Rorug02G0014500

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001838
Physical Location & Seq
Forward (+)
1227313 .. 1237617
10305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0014500.1

Sequence Viewer

Length: 1491 bp
ATGGCGACTCAGAAACTCACAGACTATGAGCGCAAGAGGCTCGAGAACATTCGCCGGAACGAGGAATTGATGGCTTCCCTGAAGCTCCAATCCATGGCCACCCAACTCTCTGCCTCAACCAAACGCCCCAGGGTTGAGACCAAATCGTACAAGGTCAATTCGGAGAAGCAGCCCAAGACCCAGGACCCAACTGTTATCAGGCGTTCTCTACGCACCAGAGGATTACCACCCGATGCGAAAGGACTAGGTGGTGATGGTGATGATGACTCTGTGGTGAAGACCCTAGAATCTGTAGACCCTAAGGCATCGGCTCGCAAATTGGGTCCTCTTAGTATGAGAGATGTGTATAGCGGAGTATCGGATAGAGCTCTGATTGAGGCCATTTTGGGTGTTGAGAAGAAACCCCAATTGGGTTTGGAAGTTAACGGTGAATTTGGGGGTTGCAAGGAGGAGAGATCAAGTGGTGCATTTACCTTAGTTGGTGGGGTTAGTTGTGATTTGAGTAAGAAATTAGGAGGAGCTGAGAGTGATTTGAAGGTGGAATCTTTGACTCTGAATGAGGAGAATGTAGCCCGGGTTGTGCCGGGGAATGTCATGAATGTGAGGTTTTTTCCAAGTACTAGTTTGAGAATGGTTGTGGTTGGGGATATGGCTGGGAATGTTGGATTTTGGAATGTTGATTCTAAGGAAGGGGAGGAAGGTGGGATCTGTATGTATCGTCCACATTCTGGTCCCATTTCGGGGATTTCTATTCACCAAGATTGCATGTCAAAGATCTTTACTAGTTGCTGTGATGGATTTATCCGATTGATGGATGCTGAGAAAGAGGTGTTTGATCTAGTATATTCAACTGGTAAGACTATATATTCTCTCGGTCAACAGTCAAACAATGCAAAGTGTTTATACTTCGCTGAGGGTCGTGGAGGTGTAAGTATGTGGGACGAGAGAACAGGAAACATCTCAGCCCAGTGGAGTCCGCATGATGATAGAATCAATTCCATAGATTTTAACTCAGAGAACTCAAACATCATCACCACTAGTTCAACAGATGGAACTGCCTGCATTTGGGATTTGAGATGTGTTGATGCAGATAAATTCAAAAGTTTGAAAACAATTGGCCACAAAAGGGCTGTGTATTCTGCCTACTTCTCGCCTTCTGGAAGGTCGCTAGTGACGACAAGCCTTGATGGCACAGTTGGTATATCAAGTGGAGTTAATTTTGAGGACATATCAATGATATCCCAAGATAATAAAGGCGGATGGATTCCTAAGTTCAACGCAATATGGGGCTGGGATGATGCATATGTCTTCATCGGAAATAAGAAGAGAGGAATCGATGTTATCTCCCACTTTCAAAGGAGAGCGGTTTTCACTTTAAAGAGCCCATATATGTCTGCAGTTCCGTATAGATTGGCTGCTCACCCTTATAATGTTGGGATGCTAGCAGGAGCAACAGGTAGAGGCCTAGTTAATGTATGGACATTGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box WD40

Protein Analysis

496

Amino Acids

54.27

Weight (kDa)

8.42

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Gbeta PF25391 182 - 404 1.2e-07 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 197 - 361 1e-12 Prp19 WD40 domain
WDR55 PF24796 197 - 408 6.5e-14 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 211 - 397 1.2e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 221 - 475 5e-16 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 285 - 411 1.1e-11 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 286 - 397 3.7e-07 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st PF25173 294 - 399 9.9e-11 WDR3 first beta-propeller domain
EIF3I PF24805 295 - 387 9e-07 EIF3I
Beta-prop_EIPR1 PF23609 304 - 397 2.9e-07 EIPR1 beta-propeller
Beta-prop_WDR5 PF25175 310 - 406 4.8e-13 WDR5 beta-propeller domain
Beta-prop_RIG_2nd PF23775 320 - 393 7.3e-07 RIG second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1428
AccB7I CCANNNNNTGG 2 cut(s) 94, 728
AccBSI CCGCTC 1 cut(s) 1364
AccI GTMKAC 1 cut(s) 294
AciI CCGC 4 cut(s) 351, 977, 1257, 1364
AclWI GGATC 1 cut(s) 713
AcoI YGGCCR 2 cut(s) 96, 1117
AcsI RAATTY 2 cut(s) 431, 1094
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 2 cut(s) 149, 619
AfiI CCNNNNNNNGG 9 cut(s) 61, 94, 410, 728, 740, 741, 811, 1065, 1126
AgsI TTSAA 7 cut(s) 535, 849, 1044, 1099, 1108, 1276, 1355
AhlI ACTAGT 3 cut(s) 620, 782, 1037
AjnI CCWGG 2 cut(s) 128, 180
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 3 cut(s) 85, 368, 521
AluI AGCT 3 cut(s) 85, 368, 521
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 713
Ama87I CYCGRG 2 cut(s) 41, 573
AoxI GGCC 4 cut(s) 96, 378, 1117, 1462
ApeKI GCWGC 2 cut(s) 169, 1415
ApoI RAATTY 2 cut(s) 431, 1094
Asp700I GAANNNNTTC 1 cut(s) 994
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 3 cut(s) 184, 323, 731
AsuC2I CCSGG 3 cut(s) 574, 575, 585
AsuHPI GGTGA 7 cut(s) 263, 269, 286, 440, 746, 1024, 1412
AsuNHI GCTAGC 1 cut(s) 1441
AvaI CYCGRG 2 cut(s) 41, 573
AvaII GGWCC 3 cut(s) 184, 323, 731
AxyI CCTNAGG 1 cut(s) 300
BalI TGGCCA 2 cut(s) 98, 1119
BanII GRGCYC 2 cut(s) 370, 1385
BbsI GAAGAC 2 cut(s) 284, 1300
Bbv12I GWGCWC 1 cut(s) 370
BbvCI CCTCAGC 1 cut(s) 912
BbvI GCAGC 2 cut(s) 181, 1402
BccI CCATC 7 cut(s) 64, 248, 788, 805, 1043, 1181, 1254
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 2 cut(s) 130, 182
BcnI CCSGG 3 cut(s) 574, 575, 585
BcoDI GTCTC 1 cut(s) 131
BcuI ACTAGT 3 cut(s) 620, 782, 1037
BfaI CTAG 9 cut(s) 245, 284, 621, 783, 839, 1038, 1169, 1442, 1466
BfmI CTRYAG 2 cut(s) 291, 1395
BglI GCCNNNNNGGC 1 cut(s) 1188
BglII AGATCT 1 cut(s) 774
BisI GCNGC 2 cut(s) 170, 1416
BlsI GCNGC 2 cut(s) 171, 1417
BmcAI AGTACT 1 cut(s) 619
Bme1390I CCNGG 5 cut(s) 130, 182, 574, 575, 585
Bme18I GGWCC 3 cut(s) 184, 323, 731
BmeT110I CYCGRG 2 cut(s) 41, 573
BmgT120I GGNCC 3 cut(s) 184, 323, 731
BmiI GGNNCC 3 cut(s) 186, 324, 733
BmrFI CCNGG 5 cut(s) 130, 182, 574, 575, 585
BmrI ACTGGG 1 cut(s) 961
BmsI GCATC 6 cut(s) 223, 314, 805, 1075, 1288, 1428
BmtI GCTAGC 1 cut(s) 1445
BmuI ACTGGG 1 cut(s) 961
BpiI GAAGAC 2 cut(s) 284, 1300
Bpu10I CCTNAGC 1 cut(s) 912
BpuMI CCSGG 3 cut(s) 574, 575, 585
Bsa29I ATCGAT 1 cut(s) 1335
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 6 cut(s) 93, 128, 129, 180, 573, 584
Bsc4I CCNNNNNNNGG 9 cut(s) 61, 94, 410, 728, 740, 741, 811, 1065, 1126
Bse1I ACTGG 2 cut(s) 856, 967
Bse21I CCTNAGG 1 cut(s) 300
BseBI CCWGG 2 cut(s) 130, 182
BseCI ATCGAT 1 cut(s) 1335
BseDI CCNNGG 6 cut(s) 93, 128, 129, 180, 573, 584
BseGI GGATG 4 cut(s) 820, 1265, 1300, 1443
BseLI CCNNNNNNNGG 9 cut(s) 61, 94, 410, 728, 740, 741, 811, 1065, 1126
BseMII CTCAG 6 cut(s) 23, 513, 810, 903, 975, 1026
BseNI ACTGG 2 cut(s) 856, 967
BseRI GAGGAG 3 cut(s) 464, 531, 575
BseXI GCAGC 2 cut(s) 181, 1402
BseYI CCCAGC 2 cut(s) 653, 1290
BshFI GGCC 4 cut(s) 98, 380, 1119, 1464
BshVI ATCGAT 1 cut(s) 1335
BsiHKAI GWGCWC 1 cut(s) 370
BsiHKCI CYCGRG 2 cut(s) 41, 573
BsiSI CCGG 3 cut(s) 55, 574, 584
BslFI GGGAC 2 cut(s) 717, 953
BslI CCNNNNNNNGG 9 cut(s) 61, 94, 410, 728, 740, 741, 811, 1065, 1126
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 2 cut(s) 717, 953
BsnI GGCC 4 cut(s) 98, 380, 1119, 1464
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 2 cut(s) 41, 573
Bsp1286I GDGCHC 2 cut(s) 370, 1385
Bsp143I GATC 4 cut(s) 455, 705, 774, 835
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 4 cut(s) 351, 977, 1257, 1364
BspANI GGCC 4 cut(s) 98, 380, 1119, 1464
BspCNI CTCAG 6 cut(s) 22, 514, 811, 904, 974, 1025
BspDI ATCGAT 1 cut(s) 1335
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 3 cut(s) 186, 324, 733
BspMAI CTGCAG 1 cut(s) 1399
BspOI GCTAGC 1 cut(s) 1445
BspPI GGATC 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 1364
BsrI ACTGG 2 cut(s) 856, 967
BssECI CCNNGG 6 cut(s) 93, 128, 129, 180, 573, 584
BssMI GATC 4 cut(s) 455, 705, 774, 835
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 130, 182
Bst4CI ACNGT 4 cut(s) 193, 428, 882, 1195
Bst6I CTCTTC 1 cut(s) 1319
BstC8I GCNNGC 3 cut(s) 313, 1060, 1443
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 4 cut(s) 820, 1265, 1300, 1443
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 4 cut(s) 458, 708, 777, 838
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 4 cut(s) 455, 705, 774, 835
BstMWI GCNNNNNNNGC 2 cut(s) 37, 1188
BstNI CCWGG 2 cut(s) 130, 182
BstNSI RCATGY 1 cut(s) 769
BstSCI CCNGG 5 cut(s) 128, 180, 572, 573, 583
BstSFI CTRYAG 2 cut(s) 291, 1395
BstV1I GCAGC 2 cut(s) 181, 1402
BstV2I GAAGAC 2 cut(s) 284, 1300
BstX2I RGATCY 2 cut(s) 705, 774
BstYI RGATCY 2 cut(s) 705, 774
Bsu15I ATCGAT 1 cut(s) 1335
Bsu36I CCTNAGG 1 cut(s) 300
BsuRI GGCC 4 cut(s) 98, 380, 1119, 1464
BsuTUI ATCGAT 1 cut(s) 1335
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 4 cut(s) 820, 1265, 1300, 1443
BtsIMutI CAGTG 1 cut(s) 974
Cac8I GCNNGC 3 cut(s) 313, 1060, 1443
CciI TCATGA 1 cut(s) 594
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 3 cut(s) 184, 323, 731
Cfr9I CCCGGG 1 cut(s) 573
ClaI ATCGAT 1 cut(s) 1335
Csp6I GTAC 2 cut(s) 148, 618
CviAII CATG 4 cut(s) 94, 595, 766, 980
CviQI GTAC 2 cut(s) 148, 618
DpnI GATC 4 cut(s) 457, 707, 776, 837
DpnII GATC 4 cut(s) 455, 705, 774, 835
DraI TTTAAA 1 cut(s) 1377
EaeI YGGCCR 2 cut(s) 96, 1117
Eam1104I CTCTTC 1 cut(s) 1319
EarI CTCTTC 1 cut(s) 1319
EciI GGCGGA 1 cut(s) 1272
Ecl136II GAGCTC 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 1464
Eco24I GRGCYC 2 cut(s) 370, 1385
Eco31I GGTCTC 1 cut(s) 131
Eco32I GATATC 1 cut(s) 1239
Eco47I GGWCC 3 cut(s) 184, 323, 731
Eco53kI GAGCTC 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 101
Eco81I CCTNAGG 1 cut(s) 300
Eco88I CYCGRG 2 cut(s) 41, 573
EcoICRI GAGCTC 1 cut(s) 368
EcoO109I RGGNCCY 2 cut(s) 184, 323
EcoRII CCWGG 2 cut(s) 128, 180
EcoRV GATATC 1 cut(s) 1239
EcoT14I CCWWGG 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 1303
EcoT38I GRGCYC 2 cut(s) 370, 1385
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 4 cut(s) 97, 598, 769, 983
FaqI GGGAC 2 cut(s) 717, 953
FatI CATG 4 cut(s) 93, 594, 765, 979
FauNDI CATATG 1 cut(s) 1303
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 170, 1416
FokI GGATG 4 cut(s) 827, 1272, 1307, 1450
FriOI GRGCYC 2 cut(s) 370, 1385
Fsp4HI GCNGC 2 cut(s) 170, 1416
FspBI CTAG 9 cut(s) 245, 284, 621, 783, 839, 1038, 1169, 1442, 1466
GlaI GCGC 1 cut(s) 32
GluI GCNGC 2 cut(s) 170, 1416
GsaI CCCAGC 2 cut(s) 657, 1294
HaeIII GGCC 4 cut(s) 98, 380, 1119, 1464
HapII CCGG 3 cut(s) 55, 574, 584
HhaI GCGC 1 cut(s) 33
Hin1II CATG 4 cut(s) 97, 598, 769, 983
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HincII GTYRAC 2 cut(s) 424, 878
HindII GTYRAC 2 cut(s) 424, 878
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 3 cut(s) 55, 574, 584
HphI GGTGA 7 cut(s) 263, 269, 286, 440, 746, 1024, 1412
Hpy166II GTNNAC 4 cut(s) 295, 424, 722, 878
Hpy188I TCNGA 8 cut(s) 12, 163, 361, 372, 555, 806, 1015, 1316
Hpy188III TCNNGA 3 cut(s) 43, 595, 1158
Hpy8I GTNNAC 4 cut(s) 295, 424, 722, 878
HpyAV CCTTC 5 cut(s) 529, 683, 692, 1155, 1164
HpyCH4III ACNGT 4 cut(s) 193, 428, 882, 1195
HpyCH4V TGCA 8 cut(s) 444, 467, 765, 893, 1062, 1088, 1301, 1397
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 1188
Hsp92II CATG 4 cut(s) 97, 598, 769, 983
HspAI GCGC 1 cut(s) 31
KspAI GTTAAC 1 cut(s) 424
Kzo9I GATC 4 cut(s) 455, 705, 774, 835
LmnI GCTCC 3 cut(s) 90, 518, 1448
Lsp1109I GCAGC 2 cut(s) 181, 1402
LweI GCATC 6 cut(s) 223, 314, 805, 1075, 1288, 1428
MaeI CTAG 9 cut(s) 245, 284, 621, 783, 839, 1038, 1169, 1442, 1466
MaeIII GTNAC 1 cut(s) 1171
MalI GATC 4 cut(s) 457, 707, 776, 837
MbiI CCGCTC 1 cut(s) 1364
MboI GATC 4 cut(s) 455, 705, 774, 835
MboII GAAGA 4 cut(s) 289, 409, 1300, 1336
MfeI CAATTG 2 cut(s) 407, 1113
MflI RGATCY 2 cut(s) 705, 774
MhlI GDGCHC 2 cut(s) 370, 1385
MlsI TGGCCA 2 cut(s) 98, 1119
MluNI TGGCCA 2 cut(s) 98, 1119
MlyI GAGTC 3 cut(s) 260, 544, 982
MmeI TCCRAC 1 cut(s) 643
Mox20I TGGCCA 2 cut(s) 98, 1119
Mph1103I ATGCAT 1 cut(s) 1303
MroXI GAANNNNTTC 1 cut(s) 994
MscI TGGCCA 2 cut(s) 98, 1119
MseI TTAA 5 cut(s) 423, 1008, 1215, 1376, 1470
MslI CAYNNNNRTG 2 cut(s) 599, 1232
Msp20I TGGCCA 2 cut(s) 98, 1119
MspI CCGG 3 cut(s) 55, 574, 584
MspR9I CCNGG 5 cut(s) 130, 182, 574, 575, 585
MunI CAATTG 2 cut(s) 407, 1113
MvaI CCWGG 2 cut(s) 130, 182
MwoI GCNNNNNNNGC 2 cut(s) 37, 1188
NciI CCSGG 3 cut(s) 574, 575, 585
NcoI CCATGG 1 cut(s) 93
NdeI CATATG 1 cut(s) 1303
NdeII GATC 4 cut(s) 455, 705, 774, 835
NheI GCTAGC 1 cut(s) 1441
NlaIII CATG 4 cut(s) 97, 598, 769, 983
NlaIV GGNNCC 3 cut(s) 186, 324, 733
NmuCI GTSAC 1 cut(s) 1171
NsiI ATGCAT 1 cut(s) 1303
NspI RCATGY 1 cut(s) 769
PaeR7I CTCGAG 1 cut(s) 41
PagI TCATGA 1 cut(s) 594
PasI CCCWGGG 1 cut(s) 129
PceI AGGCCT 1 cut(s) 1464
PcsI WCGNNNNNNNCGW 1 cut(s) 1172
PdmI GAANNNNTTC 1 cut(s) 994
PfeI GAWTC 6 cut(s) 287, 542, 680, 990, 1264, 1332
PflMI CCANNNNNTGG 2 cut(s) 94, 728
PkrI GCNGC 2 cut(s) 171, 1417
PleI GAGTC 3 cut(s) 260, 544, 981
PpsI GAGTC 3 cut(s) 260, 544, 981
PpuMI RGGWCCY 2 cut(s) 184, 323
PsiI TTATAA 1 cut(s) 1428
Psp124BI GAGCTC 1 cut(s) 370
Psp5II RGGWCCY 2 cut(s) 184, 323
Psp6I CCWGG 2 cut(s) 128, 180
PspFI CCCAGC 2 cut(s) 653, 1290
PspGI CCWGG 2 cut(s) 128, 180
PspN4I GGNNCC 3 cut(s) 186, 324, 733
PspPI GGNCC 3 cut(s) 184, 323, 731
PspPPI RGGWCCY 2 cut(s) 184, 323
PstI CTGCAG 1 cut(s) 1399
PsuI RGATCY 2 cut(s) 705, 774
RsaI GTAC 2 cut(s) 149, 619
RsaNI GTAC 2 cut(s) 148, 618
RseI CAYNNNNRTG 2 cut(s) 599, 1232
SacI GAGCTC 1 cut(s) 370
SaqAI TTAA 5 cut(s) 423, 1008, 1215, 1376, 1470
SatI GCNGC 2 cut(s) 170, 1416
Sau3AI GATC 4 cut(s) 455, 705, 774, 835
Sau96I GGNCC 3 cut(s) 184, 323, 731
ScaI AGTACT 1 cut(s) 619
SchI GAGTC 3 cut(s) 260, 544, 982
ScrFI CCNGG 5 cut(s) 130, 182, 574, 575, 585
SduI GDGCHC 2 cut(s) 370, 1385
SfaNI GCATC 6 cut(s) 223, 314, 805, 1075, 1288, 1428
SfcI CTRYAG 2 cut(s) 291, 1395
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 3 cut(s) 184, 323, 731
SlaI CTCGAG 1 cut(s) 41
SmaI CCCGGG 1 cut(s) 575
SmiMI CAYNNNNRTG 2 cut(s) 599, 1232
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SpeI ACTAGT 3 cut(s) 620, 782, 1037
SseBI AGGCCT 1 cut(s) 1464
SsiI CCGC 4 cut(s) 351, 977, 1257, 1364
SspMI CTAG 9 cut(s) 245, 284, 621, 783, 839, 1038, 1169, 1442, 1466
SstI GAGCTC 1 cut(s) 370
StuI AGGCCT 1 cut(s) 1464
StyD4I CCNGG 5 cut(s) 128, 180, 572, 573, 583
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 4 cut(s) 193, 428, 882, 1195
TaqI TCGA 2 cut(s) 42, 1335
TaqII GACCGA 1 cut(s) 863
TatI WGTACW 1 cut(s) 617
TfiI GAWTC 6 cut(s) 287, 542, 680, 990, 1264, 1332
Tru1I TTAA 5 cut(s) 423, 1008, 1215, 1376, 1470
Tru9I TTAA 5 cut(s) 423, 1008, 1215, 1376, 1470
TscAI CASTG 1 cut(s) 974
TseFI GTSAC 1 cut(s) 1171
TseI GCWGC 2 cut(s) 169, 1415
Tsp45I GTSAC 1 cut(s) 1171
TspDTI ATGAA 2 cut(s) 611, 1300
TspGWI ACGGA 1 cut(s) 1392
TspMI CCCGGG 1 cut(s) 573
TspRI CASTG 1 cut(s) 974
Van91I CCANNNNNTGG 2 cut(s) 94, 728
VpaK11BI GGWCC 3 cut(s) 184, 323, 731
XapI RAATTY 2 cut(s) 431, 1094
XceI RCATGY 1 cut(s) 769
XhoI CTCGAG 1 cut(s) 41
XmaI CCCGGG 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 994
XspI CTAG 9 cut(s) 245, 284, 621, 783, 839, 1038, 1169, 1442, 1466
ZrmI AGTACT 1 cut(s) 619
Zsp2I ATGCAT 1 cut(s) 1303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.