RchiOBHm_Chr6g0302931

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001838
Physical Location & Seq
Reverse (-)
62845171 .. 62845716
546 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27213

Sequence Viewer

Length: 435 bp
ATGCAGGAGATCAACTTGGGGAGACATATATCAAGCACATTCTACTCCGGCACAAGAAAGCTGTTGGGAAAACAGATGTTCTATTCCCTTGAGATTCATGATGGCATCCTCTATGCGGGCGGTTCATCAGTTGATGCAACAGCTGGGAAGATATTTTCACTTCCAAACAAGGCGGTATTAGGATCATTCTCAACTGGATTTGACATCCAACGCATTGCCACCAACAATGACTTGATCTTTACGGCAACAAAGTGTGGGATAATTGAGGTTTGGTTGAAAGAGAGGTTCACAAGAATTGCTTCCATCAAAACAGTTGGCGGTGGTCATGCCAAGATCACATCCTTGGCGGCAGATATGGACGGAGGATTGCTGTTTGCAGGTTCCTCTGATGGCAGAATCCAGGTGAACATCACGATATCAGTACTCATATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box WD40

Protein Analysis

144

Amino Acids

15.4

Weight (kDa)

9.17

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
AciI CCGC 5 cut(s) 116, 120, 173, 318, 347
AclWI GGATC 1 cut(s) 190
AfaI GTAC 1 cut(s) 423
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 2 cut(s) 61, 143
AluI AGCT 2 cut(s) 61, 143
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 415
BccI CCATC 3 cut(s) 95, 311, 383
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 401
BcoDI GTCTC 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 368
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
BmcAI AGTACT 1 cut(s) 423
Bme1390I CCNGG 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 2 cut(s) 114, 124
BpuEI CTTGAG 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 342
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 3 cut(s) 105, 204, 338
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 16
Bsp143I GATC 4 cut(s) 9, 182, 234, 333
BspACI CCGC 5 cut(s) 116, 120, 173, 318, 347
BspHI TCATGA 2 cut(s) 97, 431
BspLI GGNNCC 1 cut(s) 382
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 4 cut(s) 9, 182, 234, 333
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 118
BstF5I GGATG 3 cut(s) 105, 204, 338
BstKTI GATC 4 cut(s) 12, 185, 237, 336
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 4 cut(s) 9, 182, 234, 333
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BtsCI GGATG 3 cut(s) 105, 204, 338
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 118
CciI TCATGA 2 cut(s) 97, 431
Csp6I GTAC 1 cut(s) 422
CviAII CATG 3 cut(s) 98, 326, 432
CviJI RGCY 2 cut(s) 61, 143
CviKI_1 RGCY 2 cut(s) 61, 143
CviQI GTAC 1 cut(s) 422
DpnI GATC 4 cut(s) 11, 184, 236, 335
DpnII GATC 4 cut(s) 9, 182, 234, 333
Eco130I CCWWGG 1 cut(s) 342
Eco32I GATATC 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 399
EcoRV GATATC 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 3 cut(s) 101, 329, 435
FaiI YATR 8 cut(s) 27, 29, 99, 114, 327, 356, 428, 433
FalI AAGNNNNNCTT 2 cut(s) 283, 315
FatI CATG 3 cut(s) 97, 325, 431
FauI CCCGC 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 3 cut(s) 92, 191, 325
Fsp4HI GCNGC 1 cut(s) 348
GluI GCNGC 1 cut(s) 348
GsaI CCCAGC 1 cut(s) 147
HapII CCGG 1 cut(s) 48
Hin1II CATG 3 cut(s) 101, 329, 435
HinfI GANTC 2 cut(s) 94, 396
HpaII CCGG 1 cut(s) 48
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 2 cut(s) 288, 406
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 3 cut(s) 98, 412, 432
Hpy8I GTNNAC 2 cut(s) 288, 406
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 3 cut(s) 4, 137, 377
Hsp92II CATG 3 cut(s) 101, 329, 435
Kzo9I GATC 4 cut(s) 9, 182, 234, 333
LpnPI CCDG 6 cut(s) 61, 129, 180, 363, 386, 413
LweI GCATC 2 cut(s) 114, 124
MalI GATC 4 cut(s) 11, 184, 236, 335
MboI GATC 4 cut(s) 9, 182, 234, 333
MboII GAAGA 1 cut(s) 160
MluCI AATT 2 cut(s) 261, 294
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 5 cut(s) 119, 259, 276, 356, 394
MroXI GAANNNNTTC 1 cut(s) 298
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 401
NdeII GATC 4 cut(s) 9, 182, 234, 333
NlaIII CATG 3 cut(s) 101, 329, 435
NlaIV GGNNCC 1 cut(s) 382
PagI TCATGA 2 cut(s) 97, 431
PdmI GAANNNNTTC 1 cut(s) 298
PfeI GAWTC 2 cut(s) 94, 396
PkrI GCNGC 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 399
PspFI CCCAGC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 4 cut(s) 9, 182, 234, 333
ScaI AGTACT 1 cut(s) 423
ScrFI CCNGG 1 cut(s) 401
SetI ASST 6 cut(s) 63, 145, 270, 287, 382, 405
SfaNI GCATC 2 cut(s) 114, 124
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 261, 294
SsiI CCGC 5 cut(s) 116, 120, 173, 318, 347
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 313
TasI AATT 2 cut(s) 261, 294
TatI WGTACW 1 cut(s) 421
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 2 cut(s) 94, 396
TspDTI ATGAA 2 cut(s) 86, 114
TspGWI ACGGA 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 298
ZrmI AGTACT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.