cut(s) | 74, 1763, 2006, 2898 |
| Bsp119I | TTCGAA | 3 cut(s) | 393, 1612, 3674 |
| Bsp1286I | GDGCHC | 5 cut(s) | 81, 402, 1352, 1380, 1764 |
| Bsp1407I | TGTACA | 1 cut(s) | 3412 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4016 |
| BspANI | GGCC | 9 cut(s) | 297, 956, 1266, 2418, 2625, 3051, 3626, 3827, 3996 |
| BspDI | ATCGAT | 1 cut(s) | 2927 |
| BspFNI | CGCG | 1 cut(s) | 164 |
| BspLI | GGNNCC | 4 cut(s) | 774, 2211, 3523, 3925 |
| BspMAI | CTGCAG | 4 cut(s) | 1126, 1347, 1744, 1996 |
| BspQI | GCTCTTC | 2 cut(s) | 390, 2792 |
| BspT104I | TTCGAA | 3 cut(s) | 393, 1612, 3674 |
| BspT107I | GGYRCC | 1 cut(s) | 3923 |
| BspTI | CTTAAG | 1 cut(s) | 3062 |
| BspTNI | GGTCTC | 2 cut(s) | 161, 1253 |
| BsrBI | CCGCTC | 1 cut(s) | 561 |
| BsrDI | GCAATG | 2 cut(s) | 2037, 3400 |
| BsrFI | RCCGGY | 1 cut(s) | 1262 |
| BsrGI | TGTACA | 1 cut(s) | 3412 |
| BsrI | ACTGG | 7 cut(s) | 1466, 1605, 1725, 2398, 3729, 3925, 3985 |
| BssAI | RCCGGY | 1 cut(s) | 1262 |
| BssECI | CCNNGG | 7 cut(s) | 162, 1203, 2598, 2898, 2943, 3078, 3336 |
| BssT1I | CCWWGG | 3 cut(s) | 1203, 2943, 3078 |
| Bst2UI | CCWGG | 3 cut(s) | 923, 937, 2599 |
| Bst6I | CTCTTC | 7 cut(s) | 274, 390, 704, 2115, 2469, 2697, 2792 |
| BstAFI | CTTAAG | 1 cut(s) | 3062 |
| BstAUI | TGTACA | 1 cut(s) | 3412 |
| BstBAI | YACGTR | 2 cut(s) | 2888, 3418 |
| BstBI | TTCGAA | 3 cut(s) | 393, 1612, 3674 |
| BstDSI | CCRYGG | 1 cut(s) | 162 |
| BstF5I | GGATG | 6 cut(s) | 1890, 2173, 2341, 2991, 3596, 3748 |
| BstFNI | CGCG | 1 cut(s) | 164 |
| BstHHI | GCGC | 1 cut(s) | 3128 |
| BstMAI | GTCTC | 7 cut(s) | 161, 873, 1253, 1767, 2507, 2540, 3335 |
| BstNI | CCWGG | 3 cut(s) | 923, 937, 2599 |
| BstNSI | RCATGY | 6 cut(s) | 520, 1323, 1972, 2829, 2860, 3551 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2400 |
| BstSCI | CCNGG | 9 cut(s) | 420, 921, 935, 1452, 2597, 2897, 2898, 3335, 4002 |
| BstSFI | CTRYAG | 4 cut(s) | 1122, 1343, 1740, 1992 |
| BstUI | CGCG | 1 cut(s) | 164 |
| BstV2I | GAAGAC | 1 cut(s) | 2961 |
| BstX2I | RGATCY | 3 cut(s) | 2142, 3068, 3521 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2762, 3079, 3602 |
| BstYI | RGATCY | 3 cut(s) | 2142, 3068, 3521 |
| Bsu15I | ATCGAT | 1 cut(s) | 2927 |
| BsuI | GTATCC | 1 cut(s) | 64 |
| BsuRI | GGCC | 9 cut(s) | 297, 956, 1266, 2418, 2625, 3051, 3626, 3827, 3996 |
| BsuTUI | ATCGAT | 1 cut(s) | 2927 |
| BtgI | CCRYGG | 1 cut(s) | 162 |
| BtsCI | GGATG | 6 cut(s) | 1890, 2173, 2341, 2991, 3596, 3748 |
| BtsI | GCAGTG | 3 cut(s) | 2001, 2032, 3175 |
| CaiI | CAGNNNCTG | 4 cut(s) | 974, 1163, 1342, 1795 |
| CfoI | GCGC | 1 cut(s) | 3128 |
| Cfr10I | RCCGGY | 1 cut(s) | 1262 |
| Cfr13I | GGNCC | 2 cut(s) | 919, 2342 |
| Cfr42I | CCGCGG | 1 cut(s) | 165 |
| Cfr9I | CCCGGG | 1 cut(s) | 2898 |
| ClaI | ATCGAT | 1 cut(s) | 2927 |
| CseI | GACGC | 1 cut(s) | 939 |
| Csp6I | GTAC | 9 cut(s) | 386, 436, 739, 3269, 3413, 3419, 3569, 3642, 3924 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1437, 1472 |
| CviQI | GTAC | 9 cut(s) | 386, 436, 739, 3269, 3413, 3419, 3569, 3642, 3924 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1814, 2554 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1814, 2554 |
| EaeI | YGGCCR | 5 cut(s) | 954, 1264, 3624, 3825, 3994 |
| Eam1104I | CTCTTC | 7 cut(s) | 274, 390, 704, 2115, 2469, 2697, 2792 |
| EarI | CTCTTC | 7 cut(s) | 274, 390, 704, 2115, 2469, 2697, 2792 |
| EciI | GGCGGA | 3 cut(s) | 23, 71, 95 |
| Ecl136II | GAGCTC | 3 cut(s) | 79, 400, 1762 |
| Eco130I | CCWWGG | 3 cut(s) | 1203, 2943, 3078 |
| Eco147I | AGGCCT | 1 cut(s) | 3051 |
| Eco24I | GRGCYC | 3 cut(s) | 81, 402, 1764 |
| Eco31I | GGTCTC | 2 cut(s) | 161, 1253 |
| Eco32I | GATATC | 1 cut(s) | 3040 |
| Eco47I | GGWCC | 2 cut(s) | 919, 2342 |
| Eco53kI | GAGCTC | 3 cut(s) | 79, 400, 1762 |
| Eco57I | CTGAAG | 8 cut(s) | 558, 602, 834, 1056, 2363, 2973, 3024, 3763 |
| Eco88I | CYCGRG | 4 cut(s) | 74, 1763, 2006, 2898 |
| EcoICRI | GAGCTC | 3 cut(s) | 79, 400, 1762 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2342 |
| EcoRII | CCWGG | 3 cut(s) | 921, 935, 2597 |
| EcoRV | GATATC | 1 cut(s) | 3040 |
| EcoT14I | CCWWGG | 3 cut(s) | 1203, 2943, 3078 |
| EcoT38I | GRGCYC | 3 cut(s) | 81, 402, 1764 |
| ErhI | CCWWGG | 3 cut(s) | 1203, 2943, 3078 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 239, 271, 1509, 1541 |
| FaqI | GGGAC | 3 cut(s) | 579, 1203, 3896 |
| FauI | CCCGC | 3 cut(s) | 208, 554, 1340 |
| FauNDI | CATATG | 1 cut(s) | 1273 |
| FbaI | TGATCA | 1 cut(s) | 727 |
| FblI | GTMKAC | 2 cut(s) | 679, 2767 |
| FokI | GGATG | 6 cut(s) | 1877, 2180, 2348, 2978, 3603, 3755 |
| FriOI | GRGCYC | 3 cut(s) | 81, 402, 1764 |
| FspBI | CTAG | 6 cut(s) | 173, 407, 1227, 3123, 3315, 3566 |
| GlaI | GCGC | 1 cut(s) | 3127 |
| GsuI | CTGGAG | 5 cut(s) | 611, 958, 1013, 1125, 2700 |
| HaeIII | GGCC | 9 cut(s) | 297, 956, 1266, 2418, 2625, 3051, 3626, 3827, 3996 |
| HapII | CCGG | 6 cut(s) | 422, 1263, 1454, 2899, 3336, 4003 |
| HgaI | GACGC | 1 cut(s) | 939 |
| HhaI | GCGC | 1 cut(s) | 3128 |
| Hin6I | GCGC | 1 cut(s) | 3126 |
| HinP1I | GCGC | 1 cut(s) | 3126 |
| HincII | GTYRAC | 4 cut(s) | 474, 680, 1462, 1807 |
| HindII | GTYRAC | 4 cut(s) | 474, 680, 1462, 1807 |
| HpaII | CCGG | 6 cut(s) | 422, 1263, 1454, 2899, 3336, 4003 |
| HphI | GGTGA | 2 cut(s) | 2566, 3448 |
| Hpy99I | CGWCG | 2 cut(s) | 500, 955 |
| HpyCH4IV | ACGT | 8 cut(s) | 467, 480, 1384, 2487, 2617, 2887, 2917, 3417 |
| HpySE526I | ACGT | 8 cut(s) | 467, 480, 1384, 2487, 2617, 2887, 2917, 3417 |
| HspAI | GCGC | 1 cut(s) | 3126 |
| KpnI | GGTACC | 1 cut(s) | 3927 |
| Ksp22I | TGATCA | 1 cut(s) | 727 |
| KspI | CCGCGG | 1 cut(s) | 165 |
| LguI | GCTCTTC | 2 cut(s) | 390, 2792 |
| LmnI | GCTCC | 6 cut(s) | 84, 243, 586, 1069, 2215, 3746 |
| LweI | GCATC | 4 cut(s) | 661, 833, 3581, 3946 |
| MaeI | CTAG | 6 cut(s) | 173, 407, 1227, 3123, 3315, 3566 |
| MaeII | ACGT | 8 cut(s) | 467, 480, 1384, 2487, 2617, 2887, 2917, 3417 |
| MaeIII | GTNAC | 7 cut(s) | 1249, 1828, 2636, 3019, 3310, 3454, 3976 |
| MbiI | CCGCTC | 1 cut(s) | 561 |
| MfeI | CAATTG | 2 cut(s) | 2049, 3928 |
| MflI | RGATCY | 3 cut(s) | 2142, 3068, 3521 |
| MhlI | GDGCHC | 5 cut(s) | 81, 402, 1352, 1380, 1764 |
| MlsI | TGGCCA | 2 cut(s) | 3626, 3827 |
| MluNI | TGGCCA | 2 cut(s) | 3626, 3827 |
| MlyI | GAGTC | 8 cut(s) | 1136, 1154, 1601, 1802, 1825, 1916, 3113, 3337 |
| MmeI | TCCRAC | 4 cut(s) | 537, 924, 1519, 3769 |
| Mox20I | TGGCCA | 2 cut(s) | 3626, 3827 |
| MroXI | GAANNNNTTC | 3 cut(s) | 263, 2987, 3153 |
| MscI | TGGCCA | 2 cut(s) | 3626, 3827 |
| MslI | CAYNNNNRTG | 4 cut(s) | 701, 3231, 3420, 3600 |
| Msp20I | TGGCCA | 2 cut(s) | 3626, 3827 |
| MspA1I | CMGCKG | 3 cut(s) | 164, 1739, 1991 |
| MspCI | CTTAAG | 1 cut(s) | 3062 |
| MspI | CCGG | 6 cut(s) | 422, 1263, 1454, 2899, 3336, 4003 |
| MspR9I | CCNGG | 9 cut(s) | 422, 923, 937, 1454, 2599, 2899, 2900, 3337, 4004 |
| MunI | CAATTG | 2 cut(s) | 2049, 3928 |
| Mva1269I | GAATGC | 3 cut(s) | 1885, 3226, 3772 |
| MvaI | CCWGG | 3 cut(s) | 923, 937, 2599 |
| MvnI | CGCG | 1 cut(s) | 164 |
| NciI | CCSGG | 6 cut(s) | 422, 1454, 2899, 2900, 3337, 4004 |
| NdeI | CATATG | 1 cut(s) | 1273 |
| NlaIV | GGNNCC | 4 cut(s) | 774, 2211, 3523, 3925 |
| NmeAIII | GCCGAG | 1 cut(s) | 2475 |
| NmuCI | GTSAC | 4 cut(s) | 1249, 1828, 3454, 3976 |
| NspI | RCATGY | 6 cut(s) | 520, 1323, 1972, 2829, 2860, 3551 |
| NspV | TTCGAA | 3 cut(s) | 393, 1612, 3674 |
| PceI | AGGCCT | 1 cut(s) | 3051 |
| PciI | ACATGT | 3 cut(s) | 516, 1968, 3547 |
| PciSI | GCTCTTC | 2 cut(s) | 390, 2792 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 369, 1618, 1824 |
| PctI | GAATGC | 3 cut(s) | 1885, 3226, 3772 |
| PdmI | GAANNNNTTC | 3 cut(s) | 263, 2987, 3153 |
| PfoI | TCCNGGA | 2 cut(s) | 921, 935 |
| PleI | GAGTC | 8 cut(s) | 1135, 1154, 1600, 1802, 1825, 1916, 3113, 3337 |
| PpsI | GAGTC | 8 cut(s) | 1135, 1154, 1600, 1802, 1825, 1916, 3113, 3337 |
| Ppu21I | YACGTR | 2 cut(s) | 2888, 3418 |
| PpuMI | RGGWCCY | 1 cut(s) | 2342 |
| PscI | ACATGT | 3 cut(s) | 516, 1968, 3547 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2400 |
| PshBI | ATTAAT | 1 cut(s) | 1686 |
| PsiI | TTATAA | 2 cut(s) | 1511, 2330 |
| Psp124BI | GAGCTC | 3 cut(s) | 81, 402, 1764 |
| Psp1406I | AACGTT | 2 cut(s) | 480, 2917 |
| Psp5II | RGGWCCY | 1 cut(s) | 2342 |
| Psp6I | CCWGG | 3 cut(s) | 921, 935, 2597 |
| PspGI | CCWGG | 3 cut(s) | 921, 935, 2597 |
| PspN4I | GGNNCC | 4 cut(s) | 774, 2211, 3523, 3925 |
| PspPI | GGNCC | 2 cut(s) | 919, 2342 |
| PspPPI | RGGWCCY | 1 cut(s) | 2342 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3625, 3657 |
| PstI | CTGCAG | 4 cut(s) | 1126, 1347, 1744, 1996 |
| PstNI | CAGNNNCTG | 4 cut(s) | 974, 1163, 1342, 1795 |
| PsuI | RGATCY | 3 cut(s) | 2142, 3068, 3521 |
| PvuII | CAGCTG | 2 cut(s) | 1739, 1991 |
| RsaI | GTAC | 9 cut(s) | 387, 437, 740, 3270, 3414, 3420, 3570, 3643, 3925 |
| RsaNI | GTAC | 9 cut(s) | 386, 436, 739, 3269, 3413, 3419, 3569, 3642, 3924 |
| RseI | CAYNNNNRTG | 4 cut(s) | 701, 3231, 3420, 3600 |
| SacI | GAGCTC | 3 cut(s) | 81, 402, 1764 |
| SacII | CCGCGG | 1 cut(s) | 165 |
| SalI | GTCGAC | 1 cut(s) | 678 |
| SapI | GCTCTTC | 2 cut(s) | 390, 2792 |
| Sau96I | GGNCC | 2 cut(s) | 919, 2342 |
| SchI | GAGTC | 8 cut(s) | 1136, 1154, 1601, 1802, 1825, 1916, 3113, 3337 |
| ScrFI | CCNGG | 9 cut(s) | 422, 923, 937, 1454, 2599, 2899, 2900, 3337, 4004 |
| SduI | GDGCHC | 5 cut(s) | 81, 402, 1352, 1380, 1764 |
| SfaNI | GCATC | 4 cut(s) | 661, 833, 3581, 3946 |
| SfcI | CTRYAG | 4 cut(s) | 1122, 1343, 1740, 1992 |
| Sfr303I | CCGCGG | 1 cut(s) | 165 |
| SfuI | TTCGAA | 3 cut(s) | 393, 1612, 3674 |
| SgrBI | CCGCGG | 1 cut(s) | 165 |
| SinI | GGWCC | 2 cut(s) | 919, 2342 |
| SmaI | CCCGGG | 1 cut(s) | 2900 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 701, 3231, 3420, 3600 |
| SmlI | CTYRAG | 5 cut(s) | 245, 1256, 1586, 2696, 3062 |
| SmoI | CTYRAG | 5 cut(s) | 245, 1256, 1586, 2696, 3062 |
| SseBI | AGGCCT | 1 cut(s) | 3051 |
| SspI | AATATT | 1 cut(s) | 3216 |
| SspMI | CTAG | 6 cut(s) | 173, 407, 1227, 3123, 3315, 3566 |
| SstI | GAGCTC | 3 cut(s) | 81, 402, 1764 |
| StuI | AGGCCT | 1 cut(s) | 3051 |
| StyD4I | CCNGG | 9 cut(s) | 420, 921, 935, 1452, 2597, 2897, 2898, 3335, 4002 |
| StyI | CCWWGG | 3 cut(s) | 1203, 2943, 3078 |
| TaiI | ACGT | 8 cut(s) | 470, 483, 1387, 2490, 2620, 2890, 2920, 3420 |
| TatI | WGTACW | 3 cut(s) | 385, 3412, 3568 |
| TauI | GCSGC | 8 cut(s) | 47, 87, 111, 140, 164, 309, 323, 2714 |
| TseFI | GTSAC | 4 cut(s) | 1249, 1828, 3454, 3976 |
| Tsp45I | GTSAC | 4 cut(s) | 1249, 1828, 3454, 3976 |
| TspGWI | ACGGA | 2 cut(s) | 756, 804 |
| TspMI | CCCGGG | 1 cut(s) | 2898 |
| Vha464I | CTTAAG | 1 cut(s) | 3062 |
| VpaK11BI | GGWCC | 2 cut(s) | 919, 2342 |
| VspI | ATTAAT | 1 cut(s) | 1686 |
| XapI | RAATTY | 8 cut(s) | 27, 113, 456, 964, 1095, 1581, 3288, 3535 |
| XceI | RCATGY | 6 cut(s) | 520, 1323, 1972, 2829, 2860, 3551 |
| XmaI | CCCGGG | 1 cut(s) | 2898 |
| XmiI | GTMKAC | 2 cut(s) | 679, 2767 |
| XmnI | GAANNNNTTC | 3 cut(s) | 263, 2987, 3153 |
| XspI | CTAG | 6 cut(s) | 173, 407, 1227, 3123, 3315, 3566 |