RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_1g05520 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380 FvH4_2g38380 |
| malus_domestica | MD02G1056600.v1.1 MD15G1011400.v1.1 MD15G1191200.v1.1 |
| prunus_persica | Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.1G364600_v2.0.a1 Prupe.7G226000_v2.0.a1 Prupe.7G226000_v2.0.a1 |
| pyrus_communis | pycom02g04580 pycom02g04590 pycom15g17120 |
| rosa_chinensis | RchiOBHm_Chr2g0091211 RchiOBHm_Chr6g0302931 RchiOBHm_Chr6g0302941 |
| rosa_laevigata | RLG00000011123 RLG00000016192 |
| rosa_multiflora | Rmu_sc0002270.1_g000015 Rmu_sc0033272.1_g000001 Rmu_ssc0000460.1_g000018 |
| rosa_roxburghii | Rroxscaffold_2G00150380 Rroxscaffold_7G00165160 |
| rosa_rugosa | Rorug02G0014500 Rorug06G0318200 Rorug06G0318300 Rorug06G0318300 |
| rosa_samantha | Rh2AG060300 Rh2BG059000 Rh2CG060800 Rh2DG059600 Rh6AG431800 Rh6BG470800 Rh6CG444200 Rh6DG431000 |
| rosa_wichuraiana | Rw2G004960 Rw6G037430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 275 |
| AcsI | RAATTY | 2 cut(s) | 129, 335 |
| AcuI | CTGAAG | 2 cut(s) | 77, 192 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 163 |
| AgsI | TTSAA | 1 cut(s) | 135 |
| AjnI | CCWGG | 3 cut(s) | 156, 173, 231 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 56, 88 |
| AluBI | AGCT | 2 cut(s) | 188, 345 |
| AluI | AGCT | 2 cut(s) | 188, 345 |
| Alw26I | GTCTC | 2 cut(s) | 45, 111 |
| Aor13HI | TCCGGA | 1 cut(s) | 275 |
| ApoI | RAATTY | 2 cut(s) | 129, 335 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 130 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AsuHPI | GGTGA | 1 cut(s) | 76 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 231, 264 |
| BbsI | GAAGAC | 1 cut(s) | 219 |
| BciT130I | CCWGG | 3 cut(s) | 158, 175, 233 |
| BciVI | GTATCC | 1 cut(s) | 232 |
| BcoDI | GTCTC | 2 cut(s) | 45, 111 |
| BfaI | CTAG | 1 cut(s) | 33 |
| BfuI | GTATCC | 1 cut(s) | 232 |
| Bme1390I | CCNGG | 3 cut(s) | 158, 175, 233 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmrFI | CCNGG | 3 cut(s) | 158, 175, 233 |
| BpiI | GAAGAC | 1 cut(s) | 219 |
| BpmI | CTGGAG | 1 cut(s) | 254 |
| BsaJI | CCNNGG | 2 cut(s) | 231, 267 |
| BsaWI | WCCGGW | 1 cut(s) | 275 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 27, 57 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 163 |
| Bse1I | ACTGG | 1 cut(s) | 70 |
| BseAI | TCCGGA | 1 cut(s) | 275 |
| BseBI | CCWGG | 3 cut(s) | 158, 175, 233 |
| BseDI | CCNNGG | 2 cut(s) | 231, 267 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 163 |
| BseNI | ACTGG | 1 cut(s) | 70 |
| BsiSI | CCGG | 1 cut(s) | 276 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 163 |
| BsmAI | GTCTC | 2 cut(s) | 45, 111 |
| Bsp13I | TCCGGA | 1 cut(s) | 275 |
| BspEI | TCCGGA | 1 cut(s) | 275 |
| BsrI | ACTGG | 1 cut(s) | 70 |
| BssECI | CCNNGG | 2 cut(s) | 231, 267 |
| Bst2UI | CCWGG | 3 cut(s) | 158, 175, 233 |
| Bst4CI | ACNGT | 1 cut(s) | 39 |
| Bst6I | CTCTTC | 1 cut(s) | 211 |
| BstDEI | CTNAG | 1 cut(s) | 12 |
| BstDSI | CCRYGG | 1 cut(s) | 267 |
| BstMAI | GTCTC | 2 cut(s) | 45, 111 |
| BstNI | CCWGG | 3 cut(s) | 158, 175, 233 |
| BstSCI | CCNGG | 3 cut(s) | 156, 173, 231 |
| BstV2I | GAAGAC | 1 cut(s) | 219 |
| BsuI | GTATCC | 1 cut(s) | 232 |
| BtgI | CCRYGG | 1 cut(s) | 267 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CviJI | RGCY | 6 cut(s) | 55, 61, 188, 322, 332, 345 |
| CviKI_1 | RGCY | 6 cut(s) | 55, 61, 188, 322, 332, 345 |
| DdeI | CTNAG | 1 cut(s) | 12 |
| Eam1104I | CTCTTC | 1 cut(s) | 211 |
| EarI | CTCTTC | 1 cut(s) | 211 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 2 cut(s) | 77, 192 |
| EcoRII | CCWGG | 3 cut(s) | 156, 173, 231 |
| FaiI | YATR | 3 cut(s) | 30, 51, 216 |
| FspBI | CTAG | 1 cut(s) | 33 |
| GsuI | CTGGAG | 1 cut(s) | 254 |
| HapII | CCGG | 1 cut(s) | 276 |
| HindIII | AAGCTT | 1 cut(s) | 186 |
| HinfI | GANTC | 4 cut(s) | 167, 218, 224, 272 |
| HpaII | CCGG | 1 cut(s) | 276 |
| HphI | GGTGA | 1 cut(s) | 76 |
| Hpy166II | GTNNAC | 1 cut(s) | 202 |
| Hpy188I | TCNGA | 3 cut(s) | 211, 223, 341 |
| Hpy188III | TCNNGA | 1 cut(s) | 276 |
| Hpy8I | GTNNAC | 1 cut(s) | 202 |
| HpyAV | CCTTC | 1 cut(s) | 58 |
| HpyCH4III | ACNGT | 1 cut(s) | 39 |
| HpyF3I | CTNAG | 1 cut(s) | 12 |
| Kpn2I | TCCGGA | 1 cut(s) | 275 |
| LmnI | GCTCC | 1 cut(s) | 278 |
| MaeI | CTAG | 1 cut(s) | 33 |
| MaeIII | GTNAC | 1 cut(s) | 247 |
| MboII | GAAGA | 9 cut(s) | 105, 138, 162, 198, 219, 246, 249, 252, 255 |
| MluCI | AATT | 4 cut(s) | 129, 285, 310, 335 |
| MlyI | GAGTC | 2 cut(s) | 227, 233 |
| MmeI | TCCRAC | 1 cut(s) | 54 |
| MnlI | CCTC | 5 cut(s) | 132, 158, 229, 283, 312 |
| MroI | TCCGGA | 1 cut(s) | 275 |
| MroXI | GAANNNNTTC | 1 cut(s) | 130 |
| MspI | CCGG | 1 cut(s) | 276 |
| MspR9I | CCNGG | 3 cut(s) | 158, 175, 233 |
| MvaI | CCWGG | 3 cut(s) | 158, 175, 233 |
| PdmI | GAANNNNTTC | 1 cut(s) | 130 |
| PfeI | GAWTC | 2 cut(s) | 167, 272 |
| PfoI | TCCNGGA | 1 cut(s) | 173 |
| PleI | GAGTC | 2 cut(s) | 226, 232 |
| PpsI | GAGTC | 2 cut(s) | 226, 232 |
| Psp6I | CCWGG | 3 cut(s) | 156, 173, 231 |
| PspGI | CCWGG | 3 cut(s) | 156, 173, 231 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 2 cut(s) | 227, 233 |
| ScrFI | CCNGG | 3 cut(s) | 158, 175, 233 |
| SetI | ASST | 3 cut(s) | 115, 190, 347 |
| SinI | GGWCC | 1 cut(s) | 67 |
| Sse9I | AATT | 4 cut(s) | 129, 285, 310, 335 |
| SspMI | CTAG | 1 cut(s) | 33 |
| StyD4I | CCNGG | 3 cut(s) | 156, 173, 231 |
| TaaI | ACNGT | 1 cut(s) | 39 |
| TaqI | TCGA | 1 cut(s) | 124 |
| TasI | AATT | 4 cut(s) | 129, 285, 310, 335 |
| TfiI | GAWTC | 2 cut(s) | 167, 272 |
| TspGWI | ACGGA | 1 cut(s) | 256 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XapI | RAATTY | 2 cut(s) | 129, 335 |
| XmnI | GAANNNNTTC | 1 cut(s) | 130 |
| XspI | CTAG | 1 cut(s) | 33 |